Clone Sequence Records
BO12826.3prime Sequence
647 bp (646 high quality bases) assembled on 2006-05-08
> BO12826.3prime
ATGGTCTAGAAAGCTTGCATAGTTCCCGGAGCAGATGCCGTTGTGAGCAT
AATGGTGCTGTTTGTGCCGGCAGGCACACAAGTTAGGAGCGAAGCAGTAA
GCTCGTGGTCCGCAGTTGTGATCACAGATTGGCATGCATTGCTGTCCATG
AAGCAGGCTGTCCCTTAGCTCGTATCCCTGGGCACAGATGCACCGTCCGT
CGGAGGAGCAGTTGCCATGTGTGCAGCGCCCAAGGCAGGGGTCCAGCAGA
CGGGGAGCCCTGTGGCGGCACTTTTGGGAGAGGGGATCAAAGTAGTAGTG
CCTGTCCTCACGGCACACACAGAGATCTGGTGCGGCGCAGTAGCCACCTG
CCGCCACGCACCCGGGGAGGCACTCTGCGGCACACACCAAACCATCCGGA
TTACCCGCCATATACTGATCGGCACAGGGACAGGATCCGTCCTCGAAGCA
CACTCCATTCAGGCAGACGATGTTGCAGCGCCTTACGCACTGGCGGGTGT
TGACCACCAGCATTTCGTAGTCTGAGCAAAGCTGTGAAGGCTCGTTGATC
TCCCAGTAGCCGTAGTCGTAGTAATAGTGACCCTCTACTACTGCCCACAG
CAGCAACTGTAGGAAGACCATCCGGCGCGACATGTCGACTGATAACT
BO12826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-PA | 618 | CG15861-RA | 1..615 | 633..19 | 3050 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-RB | 1563 | CG15861-RB | 671..1289 | 637..19 | 3065 | 99.7 | Minus |
CG15861-RA | 1067 | CG15861-RA | 175..793 | 637..19 | 3065 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24944018..24944426 | 229..637 | 2015 | 99.5 | Plus |
2R | 25286936 | 2R | 24943823..24943934 | 119..230 | 560 | 100 | Plus |
2R | 25286936 | 2R | 24943666..24943765 | 19..118 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:25:51 has no hits.
BO12826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:59 Download gff for
BO12826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:39 Download gff for
BO12826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:42 Download gff for
BO12826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 169..799 | 12..643 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:57 Download gff for
BO12826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 169..799 | 12..643 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:57 Download gff for
BO12826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24943660..24943765 | 12..118 | 96 | <- | Plus |
2R | 24943823..24943933 | 119..229 | 100 | <- | Plus |
2R | 24944019..24944427 | 230..639 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:42 Download gff for
BO12826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20831183..20831288 | 12..118 | 96 | <- | Plus |
arm_2R | 20831346..20831456 | 119..229 | 100 | <- | Plus |
arm_2R | 20831542..20831950 | 230..639 | 99 | <- | Plus |
BO12826.5prime Sequence
647 bp (646 high quality bases) assembled on 2006-05-08
> BO12826.5prime
GAAGTTATCAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGC
TGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAG
ATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAA
CACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGT
GCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAAT
CCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGC
AGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGC
ACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGT
CTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGA
CGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTC
ATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCT
TACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTA
TGCTCACAACGGCATCTGCTCCGGGAACTATGCAAGCTTTCTAGACC
BO12826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-PA | 618 | CG15861-RA | 1..615 | 17..631 | 3050 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-RB | 1563 | CG15861-RB | 671..1289 | 13..631 | 3065 | 99.7 | Plus |
CG15861-RA | 1067 | CG15861-RA | 175..793 | 13..631 | 3065 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24944018..24944426 | 421..13 | 2015 | 99.5 | Minus |
2R | 25286936 | 2R | 24943823..24943934 | 531..420 | 560 | 100 | Minus |
2R | 25286936 | 2R | 24943666..24943765 | 631..532 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:54:10 has no hits.
