Clone Sequence Records
BO12831.3prime Sequence
892 bp (709 high quality bases) assembled on 2006-05-08
> BO12831.3prime
ATGGTCTAGAAAGCTTGCATATCTGTAGTAATTGGCTTTAAAAGGCCCGG
CCTTGTTTAAGCCCATAAACTTGGACTGCTCATCCGTGAGCTCCGTGAGA
TGAGCATCGAAGGTGGCGAGATGCAAACTGGCCACGTATTCATCCATTTT
CTTTGGCAGCAGGTAGACATCCGACTTATATCTTCCTGGCGCTGAGAAGA
GTTCAATCAGGGCCAAAGCCTGGGTGGATGAGGCCACGGATACGACAAAG
GACGAAATGGTGGAACAGGACAAATTCACCAGTCTTCCCTCGGCGAGCAA
AATGATCATCCTGCCGTCCGGCCACCTGATGTGATCCACTTGAGAACGGA
CACGCTCCCACGTTAGCTCCGGGGTATGCAAGCCATTCACATCAATCTCC
GAGCAGGAATGTCCCATATTGCAGAGGATACAACCATTCTTCATGCGATT
CATGTGATCCCTGGTAATAACATTTTTGTTTCCAGTTGCCGTAACCACCA
CATCCACCGTCCTGATGACCTCGTTGAGCCGTACCACCCGGAATCCATCC
ATGGCAGCTTGTAGAGCACATATGGGATCCACTTCCGTAACATAAACAAT
GCATCCTTGGCCCTTCAGGGACTGGGCACAGCCCTTTCCCACATCACCGT
ACCCACAGATCACCACCTGCTTTCCGCCAAACATTATATCCGTGGTGCGT
TTCAGACTGTCCAGGATGGAGTCACGACACGTGTAGAAAGTATCAAACTT
GTTCTTGGTCACTGAGTCGTTAACGTTGATGGCCGGAACAGTAAGTTTTC
CGCCCTTTGACAGCATGTACAGCCGGTGCACCCCGGTCACACTTTCCTCC
ACGATGCCCCGAATGGCCTTGAAGTAGTCGGGGTACTTCTTG
BO12831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8956-PC | 1479 | Ahcy89E-RC | 603..1476 | 892..19 | 4370 | 100 | Minus |
CG8956-PD | 1515 | Ahcy89E-RD | 603..1472 | 892..23 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ahcy89E-RC | 1780 | CG8956-RC | 826..1699 | 892..19 | 4370 | 100 | Minus |
Ahcy89E-RD | 1969 | CG8956-RD | 949..1818 | 892..23 | 4350 | 100 | Minus |
CG9977-RA | 3020 | CG9977-RA | 1256..2093 | 859..25 | 885 | 74 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16979087..16979408 | 388..709 | 1610 | 100 | Plus |
3R | 32079331 | 3R | 16978780..16979024 | 144..388 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 16979477..16979662 | 707..892 | 930 | 100 | Plus |
3R | 32079331 | 3R | 16978590..16978711 | 23..144 | 610 | 100 | Plus |
3L | 28110227 | 3L | 2769393..2769923 | 25..552 | 505 | 73.4 | Plus |
3L | 28110227 | 3L | 2770046..2770294 | 611..859 | 360 | 76.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:48:33 has no hits.
