Clone Sequence Records
BO12834.3prime Sequence
854 bp (754 high quality bases) assembled on 2006-05-08
> BO12834.3prime
ATGGTCTAGAAAGCTTGCGAGAAAGTAGTCCGCCTGAGGCTTCTTCGAGG
GAATGCCGCGACTCTCTTGCGGAGCTGCCTCAAAGATGACGAAGTCGCGG
TGCAGGTACTCATTCAGCTCCAGGATGGCAGCTACATTGCCGCAGCGATA
GCAGTAATTGGGTGCCGACCAGACGGTCAGGACGGTTTCGTTGAAGTGCC
ACTTGAAGCCCTCCATTACCAACTGGTGTGCACGGCAAATCATGTCGATA
TCGTTCGTGCGGTTGAACTGGGAGACCACGTCCGAGCCAAAGAGATAGCC
AGCGCCGCGCGGCGACACGCCCCAGCCAGTCTGGTCCTCCGGATCGCTCC
AAAGCAGGTCGCACATGGGCCCGTCGTGCGGCACCTCCTGCTTCCGGTCG
ATGCTGCGAATCTGGTCGAGGTACTGGATGGACGGCGACAGCCCGCCGTG
CACGCAGAATATTTTGCCGTCGATGATCGCCGAAAGGCTGAGGTAGTCAA
AGATCTCCGTGCAGTACCGCCACACGGCCGTCGATCCGTACTTGCGCAGG
CACTCATCGTAAAAGCCGTAGACCTGTGTGATTTGGCGCGACTCATGGTT
GCCCCGGATCAGCGTGATTCGGTCCGGATAGCGCACCTTCAGCGCCAACA
GCAGCAGAAACGTCTCCACACTATAGTAGCCGCGGTCCACGAAATCGCCC
ATAAACAGGTAGTTCTTCTCGGGCACATCGCCGCCAACCTTGAACAGCTC
CTTCAGGTCGTAGAACTGACCGTGGATGTCGCCGCACACGGTCACTGGCG
AGTCCACACGCTGCACGTTGCCCTCCTCCACAGGATCTCGCGGGCTTTGG
CGCA
BO12834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32505-PA | 924 | Pp4-19C-RA | 109..921 | 831..19 | 4065 | 100 | Minus |
CG32505-PE | 924 | Pp4-19C-RE | 109..921 | 831..19 | 4065 | 100 | Minus |
CG7109-PA | 930 | mts-RA | 349..410 | 600..539 | 185 | 91.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 2159 | CG32505-RH | 542..1378 | 854..19 | 4160 | 99.9 | Minus |
Pp4-19C-RG | 1856 | CG32505-RG | 239..1075 | 854..19 | 4160 | 99.9 | Minus |
Pp4-19C-RF | 1977 | CG32505-RF | 360..1196 | 854..19 | 4160 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20422059..20422768 | 146..854 | 3500 | 99.9 | Plus |
X | 23542271 | X | 20421868..20421995 | 19..146 | 640 | 100 | Plus |
2L | 23513712 | 2L | 7830513..7831022 | 795..286 | 510 | 73.3 | Minus |
X | 23542271 | X | 16558892..16558962 | 730..800 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:30:25 has no hits.
BO12834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:14 Download gff for
BO12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32505-PA | 86..924 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:00 Download gff for
BO12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32505-PE | 86..924 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:29 Download gff for
BO12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RA | 337..1176 | 14..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:42 Download gff for
BO12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RF | 361..1200 | 14..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:42 Download gff for
BO12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20421864..20421994 | 14..145 | 98 | <- | Plus |
X | 20422059..20422767 | 146..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:29 Download gff for
BO12834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20292891..20293021 | 14..145 | 98 | <- | Plus |
arm_X | 20293086..20293794 | 146..853 | 99 | | Plus |
BO12834.5prime Sequence
876 bp (757 high quality bases) assembled on 2006-05-08
> BO12834.5prime
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGCCCGTCTGCTCGGCACCCCATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGAATGAGTAC
CTGCACCGCGACTTCGTCTTCTTTGA
BO12834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32505-PA | 924 | Pp4-19C-RA | 1..860 | 17..876 | 4200 | 99.5 | Plus |
CG32505-PE | 924 | Pp4-19C-RE | 1..860 | 17..876 | 4200 | 99.5 | Plus |
CG7109-PA | 930 | mts-RA | 349..410 | 356..417 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 2159 | CG32505-RH | 458..1317 | 17..876 | 4240 | 99.5 | Plus |
Pp4-19C-RG | 1856 | CG32505-RG | 155..1014 | 17..876 | 4240 | 99.5 | Plus |
Pp4-19C-RF | 1977 | CG32505-RF | 276..1135 | 17..876 | 4240 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20422059..20422852 | 810..17 | 3925 | 99.6 | Minus |
2L | 23513712 | 2L | 7830513..7831022 | 161..670 | 510 | 73.3 | Plus |
X | 23542271 | X | 20421929..20421995 | 876..810 | 320 | 98.5 | Minus |
X | 23542271 | X | 16558892..16558962 | 226..156 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:39:30 has no hits.