BO12826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:00 Download gff for
BO12826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:41 Download gff for
BO12826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:40 Download gff for
BO12826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 169..799 | 7..638 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:55 Download gff for
BO12826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 169..799 | 7..638 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:55 Download gff for
BO12826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24944019..24944427 | 11..420 | 99 | <- | Minus |
2R | 24943660..24943765 | 532..638 | 96 | <- | Minus |
2R | 24943823..24943933 | 421..531 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:40 Download gff for
BO12826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20831183..20831288 | 532..638 | 96 | <- | Minus |
arm_2R | 20831346..20831456 | 421..531 | 100 | <- | Minus |
arm_2R | 20831542..20831950 | 11..420 | 99 | <- | Minus |
BO12826.complete Sequence
649 bp assembled on 2006-10-11
GenBank Submission: FJ632590
> BO12826.complete
GAAGTTATCAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGC
TGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAG
ATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAA
CACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGT
GCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAAT
CCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGC
AGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGC
ACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGT
CTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGA
CGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTC
ATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCT
TACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTA
TGCTCACAACGGCATCTGCTCCGGGAACTATGCAAGCTTTCTAGACCAT
BO12826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-RB | 618 | CG15861-PB | 1..615 | 17..631 | 3060 | 99.8 | Plus |
CG15861-RA | 618 | CG15861-PA | 1..615 | 17..631 | 3060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-RB | 1563 | CG15861-RB | 671..1289 | 13..631 | 3065 | 99.7 | Plus |
CG15861-RA | 1067 | CG15861-RA | 175..793 | 13..631 | 3065 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24944018..24944426 | 421..13 | 2015 | 99.5 | Minus |
2R | 25286936 | 2R | 24943823..24943934 | 531..420 | 560 | 100 | Minus |
2R | 25286936 | 2R | 24943666..24943765 | 631..532 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:50 has no hits.
BO12826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:02 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:33 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 166..796 | 7..638 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:41 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 179..793 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:02 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 166..796 | 7..638 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:37 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15861-RA | 179..793 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:37 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24943662..24943765 | 532..633 | 98 | <- | Minus |
2R | 24943823..24943933 | 421..531 | 100 | <- | Minus |
2R | 24944019..24944422 | 17..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:41 Download gff for
BO12826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20831185..20831288 | 532..633 | 98 | <- | Minus |
arm_2R | 20831346..20831456 | 421..531 | 100 | <- | Minus |
arm_2R | 20831542..20831945 | 17..420 | 99 | | Minus |
BO12826.pep Sequence
Translation from 16 to 649
> BO12826.pep
MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV
RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA
APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC
AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI
CSGNYASFLDH
BO12826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15861-PB | 205 | CG15861-PB | 1..205 | 1..205 | 1206 | 100 | Plus |
CG15861-PA | 205 | CG15861-PA | 1..205 | 1..205 | 1206 | 100 | Plus |
eater-PC | 1074 | CG6124-PC | 110..260 | 35..198 | 217 | 31.7 | Plus |
NimC2-PA | 648 | CG18146-PA | 219..356 | 36..188 | 207 | 33.5 | Plus |
NimC2-PC | 701 | CG18146-PC | 272..409 | 36..188 | 207 | 33.5 | Plus |
eater-PC | 1074 | CG6124-PC | 315..465 | 36..203 | 206 | 33.1 | Plus |
eater-PC | 1074 | CG6124-PC | 42..181 | 36..188 | 201 | 27.7 | Plus |
eater-PC | 1074 | CG6124-PC | 645..795 | 36..203 | 199 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 579..729 | 36..203 | 198 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 381..531 | 36..203 | 197 | 32.6 | Plus |
eater-PC | 1074 | CG6124-PC | 262..399 | 49..203 | 191 | 32.3 | Plus |
NimC2-PA | 648 | CG18146-PA | 18..172 | 43..207 | 189 | 30.6 | Plus |
NimC2-PA | 648 | CG18146-PA | 402..531 | 46..188 | 189 | 32.2 | Plus |
eater-PC | 1074 | CG6124-PC | 513..663 | 36..203 | 188 | 32 | Plus |
NimC2-PA | 648 | CG18146-PA | 113..254 | 35..188 | 188 | 27.3 | Plus |
eater-PC | 1074 | CG6124-PC | 767..909 | 25..188 | 184 | 29.9 | Plus |
eater-PC | 1074 | CG6124-PC | 843..989 | 36..188 | 184 | 34.4 | Plus |
NimC2-PA | 648 | CG18146-PA | 162..288 | 49..188 | 183 | 31.9 | Plus |
NimC2-PA | 648 | CG18146-PA | 335..461 | 49..188 | 175 | 30.6 | Plus |
eater-PC | 1074 | CG6124-PC | 346..480 | 36..188 | 170 | 29.2 | Plus |
NimC2-PA | 648 | CG18146-PA | 430..566 | 39..187 | 161 | 31.2 | Plus |