Clone BO12827 Report

Search the DGRC for BO12827

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptlbm-RA
Protein status:BO12827.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO12827.3prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-08

> BO12827.3prime
ATGGTCTAGAAAGCTTGCGAACTCCATCCGTCGCTGCTTGTTCTTAAAAC
TAATGGCCAGAAACACGGCCAAGGCGAAGCAGATTAACTCGAAGGCCACT
AGCACCCAGGACACTATGATGAAGCGCAGCTTGTCGCTTTCGTAGAAGCT
CTGCACCTTTTCGATGCACCCGTCCAGATAGAGGTGGTCGGGGGTCTGCT
GCAGATCCGCGTAGCAGCTGGGCGGGATCAGCAGGCTGAGGTGGATATAG
TCCTGGGCGCTGCTCTGGCCGCAGCACTCGTGCTTCTGCTGCAAGGAATC
CATGTTGTTCGCCTGCCAGGCCACCTCCACCATGTCCCGGCCGCTCTTCA
CGTCGAACTCGTGGAGGAACAGGCAGGTGCTCACGATCTGCAGGATGGCC
AAGATCAGCAGGAAGACAGCACTCGTTGCAGTCAGCACCACCGATTCCCG
GATGGCCGCGAAGATGCCCAGCAGAGCAAAGACCAGGATGAGCGAGCACG
CGATGTAAGCGGCTATTACGAATTCCTCCGTCTCCGTGTCCGCATTGTAA
GCTATCCAGCCGATGGCCCCAGCAGCAAGAAACCCTAAAACGGCATTCAG
AACGATGGAGGCGATCTTCACGCTGGTCGTGGCGCAACCCATGTCGACTG
ATAACT

BO12827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2374-PA 627 lbm-RA 1..624 642..19 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 923 CG2374-RB 80..703 642..19 3120 100 Minus
lbm-RA 1029 CG2374-RA 186..809 642..19 3120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7051277..7051613 424..88 1685 100 Minus
2R 25286936 2R 7051062..7051221 583..424 800 100 Minus
2R 25286936 2R 7051674..7051744 89..19 355 100 Minus
2R 25286936 2R 7050044..7050103 642..583 300 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:43:48 has no hits.

BO12827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:01 Download gff for BO12827.3prime
Subject Subject Range Query Range Percent Splice Strand
lbm-PA 1..627 18..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:42 Download gff for BO12827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2374-PA 1..627 18..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:34 Download gff for BO12827.3prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..814 11..650 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:56 Download gff for BO12827.3prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..814 11..650 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:56 Download gff for BO12827.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7050037..7050103 583..650 94 -> Minus
2R 7051063..7051221 424..582 100 -> Minus
2R 7051278..7051613 88..423 100 -> Minus
2R 7051676..7051749 11..87 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:34 Download gff for BO12827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2937542..2937608 583..650 94 -> Minus
arm_2R 2938568..2938726 424..582 100 -> Minus
arm_2R 2938783..2939118 88..423 100 -> Minus
arm_2R 2939181..2939254 11..87 94   Minus

BO12827.5prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-08

> BO12827.5prime
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCGCAAGCTTTC
TAGACC

BO12827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2374-PA 627 lbm-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 923 CG2374-RB 80..703 17..640 3120 100 Plus
lbm-RA 1029 CG2374-RA 186..809 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7051277..7051613 235..571 1685 100 Plus
2R 25286936 2R 7051062..7051221 76..235 800 100 Plus
2R 25286936 2R 7051674..7051744 570..640 355 100 Plus
2R 25286936 2R 7050044..7050103 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:09:34 has no hits.

