Clone BO12834 Report

Search the DGRC for BO12834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptPp4-19C-RA
Protein status:BO12834.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO12834.3prime Sequence

854 bp (754 high quality bases) assembled on 2006-05-08

> BO12834.3prime
ATGGTCTAGAAAGCTTGCGAGAAAGTAGTCCGCCTGAGGCTTCTTCGAGG
GAATGCCGCGACTCTCTTGCGGAGCTGCCTCAAAGATGACGAAGTCGCGG
TGCAGGTACTCATTCAGCTCCAGGATGGCAGCTACATTGCCGCAGCGATA
GCAGTAATTGGGTGCCGACCAGACGGTCAGGACGGTTTCGTTGAAGTGCC
ACTTGAAGCCCTCCATTACCAACTGGTGTGCACGGCAAATCATGTCGATA
TCGTTCGTGCGGTTGAACTGGGAGACCACGTCCGAGCCAAAGAGATAGCC
AGCGCCGCGCGGCGACACGCCCCAGCCAGTCTGGTCCTCCGGATCGCTCC
AAAGCAGGTCGCACATGGGCCCGTCGTGCGGCACCTCCTGCTTCCGGTCG
ATGCTGCGAATCTGGTCGAGGTACTGGATGGACGGCGACAGCCCGCCGTG
CACGCAGAATATTTTGCCGTCGATGATCGCCGAAAGGCTGAGGTAGTCAA
AGATCTCCGTGCAGTACCGCCACACGGCCGTCGATCCGTACTTGCGCAGG
CACTCATCGTAAAAGCCGTAGACCTGTGTGATTTGGCGCGACTCATGGTT
GCCCCGGATCAGCGTGATTCGGTCCGGATAGCGCACCTTCAGCGCCAACA
GCAGCAGAAACGTCTCCACACTATAGTAGCCGCGGTCCACGAAATCGCCC
ATAAACAGGTAGTTCTTCTCGGGCACATCGCCGCCAACCTTGAACAGCTC
CTTCAGGTCGTAGAACTGACCGTGGATGTCGCCGCACACGGTCACTGGCG
AGTCCACACGCTGCACGTTGCCCTCCTCCACAGGATCTCGCGGGCTTTGG
CGCA

BO12834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32505-PA 924 Pp4-19C-RA 109..921 831..19 4065 100 Minus
CG32505-PE 924 Pp4-19C-RE 109..921 831..19 4065 100 Minus
CG7109-PA 930 mts-RA 349..410 600..539 185 91.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 2159 CG32505-RH 542..1378 854..19 4160 99.9 Minus
Pp4-19C-RG 1856 CG32505-RG 239..1075 854..19 4160 99.9 Minus
Pp4-19C-RF 1977 CG32505-RF 360..1196 854..19 4160 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20422059..20422768 146..854 3500 99.9 Plus
X 23542271 X 20421868..20421995 19..146 640 100 Plus
2L 23513712 2L 7830513..7831022 795..286 510 73.3 Minus
X 23542271 X 16558892..16558962 730..800 205 85.9 Plus
Blast to na_te.dros performed on 2015-02-03 07:30:25 has no hits.

BO12834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:14 Download gff for BO12834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32505-PA 86..924 15..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:00 Download gff for BO12834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32505-PE 86..924 15..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:29 Download gff for BO12834.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RA 337..1176 14..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:42 Download gff for BO12834.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RF 361..1200 14..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:42 Download gff for BO12834.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20421864..20421994 14..145 98 <- Plus
X 20422059..20422767 146..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:29 Download gff for BO12834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20292891..20293021 14..145 98 <- Plus
arm_X 20293086..20293794 146..853 99   Plus

BO12834.5prime Sequence

876 bp (757 high quality bases) assembled on 2006-05-08

> BO12834.5prime
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGCCCGTCTGCTCGGCACCCCATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGAATGAGTAC
CTGCACCGCGACTTCGTCTTCTTTGA

