Clone BO12831 Report

Search the DGRC for BO12831

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptAhcy89E-RC
Protein status:BO12831.pep: validated full length
Sequenced Size:1510

Clone Sequence Records

BO12831.3prime Sequence

892 bp (709 high quality bases) assembled on 2006-05-08

> BO12831.3prime
ATGGTCTAGAAAGCTTGCATATCTGTAGTAATTGGCTTTAAAAGGCCCGG
CCTTGTTTAAGCCCATAAACTTGGACTGCTCATCCGTGAGCTCCGTGAGA
TGAGCATCGAAGGTGGCGAGATGCAAACTGGCCACGTATTCATCCATTTT
CTTTGGCAGCAGGTAGACATCCGACTTATATCTTCCTGGCGCTGAGAAGA
GTTCAATCAGGGCCAAAGCCTGGGTGGATGAGGCCACGGATACGACAAAG
GACGAAATGGTGGAACAGGACAAATTCACCAGTCTTCCCTCGGCGAGCAA
AATGATCATCCTGCCGTCCGGCCACCTGATGTGATCCACTTGAGAACGGA
CACGCTCCCACGTTAGCTCCGGGGTATGCAAGCCATTCACATCAATCTCC
GAGCAGGAATGTCCCATATTGCAGAGGATACAACCATTCTTCATGCGATT
CATGTGATCCCTGGTAATAACATTTTTGTTTCCAGTTGCCGTAACCACCA
CATCCACCGTCCTGATGACCTCGTTGAGCCGTACCACCCGGAATCCATCC
ATGGCAGCTTGTAGAGCACATATGGGATCCACTTCCGTAACATAAACAAT
GCATCCTTGGCCCTTCAGGGACTGGGCACAGCCCTTTCCCACATCACCGT
ACCCACAGATCACCACCTGCTTTCCGCCAAACATTATATCCGTGGTGCGT
TTCAGACTGTCCAGGATGGAGTCACGACACGTGTAGAAAGTATCAAACTT
GTTCTTGGTCACTGAGTCGTTAACGTTGATGGCCGGAACAGTAAGTTTTC
CGCCCTTTGACAGCATGTACAGCCGGTGCACCCCGGTCACACTTTCCTCC
ACGATGCCCCGAATGGCCTTGAAGTAGTCGGGGTACTTCTTG

BO12831.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8956-PC 1479 Ahcy89E-RC 603..1476 892..19 4370 100 Minus
CG8956-PD 1515 Ahcy89E-RD 603..1472 892..23 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ahcy89E-RC 1780 CG8956-RC 826..1699 892..19 4370 100 Minus
Ahcy89E-RD 1969 CG8956-RD 949..1818 892..23 4350 100 Minus
CG9977-RA 3020 CG9977-RA 1256..2093 859..25 885 74 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16979087..16979408 388..709 1610 100 Plus
3R 32079331 3R 16978780..16979024 144..388 1225 100 Plus
3R 32079331 3R 16979477..16979662 707..892 930 100 Plus
3R 32079331 3R 16978590..16978711 23..144 610 100 Plus
3L 28110227 3L 2769393..2769923 25..552 505 73.4 Plus
3L 28110227 3L 2770046..2770294 611..859 360 76.3 Plus
Blast to na_te.dros performed on 2015-02-10 14:48:33 has no hits.

BO12831.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:09 Download gff for BO12831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8956-PB 603..1479 15..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:53 Download gff for BO12831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8956-PC 603..1479 15..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:20:12 Download gff for BO12831.3prime
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 826..1702 15..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:57 Download gff for BO12831.3prime
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 826..1702 15..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:57 Download gff for BO12831.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16978586..16978710 18..143 98 <- Plus
3R 16978780..16979023 144..387 100 <- Plus
3R 16979087..16979405 388..706 100 <- Plus
3R 16979477..16979662 707..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:20:12 Download gff for BO12831.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12804308..12804432 18..143 98 <- Plus
arm_3R 12804502..12804745 144..387 100 <- Plus
arm_3R 12804809..12805127 388..706 100 <- Plus
arm_3R 12805199..12805384 707..892 100   Plus

