Clone Sequence Records
BO12825.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO12825.3prime
ATGGTCTAGAAAGCTTGCGACCTCGTCCTCGTTAAGGAGCATGTTTGGTA
TACCATCGCTGATGGGAAACACACGACCTGTCTCCGGGCACTCCAGTTGA
CCCTCGAGCACGTCGATCTCGAAGAGCAGATGGTGAAGCTTCTGCAAAAG
CAGTTCATTCTCCACAATGTTTTCAGGCTGAACGGCAGGAATGTCTTCTG
TGAGTTCCGCCACCTGAGCAGCTCCATAGACCGCTGACCAGTCCAGCTTG
GGAAGGATTCTCTCCACAAAAGTTGGATTAAATTCGCTCTCCACCACTTC
CTTTTTGTTAATCGTCAGTTTCAGGGGAAATCCCACTTTGACGCCCTTGA
TGGCCACGGAGGTCAAGAAGTTGTATGTGCTGAGTTTCATGTCGACTGAT
AACT
BO12825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-PA | 375 | CG12975-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 627 | CG12975-RA | 119..490 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21216132..21216324 | 19..211 | 965 | 100 | Plus |
3L | 28110227 | 3L | 21216476..21216579 | 210..313 | 520 | 100 | Plus |
3L | 28110227 | 3L | 21216644..21216721 | 313..390 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:41:39 has no hits.
BO12825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:57 Download gff for
BO12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:36 Download gff for
BO12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:03 Download gff for
BO12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 11..390 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:24:58 Download gff for
BO12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 11..390 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:24:58 Download gff for
BO12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21216126..21216323 | 11..210 | 98 | <- | Plus |
3L | 21216477..21216578 | 211..312 | 100 | <- | Plus |
3L | 21216644..21216721 | 313..390 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:03 Download gff for
BO12825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21209577..21209678 | 211..312 | 100 | <- | Plus |
arm_3L | 21209744..21209821 | 313..390 | 100 | | Plus |
arm_3L | 21209226..21209423 | 11..210 | 98 | <- | Plus |
BO12825.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO12825.5prime
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCGCAAGCTTTCTA
GACC
BO12825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-PA | 375 | CG12975-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 627 | CG12975-RA | 119..490 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21216132..21216324 | 388..196 | 965 | 100 | Minus |
3L | 28110227 | 3L | 21216476..21216579 | 197..94 | 520 | 100 | Minus |
3L | 28110227 | 3L | 21216644..21216721 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:28:37 has no hits.
BO12825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:58 Download gff for
BO12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:37 Download gff for
BO12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:01 Download gff for
BO12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 17..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:32:11 Download gff for
BO12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..496 | 17..396 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:11 Download gff for
BO12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21216126..21216323 | 197..396 | 98 | <- | Minus |
3L | 21216477..21216578 | 95..196 | 100 | <- | Minus |
3L | 21216644..21216721 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:01 Download gff for
BO12825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21209226..21209423 | 197..396 | 98 | <- | Minus |
arm_3L | 21209577..21209678 | 95..196 | 100 | <- | Minus |
arm_3L | 21209744..21209821 | 17..94 | 100 | | Minus |
BO12825.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632589
> BO12825.complete
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCGCAAGCTTTCTA
GACCAT
BO12825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 375 | CG12975-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-RA | 627 | CG12975-RA | 119..490 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21216132..21216324 | 388..196 | 965 | 100 | Minus |
3L | 28110227 | 3L | 21216476..21216579 | 197..94 | 520 | 100 | Minus |
3L | 28110227 | 3L | 21216644..21216721 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:44:16 has no hits.
BO12825.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:01 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:15 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 104..481 | 17..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:32 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..490 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:01 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 104..481 | 17..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:19 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12975-RA | 119..490 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:19 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21216130..21216323 | 197..390 | 98 | <- | Minus |
3L | 21216477..21216578 | 95..196 | 100 | <- | Minus |
3L | 21216644..21216721 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:32 Download gff for
BO12825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21209230..21209423 | 197..390 | 98 | <- | Minus |
arm_3L | 21209577..21209678 | 95..196 | 100 | <- | Minus |
arm_3L | 21209744..21209821 | 17..94 | 100 | | Minus |
BO12825.pep Sequence
Translation from 16 to 406
> BO12825.pep
MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLD
WSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLE
CPETGRVFPISDGIPNMLLNEDEVASFLDH
BO12825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12975-PA | 124 | CG12975-PA | 1..124 | 1..124 | 631 | 100 | Plus |