Clone BO12830 Report

Search the DGRC for BO12830

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptnonA-RA
Protein status:BO12830.pep:
Sequenced Size:2134

Clone Sequence Records

BO12830.3prime Sequence

777 bp (716 high quality bases) assembled on 2006-05-08

> BO12830.3prime
ATGGTCTAGAAAGCTTGCAAAACGTCGACGTCCCCATGGGACATTATTTC
CTCCGCCATTATTTCCACGTTGATTGCCGCCTTGGTTCATATTGTTAACC
CCAAATTCAAAAGCGAAGGAGTCCTGTGTGTTGGGGGCAGCATTGTTTCC
AATCATTGTGGAATTGTTATTGTTATTGCCTCTAAAAACCTCGAATGGCG
AATTGCTATTGCCAGCGAAGTTGTCAAAAGTGGAGTTGTTACCGCCGCCG
CCGCCACCAAATCCCTCCTGCTGATCCAGCAACGAATTGAGCTGCTGTGC
CTTCATGAACAGTGTCTCCTGCTGCCGACGGAGCATGTCCTCCTCCTGGC
GATTCATGTGGCTCTGCATCTCGGTCTGATGACGTCGCATGGTCTCCTCC
TCGCGCTTGCGCATCTCCTCGGCCTGCTTCTCGCGCATCTCCCACTCCAA
TTTCTTGCGCTCGTTGTCAACTTCGCGTTTTCGCAGCTCTTGACGCAACA
GTTCAGTTTCTTGCTCATAGCGTGCATACTCCATCTGAGCCTCCAACTTG
TCCTCCTCCATTTTCAGTTCGCGTTTGAGCGCGTCCTGCTTGGTTTTGAA
CAAATTGTGCAGCTGCTTCCAGCGCGAACCGTACTCGTGCTCAAACGAAT
TGGGATCGGCGAAGCGCGGACCAATGCTACGCTCCTGGTTGAAGTCGGGC
ATCTTTTTGTTGAACGCCTTCTCCGGCAGTCCGTCGGTATCGTCATTCAC
CTCCATCGGATCAACCAGACACGGTCG

BO12830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4211-PA 2103 nonA-RA 1342..2100 777..19 3795 100 Minus
CG4211-PB 2229 nonA-RB 1342..1997 777..122 3280 100 Minus
CG4211-PC 2097 nonA-RC 1342..1996 777..123 3275 100 Minus
CG10328-PA 1893 nonA-l-RA 1537..1592 468..413 155 91 Minus
CG10328-PA 1893 nonA-l-RA 1439..1478 566..527 150 95 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 6746 CG4211-RD 1471..2229 777..19 3795 100 Minus
nonA-RA 3747 CG4211-RA 1471..2229 777..19 3795 100 Minus
nonA-RB 2358 CG4211-RB 1471..2126 777..122 3280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16365203..16365514 490..179 1560 100 Minus
X 23542271 X 16364342..16364630 777..489 1445 100 Minus
3R 32079331 3R 16641558..16641937 774..395 760 80 Minus
2R 25286936 2R 4731707..4731912 707..489 665 89 Minus
X 23542271 X 16366902..16367008 125..19 535 100 Minus
X 23542271 X 16365585..16365643 181..123 295 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:24:21 has no hits.

BO12830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:07 Download gff for BO12830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4211-PA 1342..2103 18..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:51 Download gff for BO12830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4211-PA 1342..2103 18..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:49 Download gff for BO12830.3prime
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 1471..2229 19..777 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:25 Download gff for BO12830.3prime
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 1471..2229 19..777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:25 Download gff for BO12830.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16365205..16365513 180..488 100 -> Minus
X 16365587..16365642 124..179 100 -> Minus
X 16366904..16367008 19..123 100   Minus
X 16364342..16364630 489..777 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:49 Download gff for BO12830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16258375..16258663 489..777 100 -> Minus
arm_X 16259238..16259546 180..488 100 -> Minus
arm_X 16259620..16259675 124..179 100 -> Minus
arm_X 16260937..16261041 19..123 100   Minus