BO12831.5prime Sequence

795 bp (793 high quality bases) assembled on 2006-05-08

> BO12831.5prime
GAAGTTATCAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACC
TGAGTCTGGCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGG
CGGTTTTCTGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGG
AAGCTCCGACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACT
CCGCCGGAGGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTT
GGAAGGCGGGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGAC
TCTGAGGAAAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCG
TCGGATGCACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTC
GTCCAACTGGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCAC
ACAAAACGCAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCG
CCTGGCGCGGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCC
ATCTACTCCGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGA
TGCCACGCACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTC
GGGGCATCGTGGAGGAAAGTGTGACCGGGGTGCACCGGCTGTACATGCTG
TCAAAGGGCGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGT
GACCAAGAACAAGTTTGATACTTTCTACACGTGTCGTGACTCCAT

BO12831.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8956-PC 1479 Ahcy89E-RC 1..779 17..795 3895 100 Plus
CG8956-PD 1515 Ahcy89E-RD 1..779 17..795 3895 100 Plus
CG9977-PA 1566 CG9977-RA 553..606 485..538 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ahcy89E-RD 1969 CG8956-RD 347..1125 17..795 3895 100 Plus
Ahcy89E-RC 1780 CG8956-RC 224..1002 17..795 3895 100 Plus
CG9977-RA 3020 CG9977-RA 848..1372 244..768 795 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16979486..16980143 795..138 3290 100 Minus
3L 28110227 3L 2770178..2770491 768..455 415 75.5 Minus
3L 28110227 3L 2771272..2771478 450..244 375 78.7 Minus
3R 32079331 3R 16980294..16980365 137..66 360 100 Minus
3R 32079331 3R 16981639..16981689 67..17 255 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:14:14 has no hits.

BO12831.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:10 Download gff for BO12831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8956-PD 1..779 17..795 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:55 Download gff for BO12831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8956-PD 1..779 17..795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:42 Download gff for BO12831.5prime
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 220..1002 9..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:43 Download gff for BO12831.5prime
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 220..1002 9..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:43 Download gff for BO12831.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16979486..16980143 138..795 100 <- Minus
3R 16980294..16980363 68..137 100 <- Minus
3R 16981639..16981693 9..67 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:42 Download gff for BO12831.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12805208..12805865 138..795 100 <- Minus
arm_3R 12806016..12806085 68..137 100 <- Minus
arm_3R 12807361..12807415 9..67 93   Minus

BO12831.complete Sequence

1510 bp assembled on 2007-10-25

GenBank Submission: FJ632594

> BO12831.complete
GAAGTTATCAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACC
TGAGTCTGGCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGG
CGGTTTTCTGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGG
AAGCTCCGACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACT
CCGCCGGAGGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTT
GGAAGGCGGGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGAC
TCTGAGGAAAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCG
TCGGATGCACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTC
GTCCAACTGGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCAC
ACAAAACGCAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCG
CCTGGCGCGGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCC
ATCTACTCCGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGA
TGCCACGCACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTC
GGGGCATCGTGGAGGAAAGTGTGACCGGGGTGCACCGGCTGTACATGCTG
TCAAAGGGCGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGT
GACCAAGAACAAGTTTGATACTTTCTACACGTGTCGTGACTCCATCCTGG
ACAGTCTGAAACGCACCACGGATATAATGTTTGGCGGAAAGCAGGTGGTG
ATCTGTGGGTACGGTGATGTGGGAAAGGGCTGTGCCCAGTCCCTGAAGGG
CCAAGGATGCATTGTTTATGTTACGGAAGTGGATCCCATATGTGCTCTAC
AAGCTGCCATGGATGGATTCCGGGTGGTACGGCTCAACGAGGTCATCAGG
ACGGTGGATGTGGTGGTTACGGCAACTGGAAACAAAAATGTTATTACCAG
GGATCACATGAATCGCATGAAGAATGGTTGTATCCTCTGCAATATGGGAC
ATTCCTGCTCGGAGATTGATGTGAATGGCTTGCATACCCCGGAGCTAACG
TGGGAGCGTGTCCGTTCTCAAGTGGATCACATCAGGTGGCCGGACGGCAG
GATGATCATTTTGCTCGCCGAGGGAAGACTGGTGAATTTGTCCTGTTCCA
CCATTTCGTCCTTTGTCGTATCCGTGGCCTCATCCACCCAGGCTTTGGCC
CTGATTGAACTCTTCTCAGCGCCAGGAAGATATAAGTCGGATGTCTACCT
GCTGCCAAAGAAAATGGATGAATACGTGGCCAGTTTGCATCTCGCCACCT
TCGATGCTCATCTCACGGAGCTCACGGATGAGCAGTCCAAGTTTATGGGC
TTAAACAAGGCCGGGCCTTTTAAAGCCAATTACTACAGATATGCAAGCTT
TCTAGACCAT

