Clone Sequence Records
BO12833.3prime Sequence
611 bp (610 high quality bases) assembled on 2006-05-08
> BO12833.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTTCGCAGCTTCTGGCTGGACAGCT
CGATGGCATCCAGCCAGAGCTTGAGCTCCTCCGGCTTCTCCGGTCGCTGG
GCAGTTTCCGGATAGGTCTTCAGTACCTCCAGCACATTGCAGTTGGTGAT
GTTCTGCTTGGACATGGCCACCGCGCGTACAAATCCGTCCGAAAGGGTAA
TAAACTGCTGCTCCAGGTAAATGGCCTTGTCGTCCCACCAGATCAGCTTG
GTCTGAATCTTGTACGGATGGAAGATGGGTATGGTGCGGCGGTAGCGAAC
ACTGCTGGCTCCCTGGACGGCACCGCCGCGTCGGTCCCGGATGCGCTCAT
AGAGTCCAGTGAGGGCGTAGAAATGGAAGCGGGCAAAGTCCAGTTCGCGC
AGATAGCGGGCGTTGTTCATGTGCCGGATAAAGATGTCCACGTCCTGCGA
GGTGCACAGTCCATAGATCGTCGTGGTGTCCGTGACCTTGCGCTTCCGCT
GGAACAGCCGGCCGGCGAACACCGTGAACACGCAGCGGATGAAGTAGTTG
ACATCCCAGATTACGTACAGGATCAACAAAACAACCAGCCAAGACATGTC
GACTGATAACT
BO12833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-PA | 582 | CG4666-RA | 1..579 | 597..19 | 2870 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-RB | 1363 | CG4666-RB | 484..1062 | 597..19 | 2880 | 99.8 | Minus |
| CG4666-RA | 1107 | CG4666-RA | 228..806 | 597..19 | 2880 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6076373..6076951 | 19..597 | 2880 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:09:28 has no hits.
BO12833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:13 Download gff for
BO12833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-PA | 1..582 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:59 Download gff for
BO12833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-PA | 1..582 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:38 Download gff for
BO12833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 218..810 | 15..611 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:58 Download gff for
BO12833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 218..810 | 15..611 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:58 Download gff for
BO12833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6076369..6076961 | 15..611 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:38 Download gff for
BO12833.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5970402..5970994 | 15..611 | 98 | | Plus |
BO12833.complete Sequence
613 bp assembled on 2006-10-11
GenBank Submission: FJ632595
> BO12833.complete
GAAGTTATCAGTCGACATGTCTTGGCTGGTTGTTTTGTTGATCCTGTACG
TAATCTGGGATGTCAACTACTTCATCCGCTGCGTGTTCACGGTGTTCGCC
GGCCGGCTGTTCCAGCGGAAGCGCAAGGTCACGGACACCACGACGATCTA
TGGACTGTGCACCTCGCAGGACGTGGACATCTTTATCCGGCACATGAACA
ACGCCCGCTATCTGCGCGAACTGGACTTTGCCCGCTTCCATTTCTACGCC
CTCACTGGACTCTATGAGCGCATCCGGGACCGACGCGGCGGTGCCGTCCA
GGGAGCCAGCAGTGTTCGCTACCGCCGCACCATACCCATCTTCCATCCGT
ACAAGATTCAGACCAAGCTGATCTGGTGGGACGACAAGGCCATTTACCTG
GAGCAGCAGTTTATTACCCTTTCGGACGGATTTGTACGCGCGGTGGCCAT
GTCCAAGCAGAACATCACCAACTGCAATGTGCTGGAGGTACTGAAGACCT
ATCCGGAAACTGCCCAGCGACCGGAGAAGCCGGAGGAGCTCAAGCTCTGG
CTGGATGCCATCGAGCTGTCCAGCCAGAAGCTGCGAAAGGACAAGGCAAG
CTTTCTAGACCAT
BO12833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-RB | 582 | CG4666-PB | 1..579 | 17..595 | 2880 | 99.8 | Plus |
| CG4666-RA | 582 | CG4666-PA | 1..579 | 17..595 | 2880 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-RB | 1363 | CG4666-RB | 484..1062 | 17..595 | 2880 | 99.8 | Plus |
| CG4666-RA | 1107 | CG4666-RA | 228..806 | 17..595 | 2880 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6076373..6076951 | 595..17 | 2880 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:15 has no hits.
BO12833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:04 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:36 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 170..762 | 3..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:52 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 228..806 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:04 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 170..762 | 3..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:48 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 228..806 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:48 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6076370..6076951 | 17..597 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:52 Download gff for
BO12833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5970403..5970984 | 17..597 | 99 | | Minus |
BO12833.pep Sequence
Translation from 16 to 613
> BO12833.pep
MSWLVVLLILYVIWDVNYFIRCVFTVFAGRLFQRKRKVTDTTTIYGLCTS
QDVDIFIRHMNNARYLRELDFARFHFYALTGLYERIRDRRGGAVQGASSV
RYRRTIPIFHPYKIQTKLIWWDDKAIYLEQQFITLSDGFVRAVAMSKQNI
TNCNVLEVLKTYPETAQRPEKPEELKLWLDAIELSSQKLRKDKASFLDH
BO12833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-PB | 193 | CG4666-PB | 1..193 | 1..193 | 1013 | 100 | Plus |
| CG4666-PA | 193 | CG4666-PA | 1..193 | 1..193 | 1013 | 100 | Plus |
| CG4660-PA | 261 | CG4660-PA | 9..167 | 1..159 | 356 | 39.6 | Plus |
