Clone Sequence Records
BO12827.3prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO12827.3prime
ATGGTCTAGAAAGCTTGCGAACTCCATCCGTCGCTGCTTGTTCTTAAAAC
TAATGGCCAGAAACACGGCCAAGGCGAAGCAGATTAACTCGAAGGCCACT
AGCACCCAGGACACTATGATGAAGCGCAGCTTGTCGCTTTCGTAGAAGCT
CTGCACCTTTTCGATGCACCCGTCCAGATAGAGGTGGTCGGGGGTCTGCT
GCAGATCCGCGTAGCAGCTGGGCGGGATCAGCAGGCTGAGGTGGATATAG
TCCTGGGCGCTGCTCTGGCCGCAGCACTCGTGCTTCTGCTGCAAGGAATC
CATGTTGTTCGCCTGCCAGGCCACCTCCACCATGTCCCGGCCGCTCTTCA
CGTCGAACTCGTGGAGGAACAGGCAGGTGCTCACGATCTGCAGGATGGCC
AAGATCAGCAGGAAGACAGCACTCGTTGCAGTCAGCACCACCGATTCCCG
GATGGCCGCGAAGATGCCCAGCAGAGCAAAGACCAGGATGAGCGAGCACG
CGATGTAAGCGGCTATTACGAATTCCTCCGTCTCCGTGTCCGCATTGTAA
GCTATCCAGCCGATGGCCCCAGCAGCAAGAAACCCTAAAACGGCATTCAG
AACGATGGAGGCGATCTTCACGCTGGTCGTGGCGCAACCCATGTCGACTG
ATAACT
BO12827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2374-PA | 627 | lbm-RA | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 923 | CG2374-RB | 80..703 | 642..19 | 3120 | 100 | Minus |
lbm-RA | 1029 | CG2374-RA | 186..809 | 642..19 | 3120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7051277..7051613 | 424..88 | 1685 | 100 | Minus |
2R | 25286936 | 2R | 7051062..7051221 | 583..424 | 800 | 100 | Minus |
2R | 25286936 | 2R | 7051674..7051744 | 89..19 | 355 | 100 | Minus |
2R | 25286936 | 2R | 7050044..7050103 | 642..583 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:43:48 has no hits.
BO12827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:01 Download gff for
BO12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-PA | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:42 Download gff for
BO12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2374-PA | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:34 Download gff for
BO12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..814 | 11..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:56 Download gff for
BO12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..814 | 11..650 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:56 Download gff for
BO12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7050037..7050103 | 583..650 | 94 | -> | Minus |
2R | 7051063..7051221 | 424..582 | 100 | -> | Minus |
2R | 7051278..7051613 | 88..423 | 100 | -> | Minus |
2R | 7051676..7051749 | 11..87 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:34 Download gff for
BO12827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2937542..2937608 | 583..650 | 94 | -> | Minus |
arm_2R | 2938568..2938726 | 424..582 | 100 | -> | Minus |
arm_2R | 2938783..2939118 | 88..423 | 100 | -> | Minus |
arm_2R | 2939181..2939254 | 11..87 | 94 | | Minus |
BO12827.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO12827.5prime
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCGCAAGCTTTC
TAGACC
BO12827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2374-PA | 627 | lbm-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 923 | CG2374-RB | 80..703 | 17..640 | 3120 | 100 | Plus |
lbm-RA | 1029 | CG2374-RA | 186..809 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7051277..7051613 | 235..571 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 7051062..7051221 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7051674..7051744 | 570..640 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7050044..7050103 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:09:34 has no hits.
BO12827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:02 Download gff for
BO12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-PA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:43 Download gff for
BO12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2374-PA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:29 Download gff for
BO12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..814 | 9..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:48 Download gff for
BO12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 179..814 | 9..648 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:48 Download gff for
BO12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7050037..7050103 | 9..76 | 94 | -> | Plus |
2R | 7051063..7051221 | 77..235 | 100 | -> | Plus |
2R | 7051278..7051613 | 236..571 | 100 | -> | Plus |
2R | 7051676..7051749 | 572..648 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:29 Download gff for
BO12827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2937542..2937608 | 9..76 | 94 | -> | Plus |
arm_2R | 2938568..2938726 | 77..235 | 100 | -> | Plus |
arm_2R | 2938783..2939118 | 236..571 | 100 | -> | Plus |
arm_2R | 2939181..2939254 | 572..648 | 94 | | Plus |
BO12827.complete Sequence
658 bp assembled on 2006-10-11
GenBank Submission: FJ632591
> BO12827.complete
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCGCAAGCTTTC
TAGACCAT
BO12827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 627 | CG2374-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
lbm-RA | 627 | CG2374-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-RB | 923 | CG2374-RB | 80..703 | 17..640 | 3120 | 100 | Plus |
lbm-RA | 1029 | CG2374-RA | 186..809 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7051277..7051613 | 235..571 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 7051062..7051221 | 76..235 | 800 | 100 | Plus |
2R | 25286936 | 2R | 7051674..7051744 | 570..640 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7050044..7050103 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:31 has no hits.
BO12827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:03 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:35 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 174..809 | 9..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:14 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 186..809 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:03 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 174..809 | 9..648 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:08 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbm-RA | 186..809 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:08 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7051278..7051613 | 236..571 | 100 | -> | Plus |
2R | 7051676..7051744 | 572..642 | 97 | | Plus |
2R | 7050044..7050103 | 17..76 | 100 | -> | Plus |
2R | 7051063..7051221 | 77..235 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:14 Download gff for
BO12827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2938783..2939118 | 236..571 | 100 | -> | Plus |
arm_2R | 2939181..2939249 | 572..642 | 97 | | Plus |
arm_2R | 2937549..2937608 | 17..76 | 100 | -> | Plus |
arm_2R | 2938568..2938726 | 77..235 | 100 | -> | Plus |
BO12827.pep Sequence
Translation from 16 to 658
> BO12827.pep
MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACS
LILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKS
GRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQT
PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFK
NKQRRMEFASFLDH
BO12827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbm-PB | 208 | CG2374-PB | 1..208 | 1..208 | 1053 | 100 | Plus |
lbm-PA | 208 | CG2374-PA | 1..208 | 1..208 | 1053 | 100 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..208 | 257 | 32 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..208 | 243 | 31.7 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..208 | 243 | 31.7 | Plus |