BO12831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:09 Download gff for
BO12831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8956-PB | 603..1479 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:53 Download gff for
BO12831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8956-PC | 603..1479 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:20:12 Download gff for
BO12831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 826..1702 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:57 Download gff for
BO12831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 826..1702 | 15..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:57 Download gff for
BO12831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16978586..16978710 | 18..143 | 98 | <- | Plus |
3R | 16978780..16979023 | 144..387 | 100 | <- | Plus |
3R | 16979087..16979405 | 388..706 | 100 | <- | Plus |
3R | 16979477..16979662 | 707..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:20:12 Download gff for
BO12831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12804308..12804432 | 18..143 | 98 | <- | Plus |
arm_3R | 12804502..12804745 | 144..387 | 100 | <- | Plus |
arm_3R | 12804809..12805127 | 388..706 | 100 | <- | Plus |
arm_3R | 12805199..12805384 | 707..892 | 100 | | Plus |
BO12831.5prime Sequence
795 bp (793 high quality bases) assembled on 2006-05-08
> BO12831.5prime
GAAGTTATCAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACC
TGAGTCTGGCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGG
CGGTTTTCTGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGG
AAGCTCCGACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACT
CCGCCGGAGGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTT
GGAAGGCGGGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGAC
TCTGAGGAAAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCG
TCGGATGCACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTC
GTCCAACTGGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCAC
ACAAAACGCAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCG
CCTGGCGCGGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCC
ATCTACTCCGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGA
TGCCACGCACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTC
GGGGCATCGTGGAGGAAAGTGTGACCGGGGTGCACCGGCTGTACATGCTG
TCAAAGGGCGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGT
GACCAAGAACAAGTTTGATACTTTCTACACGTGTCGTGACTCCAT
BO12831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8956-PC | 1479 | Ahcy89E-RC | 1..779 | 17..795 | 3895 | 100 | Plus |
CG8956-PD | 1515 | Ahcy89E-RD | 1..779 | 17..795 | 3895 | 100 | Plus |
CG9977-PA | 1566 | CG9977-RA | 553..606 | 485..538 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ahcy89E-RD | 1969 | CG8956-RD | 347..1125 | 17..795 | 3895 | 100 | Plus |
Ahcy89E-RC | 1780 | CG8956-RC | 224..1002 | 17..795 | 3895 | 100 | Plus |
CG9977-RA | 3020 | CG9977-RA | 848..1372 | 244..768 | 795 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16979486..16980143 | 795..138 | 3290 | 100 | Minus |
3L | 28110227 | 3L | 2770178..2770491 | 768..455 | 415 | 75.5 | Minus |
3L | 28110227 | 3L | 2771272..2771478 | 450..244 | 375 | 78.7 | Minus |
3R | 32079331 | 3R | 16980294..16980365 | 137..66 | 360 | 100 | Minus |
3R | 32079331 | 3R | 16981639..16981689 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:14:14 has no hits.
BO12831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:10 Download gff for
BO12831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8956-PD | 1..779 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:55 Download gff for
BO12831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8956-PD | 1..779 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:42 Download gff for
BO12831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 220..1002 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:43 Download gff for
BO12831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 220..1002 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:43 Download gff for
BO12831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16979486..16980143 | 138..795 | 100 | <- | Minus |
3R | 16980294..16980363 | 68..137 | 100 | <- | Minus |
3R | 16981639..16981693 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:42 Download gff for
BO12831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12805208..12805865 | 138..795 | 100 | <- | Minus |
arm_3R | 12806016..12806085 | 68..137 | 100 | <- | Minus |
arm_3R | 12807361..12807415 | 9..67 | 93 | | Minus |
BO12831.complete Sequence
1510 bp assembled on 2007-10-25
GenBank Submission: FJ632594
> BO12831.complete
GAAGTTATCAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACC
TGAGTCTGGCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGG
CGGTTTTCTGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGG
AAGCTCCGACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACT
CCGCCGGAGGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTT
GGAAGGCGGGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGAC
TCTGAGGAAAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCG
TCGGATGCACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTC
GTCCAACTGGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCAC
ACAAAACGCAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCG
CCTGGCGCGGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCC
ATCTACTCCGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGA
TGCCACGCACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTC
GGGGCATCGTGGAGGAAAGTGTGACCGGGGTGCACCGGCTGTACATGCTG
TCAAAGGGCGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGT
GACCAAGAACAAGTTTGATACTTTCTACACGTGTCGTGACTCCATCCTGG
ACAGTCTGAAACGCACCACGGATATAATGTTTGGCGGAAAGCAGGTGGTG
ATCTGTGGGTACGGTGATGTGGGAAAGGGCTGTGCCCAGTCCCTGAAGGG
CCAAGGATGCATTGTTTATGTTACGGAAGTGGATCCCATATGTGCTCTAC
AAGCTGCCATGGATGGATTCCGGGTGGTACGGCTCAACGAGGTCATCAGG
ACGGTGGATGTGGTGGTTACGGCAACTGGAAACAAAAATGTTATTACCAG
GGATCACATGAATCGCATGAAGAATGGTTGTATCCTCTGCAATATGGGAC
ATTCCTGCTCGGAGATTGATGTGAATGGCTTGCATACCCCGGAGCTAACG
TGGGAGCGTGTCCGTTCTCAAGTGGATCACATCAGGTGGCCGGACGGCAG
GATGATCATTTTGCTCGCCGAGGGAAGACTGGTGAATTTGTCCTGTTCCA
CCATTTCGTCCTTTGTCGTATCCGTGGCCTCATCCACCCAGGCTTTGGCC
CTGATTGAACTCTTCTCAGCGCCAGGAAGATATAAGTCGGATGTCTACCT
GCTGCCAAAGAAAATGGATGAATACGTGGCCAGTTTGCATCTCGCCACCT
TCGATGCTCATCTCACGGAGCTCACGGATGAGCAGTCCAAGTTTATGGGC
TTAAACAAGGCCGGGCCTTTTAAAGCCAATTACTACAGATATGCAAGCTT
TCTAGACCAT
BO12831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ahcy89E-RC | 1479 | CG8956-PC | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Ahcy89E-RD | 1515 | CG8956-PD | 1..1472 | 17..1488 | 7360 | 100 | Plus |
CG9977-RA | 1566 | CG9977-PA | 312..1557 | 244..1486 | 1470 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ahcy89E-RC | 1780 | CG8956-RC | 224..1699 | 17..1492 | 7380 | 100 | Plus |
Ahcy89E-RD | 1969 | CG8956-RD | 347..1818 | 17..1488 | 7360 | 100 | Plus |
CG9977-RA | 3020 | CG9977-RA | 848..2093 | 244..1486 | 1470 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16979477..16980143 | 804..138 | 3335 | 100 | Minus |
3R | 32079331 | 3R | 16979087..16979408 | 1123..802 | 1610 | 100 | Minus |
3R | 32079331 | 3R | 16978780..16979024 | 1367..1123 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 16978590..16978711 | 1488..1367 | 610 | 100 | Minus |
3L | 28110227 | 3L | 2770046..2770491 | 900..455 | 610 | 75.8 | Minus |
3L | 28110227 | 3L | 2769393..2769923 | 1486..959 | 505 | 73.4 | Minus |
3L | 28110227 | 3L | 2771272..2771478 | 450..244 | 375 | 78.7 | Minus |
3R | 32079331 | 3R | 16980294..16980365 | 137..66 | 360 | 100 | Minus |
3R | 32079331 | 3R | 16981639..16981689 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:45:20 has no hits.
BO12831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:59 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 1..1479 | 17..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:38 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 217..1699 | 9..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:45 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 224..1699 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:45 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 221..1696 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:44 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ahcy89E-RC | 224..1699 | 17..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:44 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16978585..16978710 | 1368..1494 | 97 | <- | Minus |
3R | 16978780..16979023 | 1124..1367 | 100 | <- | Minus |
3R | 16979087..16979405 | 805..1123 | 100 | <- | Minus |
3R | 16979477..16980143 | 138..804 | 100 | <- | Minus |
3R | 16980294..16980363 | 68..137 | 100 | <- | Minus |
3R | 16981639..16981689 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:45 Download gff for
BO12831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12804307..12804432 | 1368..1494 | 97 | <- | Minus |
arm_3R | 12804502..12804745 | 1124..1367 | 100 | <- | Minus |
arm_3R | 12804809..12805127 | 805..1123 | 100 | <- | Minus |
arm_3R | 12805199..12805865 | 138..804 | 100 | <- | Minus |
arm_3R | 12806016..12806085 | 68..137 | 100 | <- | Minus |
arm_3R | 12807361..12807411 | 17..67 | 100 | | Minus |
BO12831.pep Sequence
Translation from 16 to 1510
> BO12831.pep
MAKMPETTFADLSLADKTAVKKSSIEARRFSDVSTCSFSSTCFTGSSDEE
DVSPKDNHQRNSAGGTDFCVKSISKSAFGRREIEIAESEMPGIMTLRKRA
KDEKPLKGANIVGCTHVNAQSAVLIETLVQLGATVRWAACNIYSTQNAVA
AALAEAGIPIFAWRGETEEEFWWCLDRAIYSDGWQPNLILDDGGDATHLM
LKKYPDYFKAIRGIVEESVTGVHRLYMLSKGGKLTVPAINVNDSVTKNKF
DTFYTCRDSILDSLKRTTDIMFGGKQVVICGYGDVGKGCAQSLKGQGCIV
YVTEVDPICALQAAMDGFRVVRLNEVIRTVDVVVTATGNKNVITRDHMNR
MKNGCILCNMGHSCSEIDVNGLHTPELTWERVRSQVDHIRWPDGRMIILL
AEGRLVNLSCSTISSFVVSVASSTQALALIELFSAPGRYKSDVYLLPKKM
DEYVASLHLATFDAHLTELTDEQSKFMGLNKAGPFKANYYRYASFLDH
BO12831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ahcy89E-PC | 492 | CG8956-PC | 1..492 | 1..492 | 2566 | 100 | Plus |
Ahcy89E-PD | 504 | CG8956-PD | 1..496 | 1..496 | 2563 | 99.2 | Plus |
CG9977-PA | 521 | CG9977-PA | 43..521 | 18..492 | 1976 | 76.8 | Plus |
Ahcy13-PC | 432 | CG11654-PC | 8..432 | 70..492 | 1146 | 52 | Plus |
Ahcy13-PA | 432 | CG11654-PA | 8..432 | 70..492 | 1146 | 52 | Plus |