BO12827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:02 Download gff for BO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
lbm-PA 1..627 17..641 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:43 Download gff for BO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2374-PA 1..627 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:29 Download gff for BO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..814 9..648 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:48 Download gff for BO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 179..814 9..648 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:48 Download gff for BO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7050037..7050103 9..76 94 -> Plus
2R 7051063..7051221 77..235 100 -> Plus
2R 7051278..7051613 236..571 100 -> Plus
2R 7051676..7051749 572..648 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:29 Download gff for BO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2937542..2937608 9..76 94 -> Plus
arm_2R 2938568..2938726 77..235 100 -> Plus
arm_2R 2938783..2939118 236..571 100 -> Plus
arm_2R 2939181..2939254 572..648 94   Plus

BO12827.complete Sequence

658 bp assembled on 2006-10-11

GenBank Submission: FJ632591

> BO12827.complete
GAAGTTATCAGTCGACATGGGTTGCGCCACGACCAGCGTGAAGATCGCCT
CCATCGTTCTGAATGCCGTTTTAGGGTTTCTTGCTGCTGGGGCCATCGGC
TGGATAGCTTACAATGCGGACACGGAGACGGAGGAATTCGTAATAGCCGC
TTACATCGCGTGCTCGCTCATCCTGGTCTTTGCTCTGCTGGGCATCTTCG
CGGCCATCCGGGAATCGGTGGTGCTGACTGCAACGAGTGCTGTCTTCCTG
CTGATCTTGGCCATCCTGCAGATCGTGAGCACCTGCCTGTTCCTCCACGA
GTTCGACGTGAAGAGCGGCCGGGACATGGTGGAGGTGGCCTGGCAGGCGA
ACAACATGGATTCCTTGCAGCAGAAGCACGAGTGCTGCGGCCAGAGCAGC
GCCCAGGACTATATCCACCTCAGCCTGCTGATCCCGCCCAGCTGCTACGC
GGATCTGCAGCAGACCCCCGACCACCTCTATCTGGACGGGTGCATCGAAA
AGGTGCAGAGCTTCTACGAAAGCGACAAGCTGCGCTTCATCATAGTGTCC
TGGGTGCTAGTGGCCTTCGAGTTAATCTGCTTCGCCTTGGCCGTGTTTCT
GGCCATTAGTTTTAAGAACAAGCAGCGACGGATGGAGTTCGCAAGCTTTC
TAGACCAT

BO12827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 627 CG2374-PB 1..624 17..640 3120 100 Plus
lbm-RA 627 CG2374-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-RB 923 CG2374-RB 80..703 17..640 3120 100 Plus
lbm-RA 1029 CG2374-RA 186..809 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7051277..7051613 235..571 1685 100 Plus
2R 25286936 2R 7051062..7051221 76..235 800 100 Plus
2R 25286936 2R 7051674..7051744 570..640 355 100 Plus
2R 25286936 2R 7050044..7050103 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:13:31 has no hits.

BO12827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:03 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 1..627 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:35 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 174..809 9..648 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:14 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 186..809 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:03 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 174..809 9..648 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:08 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
lbm-RA 186..809 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:08 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7051278..7051613 236..571 100 -> Plus
2R 7051676..7051744 572..642 97   Plus
2R 7050044..7050103 17..76 100 -> Plus
2R 7051063..7051221 77..235 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:14 Download gff for BO12827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2938783..2939118 236..571 100 -> Plus
arm_2R 2939181..2939249 572..642 97   Plus
arm_2R 2937549..2937608 17..76 100 -> Plus
arm_2R 2938568..2938726 77..235 100 -> Plus

BO12827.pep Sequence

Translation from 16 to 658

> BO12827.pep
MGCATTSVKIASIVLNAVLGFLAAGAIGWIAYNADTETEEFVIAAYIACS
LILVFALLGIFAAIRESVVLTATSAVFLLILAILQIVSTCLFLHEFDVKS
GRDMVEVAWQANNMDSLQQKHECCGQSSAQDYIHLSLLIPPSCYADLQQT
PDHLYLDGCIEKVQSFYESDKLRFIIVSWVLVAFELICFALAVFLAISFK
NKQRRMEFASFLDH

BO12827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
lbm-PB 208 CG2374-PB 1..208 1..208 1053 100 Plus
lbm-PA 208 CG2374-PA 1..208 1..208 1053 100 Plus
Tsp42El-PA 217 CG12840-PA 1..217 1..208 257 32 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..208 243 31.7 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..208 243 31.7 Plus