Clone Sequence Records
BO12828.3prime Sequence
698 bp (613 high quality bases) assembled on 2006-05-08
> BO12828.3prime
ATGGTCTAGAAAGCTTGCGGCCACCGAACTGCACAGACCGCAGTTGCTCA
CCGGGCACATCTTCATCTCCACATCCTCGCCCACCCGCACCACTGCGGCC
ATTCCGTTCTCCGAGTGCGGCGATATGTGACAGTGGAACATCCAGTAGCC
GGGACTGTTCGAGTAGAACCGCAGGATCGTGTACCCGAAGGCGGGCACCT
GGACGGAGTCCTTCAGCGGAGCACCTTTGGCGCGTCGCGGCAGCGGCGTC
TTCTTGTCGATCTGTTCGATCTGGCCAATCTTCTGCTCCCCCAGCACTCC
CATCCCGACGACACGGAATGTGTAGCCGTGCAGGTGGATGGGATGCGGCG
TCTGCGACAGGCTGGAGATGACGAACTCCACCTGCTGGTTGGCTGGCACC
TGGATGACGTTGGAGCACTGACAGTGCCGCTGGCGGCAATTGAAACCAAG
ATCCGCCTGTTGGGAGCGATTGCAGAAGAACTGGCCAACGCCCAGGTTGC
GCGTCTGCAGCAGCGACATCTTGGGCATGCTGAAGCTGATGTCGTCCATC
TGGAAGCGGAAGCCCTCGCCCTGCCGCACCTCGAACGCGTTCATGCTGGT
GTAGAAGGTCACCGATGGCGCCCCTTCCGGTTCCGGTCGCTGGGCATTGA
GATTGGCCAACGATATGCTATTCCCAGCACGCGCACCGCTCGCATCGT
BO12828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-PA | 1938 | CG32557-RA | 1256..1935 | 698..19 | 3375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-RA | 2131 | CG32557-RA | 1378..2057 | 698..19 | 3385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17853032..17853711 | 19..698 | 3385 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:30:36 has no hits.
BO12828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:03 Download gff for
BO12828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-PA | 1256..1938 | 18..698 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:45 Download gff for
BO12828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-PA | 1256..1938 | 18..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:31 Download gff for
BO12828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 1378..2057 | 19..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:45 Download gff for
BO12828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 1378..2057 | 19..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:45 Download gff for
BO12828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17853032..17853711 | 19..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:31 Download gff for
BO12828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17747065..17747744 | 19..698 | 99 | | Plus |
BO12828.5prime Sequence
825 bp (776 high quality bases) assembled on 2006-05-08
> BO12828.5prime
GAAGTTATCAGTCGACATGAAATTCAATTTGGTGCAGACACTGGTCTTCA
CTTTGTGCCTCATCAGCGTGCAAATATATGGCATTCAAGATGCCAGTGGC
AAGCGGATCGTTAGCAAGTACGAGCGCATCATGCAGATGTATCCGCAGCT
CTCCTCCGGCGCAGGCGAATCCTCGCAGTGGCGGGCGGCCGAGAAGGACA
ACCAGCGGCATCCTTGCAGACGCGACTGCGCCGACAAGCAGCCGATGACC
TGCTACTACTACATGGTGGTCCACTACGACGACACGATGGCGGAGACCTG
CAAGCGCTACCTCCAGTCCAAATTCCGCTTCAAGCTGAGCGGCAAGGAGT
ACATCGATGGGATTGCGCTGGCAACGCAGCTGGCGGCGAACGACGACTGC
AAGTACGCCGATGGACTGGAGAGCGAGGTGATGGTGGTCAATGGCCAGCT
GCCGGGGATGAACATCGAGGTGTGCTACGGCGACACCGTGGTGGCGGACG
TGATCAACAGCATGCACGAGACGACGACGATCCACTGGCACGGGATGCAC
CAGCGACTAACGCCCTTCATGGACGGAGTGCCCCACGTCACCCAGTATCC
AATCGAGGCGGGTCAGGCGTTCCGCTACCGCTTCGAGGTGGATCACGGCG
GCACCAACTGGTGGCACAGCCACACGGAACATCAGCGGGCCTTCGGACTC
GCTGGGCCACTGGTGGTGCGAATGCCGCCCAAGCTCAATCCCCACGCGCA
TCTCTACGACTTCGACATGTCGGAGCACGTGATCATGATCCAGGACTGGG
TGCACAACTTCGTGGACAGCGTGGC
BO12828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-PA | 1938 | CG32557-RA | 1..809 | 17..825 | 4020 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-RA | 2131 | CG32557-RA | 122..931 | 16..825 | 4035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17854229..17854741 | 825..313 | 2550 | 99.8 | Minus |
| X | 23542271 | X | 17855226..17855454 | 316..88 | 1145 | 100 | Minus |
| X | 23542271 | X | 17855931..17856008 | 93..16 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:47 has no hits.
