Clone BO12825 Report

Search the DGRC for BO12825

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG12975-RA
Protein status:BO12825.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO12825.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO12825.3prime
ATGGTCTAGAAAGCTTGCGACCTCGTCCTCGTTAAGGAGCATGTTTGGTA
TACCATCGCTGATGGGAAACACACGACCTGTCTCCGGGCACTCCAGTTGA
CCCTCGAGCACGTCGATCTCGAAGAGCAGATGGTGAAGCTTCTGCAAAAG
CAGTTCATTCTCCACAATGTTTTCAGGCTGAACGGCAGGAATGTCTTCTG
TGAGTTCCGCCACCTGAGCAGCTCCATAGACCGCTGACCAGTCCAGCTTG
GGAAGGATTCTCTCCACAAAAGTTGGATTAAATTCGCTCTCCACCACTTC
CTTTTTGTTAATCGTCAGTTTCAGGGGAAATCCCACTTTGACGCCCTTGA
TGGCCACGGAGGTCAAGAAGTTGTATGTGCTGAGTTTCATGTCGACTGAT
AACT

BO12825.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-PA 375 CG12975-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 627 CG12975-RA 119..490 390..19 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21216132..21216324 19..211 965 100 Plus
3L 28110227 3L 21216476..21216579 210..313 520 100 Plus
3L 28110227 3L 21216644..21216721 313..390 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:41:39 has no hits.

BO12825.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:57 Download gff for BO12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:36 Download gff for BO12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:03 Download gff for BO12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 11..390 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:24:58 Download gff for BO12825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 11..390 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:24:58 Download gff for BO12825.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21216126..21216323 11..210 98 <- Plus
3L 21216477..21216578 211..312 100 <- Plus
3L 21216644..21216721 313..390 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:03 Download gff for BO12825.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21209577..21209678 211..312 100 <- Plus
arm_3L 21209744..21209821 313..390 100   Plus
arm_3L 21209226..21209423 11..210 98 <- Plus

BO12825.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO12825.5prime
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCGCAAGCTTTCTA
GACC

BO12825.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-PA 375 CG12975-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 627 CG12975-RA 119..490 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21216132..21216324 388..196 965 100 Minus
3L 28110227 3L 21216476..21216579 197..94 520 100 Minus
3L 28110227 3L 21216644..21216721 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:28:37 has no hits.

BO12825.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:58 Download gff for BO12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:37 Download gff for BO12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:01 Download gff for BO12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 17..396 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:32:11 Download gff for BO12825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..496 17..396 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:11 Download gff for BO12825.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21216126..21216323 197..396 98 <- Minus
3L 21216477..21216578 95..196 100 <- Minus
3L 21216644..21216721 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:01 Download gff for BO12825.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21209226..21209423 197..396 98 <- Minus
arm_3L 21209577..21209678 95..196 100 <- Minus
arm_3L 21209744..21209821 17..94 100   Minus

BO12825.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ632589

> BO12825.complete
GAAGTTATCAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCG
TGGCCATCAAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAAC
AAAAAGGAAGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAAT
CCTTCCCAAGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGG
AACTCACAGAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAAT
GAACTGCTTTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCT
CGAGGGTCAACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCG
ATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTCGCAAGCTTTCTA
GACCAT

BO12825.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 375 CG12975-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-RA 627 CG12975-RA 119..490 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21216132..21216324 388..196 965 100 Minus
3L 28110227 3L 21216476..21216579 197..94 520 100 Minus
3L 28110227 3L 21216644..21216721 94..17 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:44:16 has no hits.

BO12825.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:01 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:15 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 104..481 17..396 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:32 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..490 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:01 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 104..481 17..396 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:19 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12975-RA 119..490 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:19 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21216130..21216323 197..390 98 <- Minus
3L 21216477..21216578 95..196 100 <- Minus
3L 21216644..21216721 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:32 Download gff for BO12825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21209230..21209423 197..390 98 <- Minus
arm_3L 21209577..21209678 95..196 100 <- Minus
arm_3L 21209744..21209821 17..94 100   Minus

BO12825.pep Sequence

Translation from 16 to 406

> BO12825.pep
MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLD
WSAVYGAAQVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLE
CPETGRVFPISDGIPNMLLNEDEVASFLDH

BO12825.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12975-PA 124 CG12975-PA 1..124 1..124 631 100 Plus