BO12830.5prime Sequence

814 bp (739 high quality bases) assembled on 2006-05-08

> BO12830.5prime
GAAGTTATCAGTCGACATGGAAAGTGCGGGGAAACAAGATAATAACGCCA
CGCAACAGTTGCCGCAGCGACAGCAGCGGGGAAACCAGCAGGCCAACAAA
AATCTCGGCAAGCATAATGCACAAAAACAAAATGATTCCGCGGACGGAGG
CCCGGCTGAAAAGAAGCAACGATTCGGTGGTCCAAATGCCCAGAATCAAA
ACCAGAACCAGAATCAAAATGGTGGTGTAACGGGCGGTGGTGGTGCAGTT
GGTGGCCCCAATCAAAATAAGAATTTTGGAAACAACAAGGGTGGGTTCGT
TGGAAACCGCAATCGCAACAATAATCGCGCTGGAAACCAAAACCGGACTT
TTCCAGGCAACAACAATCCAAATCAAAAGCCCAATAACGAAACATCAAAG
GCGGACGGCCCTAATGCACTTGCTAAGAACAATGAACCGGCAACTGCAGC
TGCTGGCCAAAATCAAGCGAATCAGAACGCCAACAAGGGCCAAAATCAAC
GGCAAGGACAAAACCAAAATCAAAATCAAGTCCATGGTCAAGGAAATCAA
GGAGGACCAGGAAATCAAGGGGGAGCAGGCAATCAAGGAGGCCAAGGAAA
TCAAGGAGGAGCCGGAAATCAGGGAAATGGTCAAGGATTCAGAGGTCGCA
ATGCTGGTAACAATCAAGGTGGCGGTTTCTCCGGAGGTCCGCAGAACCAG
CAGCGTGACAACCGAAACCGGAGTGGTCCACGCCCTGGCGGAGGTGCTGG
TGGCGCGATGAACAGCACCAATATGGGTGGTGGTGGTGGTGGCGGTGGAG
GCGGTGGTCCGCGC

BO12830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4211-PB 2229 nonA-RB 1..798 17..814 3990 100 Plus
CG4211-PA 2103 nonA-RA 1..798 17..814 3990 100 Plus
CG4211-PC 2097 nonA-RC 1..798 17..814 3990 100 Plus
CG17706-PA 387 CG17706-RA 68..321 450..703 1045 96.4 Plus
CG12460-PA 924 CG12460-RA 357..567 524..734 780 94.7 Plus
CG12460-PA 924 CG12460-RA 1..139 63..201 520 94.9 Plus
CG12460-PA 924 CG12460-RA 247..354 416..523 465 97.2 Plus
CG12460-PA 924 CG12460-RA 141..243 271..373 365 94.1 Plus
CG17706-PA 387 CG17706-RA 349..387 723..761 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 6746 CG4211-RD 130..927 17..814 3990 100 Plus
nonA-RC 5008 CG4211-RC 130..927 17..814 3990 100 Plus
nonA-RA 3747 CG4211-RA 130..927 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16363358..16363798 374..814 2205 100 Plus
X 23542271 X 16361698..16362054 17..373 1785 100 Plus
2R 25286936 2R 4730823..4731241 784..374 1535 92 Minus
3L 28110227 3L 24534656..24535027 416..786 1480 94.4 Plus
Blast to na_te.dros performed on 2015-02-11 16:51:02 has no hits.

BO12830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:08 Download gff for BO12830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4211-PC 1..798 17..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:52 Download gff for BO12830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4211-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:07:02 Download gff for BO12830.5prime
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..927 17..814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:09 Download gff for BO12830.5prime
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..927 17..814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:09 Download gff for BO12830.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16361698..16362054 17..373 100 -> Plus
X 16363358..16363798 374..814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:07:02 Download gff for BO12830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16255731..16256087 17..373 100 -> Plus
arm_X 16257391..16257831 374..814 100   Plus

