Clone BO12826 Report

Search the DGRC for BO12826

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG15861-RA
Protein status:BO12826.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO12826.3prime Sequence

647 bp (646 high quality bases) assembled on 2006-05-08

> BO12826.3prime
ATGGTCTAGAAAGCTTGCATAGTTCCCGGAGCAGATGCCGTTGTGAGCAT
AATGGTGCTGTTTGTGCCGGCAGGCACACAAGTTAGGAGCGAAGCAGTAA
GCTCGTGGTCCGCAGTTGTGATCACAGATTGGCATGCATTGCTGTCCATG
AAGCAGGCTGTCCCTTAGCTCGTATCCCTGGGCACAGATGCACCGTCCGT
CGGAGGAGCAGTTGCCATGTGTGCAGCGCCCAAGGCAGGGGTCCAGCAGA
CGGGGAGCCCTGTGGCGGCACTTTTGGGAGAGGGGATCAAAGTAGTAGTG
CCTGTCCTCACGGCACACACAGAGATCTGGTGCGGCGCAGTAGCCACCTG
CCGCCACGCACCCGGGGAGGCACTCTGCGGCACACACCAAACCATCCGGA
TTACCCGCCATATACTGATCGGCACAGGGACAGGATCCGTCCTCGAAGCA
CACTCCATTCAGGCAGACGATGTTGCAGCGCCTTACGCACTGGCGGGTGT
TGACCACCAGCATTTCGTAGTCTGAGCAAAGCTGTGAAGGCTCGTTGATC
TCCCAGTAGCCGTAGTCGTAGTAATAGTGACCCTCTACTACTGCCCACAG
CAGCAACTGTAGGAAGACCATCCGGCGCGACATGTCGACTGATAACT

BO12826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-PA 618 CG15861-RA 1..615 633..19 3050 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-RB 1563 CG15861-RB 671..1289 637..19 3065 99.7 Minus
CG15861-RA 1067 CG15861-RA 175..793 637..19 3065 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24944018..24944426 229..637 2015 99.5 Plus
2R 25286936 2R 24943823..24943934 119..230 560 100 Plus
2R 25286936 2R 24943666..24943765 19..118 500 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:25:51 has no hits.

BO12826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:59 Download gff for BO12826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:39 Download gff for BO12826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:42 Download gff for BO12826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 169..799 12..643 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:57 Download gff for BO12826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 169..799 12..643 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:57 Download gff for BO12826.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24943660..24943765 12..118 96 <- Plus
2R 24943823..24943933 119..229 100 <- Plus
2R 24944019..24944427 230..639 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:42 Download gff for BO12826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20831183..20831288 12..118 96 <- Plus
arm_2R 20831346..20831456 119..229 100 <- Plus
arm_2R 20831542..20831950 230..639 99 <- Plus

BO12826.5prime Sequence

647 bp (646 high quality bases) assembled on 2006-05-08

> BO12826.5prime
GAAGTTATCAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGC
TGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAG
ATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAA
CACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGT
GCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAAT
CCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGC
AGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGC
ACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGT
CTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGA
CGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTC
ATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCT
TACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTA
TGCTCACAACGGCATCTGCTCCGGGAACTATGCAAGCTTTCTAGACC

BO12826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-PA 618 CG15861-RA 1..615 17..631 3050 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-RB 1563 CG15861-RB 671..1289 13..631 3065 99.7 Plus
CG15861-RA 1067 CG15861-RA 175..793 13..631 3065 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24944018..24944426 421..13 2015 99.5 Minus
2R 25286936 2R 24943823..24943934 531..420 560 100 Minus
2R 25286936 2R 24943666..24943765 631..532 500 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:54:10 has no hits.

