Clone BO12836 Report

Search the DGRC for BO12836

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG13865-RA
Protein status:BO12836.pep:
Sequenced Size:832

Clone Sequence Records

BO12836.3prime Sequence

799 bp (797 high quality bases) assembled on 2006-05-08

> BO12836.3prime
ATGGTCTAGAAAGCTTGCATTAGGCATGCCCACGCCCTGCTGGAACCCTA
ACGTATCATGCTGCTTCTTCACCTCGTCCTGCATTTCTAGGGCCAGCTTC
TTGTACTTCTCCGCTTCCTTTTCGTTCTTCTCGATCCCATCGCCCCGGGC
GTACATCTGGCTAAGATTGGCACACGCATACATATTGCGAAGCTCGCAAG
CCTTGTGGGCAAACTGGAAAGCCTTCTTCATGTCTTTTAGAACAATATAG
TCGGAGTCCTTTAAAGGCGGTTGTCCGGCGGGGGGTGATGATGTACCACT
TCCGGAGGATGCAGTGACAGCACTCTGATCCGCCTTCTTTTGCACGCCCG
AGATGTGCATCCCGGAGAGATAAAAGCAGGCAGTGGCGTTGTTCAAGTCG
CAGCTTTTGGTCAGAAACTCCAGGCCCTTGGGCACATTCCAGTCGATCTC
CCTAGGCATGGACTTTGAAACGAGCAGCAGGCCGGAGTGAAGACAGGCGT
CCGAGTCGTTTAAGTTACAGCCCTTCTCGTAGTACTCGTAGGCCACTTGT
GGATTCCCCTTGCTACCGCTCTTGCCTTTTCCAAGGAAACTGTAGTTGCC
GTATTTGTAGCAGGACTTTGCGTAACCATAGTCGTCGCAAGTCGACTTGT
ACACCTTGGAGGCCTTTTCAAAGTCTTTCTTGATGCCCTCCAAGTAGTCG
CCCAGCAAGTGGCACGCTTCCGGCTTCTTCTCGGAATAGCACCCGAATCG
ATATTCCACGCCCAGCTTTTCTACGTACTCCTTCACGTCTGACTCCTTC

BO12836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PA 801 CG13865-RA 18..798 799..19 3905 100 Minus
CG13865-PB 441 CG13865-RB 18..391 799..426 1870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 2611 CG13865-RC 105..885 799..19 3905 100 Minus
CG13865-RA 1194 CG13865-RA 105..885 799..19 3905 100 Minus
CG13865-RB 635 CG13865-RB 105..478 799..426 1870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23014860 428..19 2050 100 Minus
X 23542271 X 23013817..23014109 718..426 1465 100 Minus
X 23542271 X 23013599..23013681 799..717 415 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:10:53 has no hits.

BO12836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:59 Download gff for BO12836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-PA 18..801 16..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:56 Download gff for BO12836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 105..896 11..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:17 Download gff for BO12836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 105..896 11..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:17 Download gff for BO12836.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23013599..23013681 717..799 100 -> Minus
X 23013819..23014108 427..716 100 -> Minus
X 23014453..23014871 11..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:56 Download gff for BO12836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415435..22415517 717..799 100 -> Minus
arm_X 22415655..22415944 427..716 100 -> Minus
arm_X 22416289..22416707 11..426 99   Minus

BO12836.5prime Sequence

830 bp (751 high quality bases) assembled on 2006-05-08

> BO12836.5prime
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATGCAAGCTTTCTAGACC

BO12836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PA 801 CG13865-RA 1..798 17..814 3990 100 Plus
CG13865-PB 441 CG13865-RB 1..391 17..407 1955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 2611 CG13865-RC 87..885 16..814 3995 100 Plus
CG13865-RA 1194 CG13865-RA 87..885 16..814 3995 100 Plus
CG13865-RB 635 CG13865-RB 87..478 16..407 1960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23014860 405..814 2050 100 Plus
X 23542271 X 23013817..23014109 115..407 1465 100 Plus
X 23542271 X 23013581..23013681 16..116 505 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:01:40 has no hits.

BO12836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:00 Download gff for BO12836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:35 Download gff for BO12836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 87..896 16..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:18 Download gff for BO12836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 87..896 16..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:18 Download gff for BO12836.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23013581..23013681 16..116 100 -> Plus
X 23013819..23014108 117..406 100 -> Plus
X 23014453..23014871 407..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:35 Download gff for BO12836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415655..22415944 117..406 100 -> Plus
arm_X 22415417..22415517 16..116 100 -> Plus
arm_X 22416289..22416707 407..822 99   Plus

BO12836.complete Sequence

832 bp assembled on 2006-10-11

GenBank Submission: FJ632597

> BO12836.complete
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATGCAAGCTTTCTAGACCAT

BO12836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 801 CG13865-PC 1..798 17..814 3990 100 Plus
CG13865-RA 801 CG13865-PA 1..798 17..814 3990 100 Plus
CG13865-RB 441 CG13865-PB 1..391 17..407 1955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-RC 2611 CG13865-RC 87..885 16..814 3995 100 Plus
CG13865-RA 1194 CG13865-RA 87..885 16..814 3995 100 Plus
CG13865-RB 635 CG13865-RB 87..478 16..407 1960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23014451..23014860 405..814 2050 100 Plus
X 23542271 X 23013817..23014109 115..407 1465 100 Plus
X 23542271 X 23013581..23013681 16..116 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:56:17 has no hits.

BO12836.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:49 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:14 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 71..880 16..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:45 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 88..885 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:49 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 71..880 16..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:38 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
CG13865-RA 88..885 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:38 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013582..23013681 17..116 100 -> Plus
X 23013819..23014108 117..406 100 -> Plus
X 23014453..23014860 407..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:45 Download gff for BO12836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22415418..22415517 17..116 100 -> Plus
arm_X 22415655..22415944 117..406 100 -> Plus
arm_X 22416289..22416696 407..816 99   Plus

BO12836.pep Sequence

Translation from 16 to 832

> BO12836.pep
MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE
KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC
NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL
SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF
QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK
KQHDTLGFQQGVGMPNASFLDH

BO12836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13865-PC 266 CG13865-PC 1..266 1..266 1424 100 Plus
CG13865-PA 266 CG13865-PA 1..266 1..266 1424 100 Plus
CG13865-PB 146 CG13865-PB 1..130 1..130 713 100 Plus