BO12828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:04 Download gff for
BO12828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:47 Download gff for
BO12828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:27 Download gff for
BO12828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 115..931 | 7..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:21 Download gff for
BO12828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 115..931 | 7..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:21 Download gff for
BO12828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17854229..17854737 | 317..825 | 99 | <- | Minus |
| X | 17855226..17855452 | 90..316 | 100 | <- | Minus |
| X | 17855935..17856015 | 7..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:27 Download gff for
BO12828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17748262..17748770 | 317..825 | 99 | <- | Minus |
| arm_X | 17749259..17749485 | 90..316 | 100 | <- | Minus |
| arm_X | 17749968..17750048 | 7..89 | 95 | | Minus |
BO12828.complete Sequence
1969 bp assembled on 2008-01-17
GenBank Submission: FJ632592
> BO12828.complete
GAAGTTATCAGTCGACATGAAATTCAATTTGGTGCAGACACTGGTCTTCA
CTTTGTGCCTCATCAGCGTGCAAATATATGGCATTCAAGATGCCAGTGGC
AAGCGGATCGTTAGCAAGTACGAGCGCATCATGCAGATGTATCCGCAGCT
CTCCTCCGGCGCAGGCGAATCCTCGCAGTGGCGGGCGGCCGAGAAGGACA
ACCAGCGGCATCCTTGCAGACGCGACTGCGCCGACAAGCAGCCGATGACC
TGCTACTACTACATGGTGGTCCACTACGACGACACGATGGCGGAGACCTG
CAAGCGCTACCTCCAGTCCAAATTCCGCTTCAAGCTGAGCGGCAAGGAGT
ACATCGATGGGATTGCGCTGGCAACGCAGCTGGCGGCGAACGACGACTGC
AAGTACGCCGATGGACTGGAGAGCGAGGTGATGGTGGTCAATGGCCAGCT
GCCGGGGATGAACATCGAGGTGTGCTACGGCGACACCGTGGTGGCGGACG
TGATCAACAGCATGCACGAGACGACGACGATCCACTGGCACGGGATGCAC
CAGCGACTAACGCCCTTCATGGACGGAGTGCCCCACGTCACCCAGTATCC
AATCGAGGCGGGTCAGGCGTTCCGCTACCGCTTCGAGGTGGATCACGGCG
GCACCAACTGGTGGCACAGCCACACGGAACATCAGCGGGCCTTCGGACTC
GCTGGGCCACTGGTGGTGCGAATGCCGCCCAAGCTCAATCCCCACGCGCA
TCTCTACGACTTCGACATGTCGGAGCACGTGATCATGATCCAGGACTGGG
TGCACAACTTCGTGGAGAGCGTGGCCGAGAACATTCTGATCAACGGGCGG
GGCAGGAATCTGAAGAAGGGCGTCAAGGCCGCCAAGCCCACGCTCTATGC
CCACTTTCCGGTGGTCAGGGGCGGACGCTATCGCTTCCGGGTGATCTTCA
ACGGCGTTTCGAACTGTCCGATCAGCTTCAGCATCGATAAGCACGACCTG
GTGGTGATCGCCAGCGATGGCAACGACATCGAGCCGGTGGAGGTGCAGCG
GATCATGTTCCACGGCGCGGAGCGCTTCGACTTCGTGCTGCACGCCAACC
AGGAGGTGAGCAACTACTGGATCCGGGTGAAGGGCTACAGCTTCTGTGCG
AAGAACCAGCTGCATCAGGAGGCGGTGTTGCACTACAGGGACGCGGATAC
CCGGGCGCTGGACACGCATACCCTGAGCTATGCCTACGATGCGCCGGGCA
AGACGCTCAATGAACTGGGCGACGATGCGAGCGGTGCGCGTGCTGGGAAT
AGCATATCGTTGGCCAATCTCAATGCCCAGCGACCGGAACCGGAAGTGGC
GCCATCGGTGACCTTCTACACCAGCATGAACGCGTTCGAGGTGCGGCAGG
GCGAGGGCTTCCGCTTCCAGATGGACGACATCAGCTTCAGCATGCCCAAG
ATGTCGCTGCTGCAGACGCGCAACCTGGGCGTTGGCCAGTTCTTCTGCAA
TCGCTCCCAACAGGCGGATCTTGGTTTCAATTGCCGCCAGCGGCACTGTC
AGTGCTCCAACGTCATCCAGGTGCCAGCCAACCAGCAGGTGGAGTTCGTC
ATCTCCAGCCTGTCGCAGACGCCGCATCCCATCCACCTGCACGGCTACAC
ATTCCGTGTCGTCGGGATGGGAGTGCTGGGGGAGCAGAAGATTGGCCAGA
TCGAACAGATCGACAAGAAGACGCCGCTGCCGCGACGCGCCAAAGGTGCT
CCGCTGAAGGACTCCGTCCAGGTGCCCGCCTTCGGGTACACGATCCTGCG
GTTCTACTCGAACAGTCCCGGCTACTGGATGTTCCACTGTCACATATCGC
CGCACTCGGAGAACGGAATGGCCGCAGTGGTGCGGGTGGGCGAGGATGTG
GAGATGAAGATGTGCCCGGTGAGCAACTGCGGTCTGTGCAGTTCGGTGGC