BO12830.complete Sequence

2134 bp assembled on 2008-01-17

GenBank Submission: FJ632593

> BO12830.complete
GAAGTTATCAGTCGACATGGAAAGTGCGGGGAAACAAGATAATAACGCCA
CGCAACAGTTGCCGCAGCGACAGCAGCGGGGAAACCAGCAGGCCAACAAA
AATCTCGGCAAGCATAATGCACAAAAACAAAATGATTCCGCGGACGGAGG
CCCGGCTGAAAAGAAGCAACGATTCGGTGGTCCAAATGCCCAGAATCAAA
ACCAGAACCAGAATCAAAATGGTGGTGTAACGGGCGGTGGTGGTGCAGTT
GGTGGCCCCAATCAAAATAAGAATTTTGGAAACAACAAGGGTGGGTTCGT
TGGAAACCGCAATCGCAACAATAATCGCGCTGGAAACCAAAACCGGACTT
TTCCAGGCAACAACAATCCAAATCAAAAGCCCAATAACGAAACATCAAAG
GCGGACGGCCCTAATGCACTTGCTAAGAACAATGAACCGGCAACTGCAGC
TGCTGGCCAAAATCAAGCGAATCAGAACGCCAACAAGGGCCAAAATCAAC
GGCAAGGACAAAACCAAAATCAAAATCAAGTCCATGGTCAAGGAAATCAA
GGAGGACCAGGAAATCAAGGGGGAGCAGGCAATCAAGGAGGCCAAGGAAA
TCAAGGAGGAGCCGGAAATCAGGGAAATGGTCAAGGATTCAGAGGTCGCA
ATGCTGGTAACAATCAAGGTGGCGGTTTCTCCGGAGGTCCGCAGAACCAG
CAGCGTGACAACCGAAACCGGAGTGGTCCACGCCCTGGCGGAGGTGCTGG
TGGCGCGATGAACAGCACCAATATGGGTGGTGGTGGTGGTGGCGGTGGAG
GCGGTGGTCCGCGCGGCGGTGAAGACTTCTTCATTACCCAGCGGTTACGC
AGCATTTCTGGGCCCACCTTTGAACTGGAACCGGTGGAAGTGCCCACGGA
GACGAAGTTCTCTGGACGAAATCGTCTCTATGTGGGCAACCTGACCAATG
ACATCACCGACGATGAGCTGCGCGAGATGTTCAAGCCATATGGCGAGATT
AGCGAGATCTTCTCGAACCTGGATAAGAACTTTACATTCCTAAAGGTCGA
CTATCATCCCAATGCCGAGAAGGCTAAACGCGCCCTGGACGGATCGATGC
GAAAGGGTCGCCAGTTGCGTGTACGATTCGCACCGAATGCCACCATTTTG
CGGGTGAGCAATCTCACACCGTTCGTTTCCAACGAGCTGCTGTACAAGTC
TTTCGAAATCTTTGGTCCCATCGAGAGGGCCAGCATCACCGTCGACGATC
GTGGCAAGCATATGGGCGAGGGCATAGTTGAGTTTGCCAAAAAGTCATCG
GCCAGCGCCTGTCTGCGGATGTGCAATGAGAAGTGCTTCTTCCTGACTGC
TTCCCTTCGACCGTGTCTGGTTGATCCGATGGAGGTGAATGACGATACCG
ACGGACTGCCGGAGAAGGCGTTCAACAAAAAGATGCCCGACTTCAACCAG
GAGCGTAGCATTGGTCCGCGCTTCGCCGATCCCAATTCGTTTGAGCACGA
GTACGGTTCGCGCTGGAAGCAGCTGCACAATTTGTTCAAAACCAAGCAGG
ACGCGCTCAAACGCGAACTGAAAATGGAGGAGGACAAGTTGGAGGCTCAG
ATGGAGTATGCACGCTATGAGCAAGAAACTGAACTGTTGCGTCAAGAGCT
GCGAAAACGCGAAGTTGACAACGAGCGCAAGAAATTGGAGTGGGAGATGC
GCGAGAAGCAGGCCGAGGAGATGCGCAAGCGCGAGGAGGAGACCATGCGA
CGTCATCAGACCGAGATGCAGAGCCACATGAATCGCCAGGAGGAGGACAT
GCTCCGTCGGCAGCAGGAGACACTGTTCATGAAGGCACAGCAGCTCAATT
CGTTGCTGGATCAGCAGGAGGGATTTGGTGGCGGCGGCGGCGGTAACAAC
TCCACTTTTGACAACTTCGCTGGCAATAGCAATTCGCCATTCGAGGTTTT
TAGAGGCAATAACAATAACAATTCCACAATGATTGGAAACAATGCTGCCC
CCAACACACAGGACTCCTTCGCTTTTGAATTTGGGGTTAACAATATGAAC
CAAGGCGGCAATCAACGTGGAAATAATGGCGGAGGAAATAATGTCCCATG
GGGACGTCGACGTTTTGCAAGCTTTCTAGACCAT