BO12831.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ahcy89E-RC 1479 CG8956-PC 1..1476 17..1492 7380 100 Plus
Ahcy89E-RD 1515 CG8956-PD 1..1472 17..1488 7360 100 Plus
CG9977-RA 1566 CG9977-PA 312..1557 244..1486 1470 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ahcy89E-RC 1780 CG8956-RC 224..1699 17..1492 7380 100 Plus
Ahcy89E-RD 1969 CG8956-RD 347..1818 17..1488 7360 100 Plus
CG9977-RA 3020 CG9977-RA 848..2093 244..1486 1470 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16979477..16980143 804..138 3335 100 Minus
3R 32079331 3R 16979087..16979408 1123..802 1610 100 Minus
3R 32079331 3R 16978780..16979024 1367..1123 1225 100 Minus
3R 32079331 3R 16978590..16978711 1488..1367 610 100 Minus
3L 28110227 3L 2770046..2770491 900..455 610 75.8 Minus
3L 28110227 3L 2769393..2769923 1486..959 505 73.4 Minus
3L 28110227 3L 2771272..2771478 450..244 375 78.7 Minus
3R 32079331 3R 16980294..16980365 137..66 360 100 Minus
3R 32079331 3R 16981639..16981689 67..17 255 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:45:20 has no hits.

BO12831.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:59 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 1..1479 17..1496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:38 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 217..1699 9..1496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:45 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 224..1699 17..1494 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:45 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 221..1696 17..1494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:44 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
Ahcy89E-RC 224..1699 17..1494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:44 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16978585..16978710 1368..1494 97 <- Minus
3R 16978780..16979023 1124..1367 100 <- Minus
3R 16979087..16979405 805..1123 100 <- Minus
3R 16979477..16980143 138..804 100 <- Minus
3R 16980294..16980363 68..137 100 <- Minus
3R 16981639..16981689 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:45 Download gff for BO12831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12804307..12804432 1368..1494 97 <- Minus
arm_3R 12804502..12804745 1124..1367 100 <- Minus
arm_3R 12804809..12805127 805..1123 100 <- Minus
arm_3R 12805199..12805865 138..804 100 <- Minus
arm_3R 12806016..12806085 68..137 100 <- Minus
arm_3R 12807361..12807411 17..67 100   Minus

BO12831.pep Sequence

Translation from 16 to 1510

> BO12831.pep
MAKMPETTFADLSLADKTAVKKSSIEARRFSDVSTCSFSSTCFTGSSDEE
DVSPKDNHQRNSAGGTDFCVKSISKSAFGRREIEIAESEMPGIMTLRKRA
KDEKPLKGANIVGCTHVNAQSAVLIETLVQLGATVRWAACNIYSTQNAVA
AALAEAGIPIFAWRGETEEEFWWCLDRAIYSDGWQPNLILDDGGDATHLM
LKKYPDYFKAIRGIVEESVTGVHRLYMLSKGGKLTVPAINVNDSVTKNKF
DTFYTCRDSILDSLKRTTDIMFGGKQVVICGYGDVGKGCAQSLKGQGCIV
YVTEVDPICALQAAMDGFRVVRLNEVIRTVDVVVTATGNKNVITRDHMNR
MKNGCILCNMGHSCSEIDVNGLHTPELTWERVRSQVDHIRWPDGRMIILL
AEGRLVNLSCSTISSFVVSVASSTQALALIELFSAPGRYKSDVYLLPKKM
DEYVASLHLATFDAHLTELTDEQSKFMGLNKAGPFKANYYRYASFLDH

BO12831.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ahcy89E-PC 492 CG8956-PC 1..492 1..492 2566 100 Plus
Ahcy89E-PD 504 CG8956-PD 1..496 1..496 2563 99.2 Plus
CG9977-PA 521 CG9977-PA 43..521 18..492 1976 76.8 Plus
Ahcy13-PC 432 CG11654-PC 8..432 70..492 1146 52 Plus
Ahcy13-PA 432 CG11654-PA 8..432 70..492 1146 52 Plus