CGCAAGCTTTCTAGACCAT
BO12828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-RA | 1938 | CG32557-PA | 1..1935 | 17..1951 | 9675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-RA | 2131 | CG32557-RA | 122..2057 | 16..1951 | 9680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17853032..17854030 | 1951..953 | 4995 | 100 | Minus |
| X | 23542271 | X | 17854100..17854741 | 954..313 | 3210 | 100 | Minus |
| X | 23542271 | X | 17855226..17855454 | 316..88 | 1145 | 100 | Minus |
| X | 23542271 | X | 17855931..17856008 | 93..16 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:04:02 has no hits.
BO12828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:55 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 1..1938 | 17..1952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:28 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 117..2051 | 17..1953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:36 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 123..2057 | 17..1953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:56 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 109..2051 | 7..1951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:15 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 123..2057 | 17..1953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:15 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17853030..17854029 | 954..1953 | 99 | <- | Minus |
| X | 17854101..17854737 | 317..953 | 100 | <- | Minus |
| X | 17855226..17855452 | 90..316 | 100 | <- | Minus |
| X | 17855935..17856007 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:36 Download gff for
BO12828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17747063..17748062 | 954..1953 | 99 | <- | Minus |
| arm_X | 17748134..17748770 | 317..953 | 100 | <- | Minus |
| arm_X | 17749259..17749485 | 90..316 | 100 | <- | Minus |
| arm_X | 17749968..17750040 | 17..89 | 100 | | Minus |
BO12828.pep Sequence
Translation from 16 to 1969
> BO12828.pep
MKFNLVQTLVFTLCLISVQIYGIQDASGKRIVSKYERIMQMYPQLSSGAG
ESSQWRAAEKDNQRHPCRRDCADKQPMTCYYYMVVHYDDTMAETCKRYLQ
SKFRFKLSGKEYIDGIALATQLAANDDCKYADGLESEVMVVNGQLPGMNI
EVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIEAGQ
AFRYRFEVDHGGTNWWHSHTEHQRAFGLAGPLVVRMPPKLNPHAHLYDFD
MSEHVIMIQDWVHNFVESVAENILINGRGRNLKKGVKAAKPTLYAHFPVV
RGGRYRFRVIFNGVSNCPISFSIDKHDLVVIASDGNDIEPVEVQRIMFHG
AERFDFVLHANQEVSNYWIRVKGYSFCAKNQLHQEAVLHYRDADTRALDT
HTLSYAYDAPGKTLNELGDDASGARAGNSISLANLNAQRPEPEVAPSVTF
YTSMNAFEVRQGEGFRFQMDDISFSMPKMSLLQTRNLGVGQFFCNRSQQA
DLGFNCRQRHCQCSNVIQVPANQQVEFVISSLSQTPHPIHLHGYTFRVVG
MGVLGEQKIGQIEQIDKKTPLPRRAKGAPLKDSVQVPAFGYTILRFYSNS
PGYWMFHCHISPHSENGMAAVVRVGEDVEMKMCPVSNCGLCSSVAASFLD
H
BO12828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-PA | 645 | CG32557-PA | 1..645 | 1..645 | 3463 | 100 | Plus |
| MCO3-PA | 677 | CG5959-PA | 96..672 | 61..634 | 1178 | 40.6 | Plus |
| Mco1-PC | 959 | CG3759-PC | 222..905 | 44..639 | 1003 | 35.7 | Plus |
| Mco1-PB | 959 | CG3759-PB | 222..905 | 44..639 | 1003 | 35.7 | Plus |
| Mco1-PA | 959 | CG3759-PA | 222..905 | 44..639 | 1003 | 35.7 | Plus |