BO12830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 2103 CG4211-PD 1..2100 17..2116 10500 100 Plus
nonA-RA 2103 CG4211-PA 1..2100 17..2116 10500 100 Plus
nonA-RB 2229 CG4211-PB 1..1997 17..2013 9985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 6746 CG4211-RD 130..2229 17..2116 10500 100 Plus
nonA-RA 3747 CG4211-RA 130..2229 17..2116 10500 100 Plus
nonA-RB 2358 CG4211-RB 130..2126 17..2013 9985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16363358..16364630 374..1646 6365 100 Plus
2R 25286936 2R 4730496..4731241 1113..374 2570 90.9 Minus
X 23542271 X 16361698..16362054 17..373 1785 100 Plus
3L 28110227 3L 24534656..24535110 416..875 1695 92.6 Plus
X 23542271 X 16365203..16365514 1645..1956 1560 100 Plus
3R 32079331 3R 16641129..16641937 929..1740 1505 79.3 Plus
2R 25286936 2R 4731512..4731912 1224..1646 1160 87.6 Plus
3L 28110227 3L 24535120..24535435 1050..1381 1155 91.3 Plus
3L 28110227 3L 24534090..24534373 63..373 855 86.5 Plus
X 23542271 X 16366902..16367008 2010..2116 535 100 Plus
Y 3667352 Y 691961..692084 221..345 470 93.6 Plus
Y 3667352 Y 692116..692208 424..522 325 90.9 Plus
X 23542271 X 16365585..16365643 1954..2012 295 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:41:37 has no hits.

BO12830.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:57 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 1..2103 17..2117 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:18 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 166..2265 17..2118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:36 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..2229 17..2118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:57 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 166..2265 17..2116 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:22 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..2229 17..2118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:22 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
X 16361698..16362054 17..373 100 -> Plus
X 16363358..16364630 374..1646 100 -> Plus
X 16365205..16365513 1647..1955 100 -> Plus
X 16365587..16365642 1956..2011 100 -> Plus
X 16366904..16367008 2012..2118 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:36 Download gff for BO12830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16255731..16256087 17..373 100 -> Plus
arm_X 16257391..16258663 374..1646 100 -> Plus
arm_X 16259238..16259546 1647..1955 100 -> Plus
arm_X 16259620..16259675 1956..2011 100 -> Plus
arm_X 16260937..16261041 2012..2118 98   Plus

BO12830.pep Sequence

Translation from 16 to 2134

> BO12830.pep
MESAGKQDNNATQQLPQRQQRGNQQANKNLGKHNAQKQNDSADGGPAEKK
QRFGGPNAQNQNQNQNQNGGVTGGGGAVGGPNQNKNFGNNKGGFVGNRNR
NNNRAGNQNRTFPGNNNPNQKPNNETSKADGPNALAKNNEPATAAAGQNQ
ANQNANKGQNQRQGQNQNQNQVHGQGNQGGPGNQGGAGNQGGQGNQGGAG
NQGNGQGFRGRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGGAMNS
TNMGGGGGGGGGGGPRGGEDFFITQRLRSISGPTFELEPVEVPTETKFSG
RNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNA
EKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFG
PIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPC
LVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRW
KQLHNLFKTKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREV
DNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQEEDMLRRQQ
ETLFMKAQQLNSLLDQQEGFGGGGGGNNSTFDNFAGNSNSPFEVFRGNNN
NNSTMIGNNAAPNTQDSFAFEFGVNNMNQGGNQRGNNGGGNNVPWGRRRF
ASFLDH

BO12830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-PD 700 CG4211-PD 1..700 1..700 3751 100 Plus
nonA-PA 700 CG4211-PA 1..700 1..700 3751 100 Plus
nonA-PB 742 CG4211-PB 1..677 1..677 3554 98.4 Plus
nonA-PC 698 CG4211-PC 1..665 1..665 3551 100 Plus
nonA-l-PB 630 CG10328-PB 1..630 1..700 1879 60 Plus