BO12834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32505-PA 924 Pp4-19C-RA 1..860 17..876 4200 99.5 Plus
CG32505-PE 924 Pp4-19C-RE 1..860 17..876 4200 99.5 Plus
CG7109-PA 930 mts-RA 349..410 356..417 185 91.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 2159 CG32505-RH 458..1317 17..876 4240 99.5 Plus
Pp4-19C-RG 1856 CG32505-RG 155..1014 17..876 4240 99.5 Plus
Pp4-19C-RF 1977 CG32505-RF 276..1135 17..876 4240 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20422059..20422852 810..17 3925 99.6 Minus
2L 23513712 2L 7830513..7831022 161..670 510 73.3 Plus
X 23542271 X 20421929..20421995 876..810 320 98.5 Minus
X 23542271 X 16558892..16558962 226..156 205 85.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:39:30 has no hits.

BO12834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:15 Download gff for BO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32505-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:01 Download gff for BO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32505-PE 1..859 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:00:23 Download gff for BO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RA 246..1110 11..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:49 Download gff for BO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RF 270..1134 11..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:49 Download gff for BO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20421930..20421994 811..875 98 <- Minus
X 20422059..20422858 11..810 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:00:23 Download gff for BO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20292957..20293021 811..875 98 <- Minus
arm_X 20293086..20293885 11..810 99   Minus

BO12834.complete Sequence

955 bp assembled on 2006-10-11

GenBank Submission: FJ632596

> BO12834.complete
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGACCGTCTGGTCGGCACCCAATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGAATGAGTAC
CTGCACCGCGACTTCGTCATCTTTGAGGCAGCTCCGCAAGAGAGTCGCGG
CATTCCCTCGAAGAAGCCTCAGGCGGACTACTTTCTCGCAAGCTTTCTAG
ACCAT

BO12834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 924 CG32505-PH 1..921 17..937 4605 100 Plus
Pp4-19C-RG 924 CG32505-PG 1..921 17..937 4605 100 Plus
Pp4-19C-RF 924 CG32505-PF 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-RH 2159 CG32505-RH 458..1378 17..937 4605 100 Plus
Pp4-19C-RG 1856 CG32505-RG 155..1075 17..937 4605 100 Plus
Pp4-19C-RF 1977 CG32505-RF 276..1196 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20422059..20422852 810..17 3970 100 Minus
X 23542271 X 20421868..20421995 937..810 640 100 Minus
2L 23513712 2L 7830513..7831022 161..670 510 73.3 Plus
X 23542271 X 16558892..16558962 226..156 205 85.9 Minus
Blast to na_te.dros performed on 2014-11-27 02:08:34 has no hits.

BO12834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:05 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RE 1..924 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:38 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RE 516..1446 11..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:29 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RA 252..1172 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:05 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RE 516..1446 11..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:18 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
Pp4-19C-RF 276..1196 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:18 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
X 20421866..20421994 811..939 98 <- Minus
X 20422059..20422852 17..810 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:29 Download gff for BO12834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20292893..20293021 811..939 98 <- Minus
arm_X 20293086..20293879 17..810 100   Minus

BO12834.pep Sequence

Translation from 16 to 955

> BO12834.pep
MSDYSDLDRQIEQLKRCEIIKENEVKALCAKAREILVEEGNVQRVDSPVT
VCGDIHGQFYDLKELFKVGGDVPEKNYLFMGDFVDRGYYSVETFLLLLAL
KVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSTAVWRYCTEIFDYL
SLSAIIDGKIFCVHGGLSPSIQYLDQIRSIDRKQEVPHDGPMCDLLWSDP
EDQTGWGVSPRGAGYLFGSDVVSQFNRTNDIDMICRAHQLVMEGFKWHFN
ETVLTVWSAPNYCYRCGNVAAILELNEYLHRDFVIFEAAPQESRGIPSKK
PQADYFLASFLDH

BO12834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pp4-19C-PH 307 CG32505-PH 1..307 1..307 1653 100 Plus
Pp4-19C-PG 307 CG32505-PG 1..307 1..307 1653 100 Plus
Pp4-19C-PF 307 CG32505-PF 1..307 1..307 1653 100 Plus
Pp4-19C-PE 307 CG32505-PE 1..307 1..307 1653 100 Plus
Pp4-19C-PA 307 CG32505-PA 1..307 1..307 1653 100 Plus