BO12826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:00 Download gff for BO12826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-PA 1..618 17..634 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:41 Download gff for BO12826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-PA 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:40 Download gff for BO12826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 169..799 7..638 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:55 Download gff for BO12826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 169..799 7..638 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:55 Download gff for BO12826.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24944019..24944427 11..420 99 <- Minus
2R 24943660..24943765 532..638 96 <- Minus
2R 24943823..24943933 421..531 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:40 Download gff for BO12826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20831183..20831288 532..638 96 <- Minus
arm_2R 20831346..20831456 421..531 100 <- Minus
arm_2R 20831542..20831950 11..420 99 <- Minus

BO12826.complete Sequence

649 bp assembled on 2006-10-11

GenBank Submission: FJ632590

> BO12826.complete
GAAGTTATCAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGC
TGTGGGCAGTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAG
ATCAACGAGCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAA
CACCCGCCAGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGT
GCTTCGAGGACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAAT
CCGGATGGTTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGC
AGGTGGCTACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGC
ACTACTACTTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGT
CTGCTGGACCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGA
CGGACGGTGCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTC
ATGGACAGCAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCT
TACTGCTTCGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTA
TGCTCACAACGGCATCTGCTCCGGGAACTATGCAAGCTTTCTAGACCAT

BO12826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-RB 618 CG15861-PB 1..615 17..631 3060 99.8 Plus
CG15861-RA 618 CG15861-PA 1..615 17..631 3060 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-RB 1563 CG15861-RB 671..1289 13..631 3065 99.7 Plus
CG15861-RA 1067 CG15861-RA 175..793 13..631 3065 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24944018..24944426 421..13 2015 99.5 Minus
2R 25286936 2R 24943823..24943934 531..420 560 100 Minus
2R 25286936 2R 24943666..24943765 631..532 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:36:50 has no hits.

BO12826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:02 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:33 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 166..796 7..638 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:41 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 179..793 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:02 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 166..796 7..638 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:37 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15861-RA 179..793 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:37 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24943662..24943765 532..633 98 <- Minus
2R 24943823..24943933 421..531 100 <- Minus
2R 24944019..24944422 17..420 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:41 Download gff for BO12826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20831185..20831288 532..633 98 <- Minus
arm_2R 20831346..20831456 421..531 100 <- Minus
arm_2R 20831542..20831945 17..420 99   Minus

BO12826.pep Sequence

Translation from 16 to 649

> BO12826.pep
MSRRMVFLQLLLWAVVEGHYYYDYGYWEINEPSQLCSDYEMLVVNTRQCV
RRCNIVCLNGVCFEDGSCPCADQYMAGNPDGLVCAAECLPGCVAAGGYCA
APDLCVCREDRHYYFDPLSQKCRHRAPRLLDPCLGRCTHGNCSSDGRCIC
AQGYELRDSLLHGQQCMPICDHNCGPRAYCFAPNLCACRHKQHHYAHNGI
CSGNYASFLDH

BO12826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15861-PB 205 CG15861-PB 1..205 1..205 1206 100 Plus
CG15861-PA 205 CG15861-PA 1..205 1..205 1206 100 Plus
eater-PC 1074 CG6124-PC 110..260 35..198 217 31.7 Plus
NimC2-PA 648 CG18146-PA 219..356 36..188 207 33.5 Plus
NimC2-PC 701 CG18146-PC 272..409 36..188 207 33.5 Plus
eater-PC 1074 CG6124-PC 315..465 36..203 206 33.1 Plus
eater-PC 1074 CG6124-PC 42..181 36..188 201 27.7 Plus
eater-PC 1074 CG6124-PC 645..795 36..203 199 32.6 Plus
eater-PC 1074 CG6124-PC 579..729 36..203 198 32.6 Plus
eater-PC 1074 CG6124-PC 381..531 36..203 197 32.6 Plus
eater-PC 1074 CG6124-PC 262..399 49..203 191 32.3 Plus
NimC2-PA 648 CG18146-PA 18..172 43..207 189 30.6 Plus
NimC2-PA 648 CG18146-PA 402..531 46..188 189 32.2 Plus
eater-PC 1074 CG6124-PC 513..663 36..203 188 32 Plus
NimC2-PA 648 CG18146-PA 113..254 35..188 188 27.3 Plus
eater-PC 1074 CG6124-PC 767..909 25..188 184 29.9 Plus
eater-PC 1074 CG6124-PC 843..989 36..188 184 34.4 Plus
NimC2-PA 648 CG18146-PA 162..288 49..188 183 31.9 Plus
NimC2-PA 648 CG18146-PA 335..461 49..188 175 30.6 Plus
eater-PC 1074 CG6124-PC 346..480 36..188 170 29.2 Plus
NimC2-PA 648 CG18146-PA 430..566 39..187 161 31.2 Plus