BO12834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:15 Download gff for
BO12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32505-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:01 Download gff for
BO12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32505-PE | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:00:23 Download gff for
BO12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RA | 246..1110 | 11..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:49 Download gff for
BO12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RF | 270..1134 | 11..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:49 Download gff for
BO12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20421930..20421994 | 811..875 | 98 | <- | Minus |
X | 20422059..20422858 | 11..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:00:23 Download gff for
BO12834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20292957..20293021 | 811..875 | 98 | <- | Minus |
arm_X | 20293086..20293885 | 11..810 | 99 | | Minus |
BO12834.complete Sequence
955 bp assembled on 2006-10-11
GenBank Submission: FJ632596
> BO12834.complete
GAAGTTATCAGTCGACATGTCCGACTACAGCGACCTGGACCGACAGATCG
AGCAACTGAAGCGCTGCGAGATCATCAAGGAGAACGAGGTGAAGGCCCTG
TGCGCCAAAGCCCGCGAGATCCTGGTGGAGGAGGGCAACGTGCAGCGTGT
GGACTCGCCAGTGACCGTGTGCGGCGACATCCACGGTCAGTTCTACGACC
TGAAGGAGCTGTTCAAGGTTGGCGGCGATGTGCCCGAGAAGAACTACCTG
TTTATGGGCGATTTCGTGGACCGCGGCTACTATAGTGTGGAGACGTTTCT
GCTGCTGTTGGCGCTGAAGGTGCGCTATCCGGACCGAATCACGCTGATCC
GGGGCAACCATGAGTCGCGCCAAATCACACAGGTCTACGGCTTTTACGAT
GAGTGCCTGCGCAAGTACGGATCGACGGCCGTGTGGCGGTACTGCACGGA
GATCTTTGACTACCTCAGCCTTTCGGCGATCATCGACGGCAAAATATTCT
GCGTGCACGGCGGGCTGTCGCCGTCCATCCAGTACCTCGACCAGATTCGC
AGCATCGACCGGAAGCAGGAGGTGCCGCACGACGGGCCCATGTGCGACCT
GCTTTGGAGCGATCCGGAGGACCAGACTGGCTGGGGCGTGTCGCCGCGCG
GCGCTGGCTATCTCTTTGGCTCGGACGTGGTCTCCCAGTTCAACCGCACG
AACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGGCTT
CAAGTGGCACTTCAACGAAACCGTCCTGACCGTCTGGTCGGCACCCAATT
ACTGCTATCGCTGCGGCAATGTAGCTGCCATCCTGGAGCTGAATGAGTAC
CTGCACCGCGACTTCGTCATCTTTGAGGCAGCTCCGCAAGAGAGTCGCGG
CATTCCCTCGAAGAAGCCTCAGGCGGACTACTTTCTCGCAAGCTTTCTAG
ACCAT
BO12834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 924 | CG32505-PH | 1..921 | 17..937 | 4605 | 100 | Plus |
Pp4-19C-RG | 924 | CG32505-PG | 1..921 | 17..937 | 4605 | 100 | Plus |
Pp4-19C-RF | 924 | CG32505-PF | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-RH | 2159 | CG32505-RH | 458..1378 | 17..937 | 4605 | 100 | Plus |
Pp4-19C-RG | 1856 | CG32505-RG | 155..1075 | 17..937 | 4605 | 100 | Plus |
Pp4-19C-RF | 1977 | CG32505-RF | 276..1196 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20422059..20422852 | 810..17 | 3970 | 100 | Minus |
X | 23542271 | X | 20421868..20421995 | 937..810 | 640 | 100 | Minus |
2L | 23513712 | 2L | 7830513..7831022 | 161..670 | 510 | 73.3 | Plus |
X | 23542271 | X | 16558892..16558962 | 226..156 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:08:34 has no hits.
BO12834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:05 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RE | 1..924 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:38 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RE | 516..1446 | 11..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:29 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RA | 252..1172 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:05 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RE | 516..1446 | 11..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:18 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp4-19C-RF | 276..1196 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:18 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20421866..20421994 | 811..939 | 98 | <- | Minus |
X | 20422059..20422852 | 17..810 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:29 Download gff for
BO12834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20292893..20293021 | 811..939 | 98 | <- | Minus |
arm_X | 20293086..20293879 | 17..810 | 100 | | Minus |
BO12834.pep Sequence
Translation from 16 to 955
> BO12834.pep
MSDYSDLDRQIEQLKRCEIIKENEVKALCAKAREILVEEGNVQRVDSPVT
VCGDIHGQFYDLKELFKVGGDVPEKNYLFMGDFVDRGYYSVETFLLLLAL
KVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSTAVWRYCTEIFDYL
SLSAIIDGKIFCVHGGLSPSIQYLDQIRSIDRKQEVPHDGPMCDLLWSDP
EDQTGWGVSPRGAGYLFGSDVVSQFNRTNDIDMICRAHQLVMEGFKWHFN
ETVLTVWSAPNYCYRCGNVAAILELNEYLHRDFVIFEAAPQESRGIPSKK
PQADYFLASFLDH
BO12834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp4-19C-PH | 307 | CG32505-PH | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PG | 307 | CG32505-PG | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PF | 307 | CG32505-PF | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PE | 307 | CG32505-PE | 1..307 | 1..307 | 1653 | 100 | Plus |
Pp4-19C-PA | 307 | CG32505-PA | 1..307 | 1..307 | 1653 | 100 | Plus |