Clone Sequence Records
BO12836.3prime Sequence
799 bp (797 high quality bases) assembled on 2006-05-08
> BO12836.3prime
ATGGTCTAGAAAGCTTGCATTAGGCATGCCCACGCCCTGCTGGAACCCTA
ACGTATCATGCTGCTTCTTCACCTCGTCCTGCATTTCTAGGGCCAGCTTC
TTGTACTTCTCCGCTTCCTTTTCGTTCTTCTCGATCCCATCGCCCCGGGC
GTACATCTGGCTAAGATTGGCACACGCATACATATTGCGAAGCTCGCAAG
CCTTGTGGGCAAACTGGAAAGCCTTCTTCATGTCTTTTAGAACAATATAG
TCGGAGTCCTTTAAAGGCGGTTGTCCGGCGGGGGGTGATGATGTACCACT
TCCGGAGGATGCAGTGACAGCACTCTGATCCGCCTTCTTTTGCACGCCCG
AGATGTGCATCCCGGAGAGATAAAAGCAGGCAGTGGCGTTGTTCAAGTCG
CAGCTTTTGGTCAGAAACTCCAGGCCCTTGGGCACATTCCAGTCGATCTC
CCTAGGCATGGACTTTGAAACGAGCAGCAGGCCGGAGTGAAGACAGGCGT
CCGAGTCGTTTAAGTTACAGCCCTTCTCGTAGTACTCGTAGGCCACTTGT
GGATTCCCCTTGCTACCGCTCTTGCCTTTTCCAAGGAAACTGTAGTTGCC
GTATTTGTAGCAGGACTTTGCGTAACCATAGTCGTCGCAAGTCGACTTGT
ACACCTTGGAGGCCTTTTCAAAGTCTTTCTTGATGCCCTCCAAGTAGTCG
CCCAGCAAGTGGCACGCTTCCGGCTTCTTCTCGGAATAGCACCCGAATCG
ATATTCCACGCCCAGCTTTTCTACGTACTCCTTCACGTCTGACTCCTTC
BO12836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-PA | 801 | CG13865-RA | 18..798 | 799..19 | 3905 | 100 | Minus |
CG13865-PB | 441 | CG13865-RB | 18..391 | 799..426 | 1870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 2611 | CG13865-RC | 105..885 | 799..19 | 3905 | 100 | Minus |
CG13865-RA | 1194 | CG13865-RA | 105..885 | 799..19 | 3905 | 100 | Minus |
CG13865-RB | 635 | CG13865-RB | 105..478 | 799..426 | 1870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23014451..23014860 | 428..19 | 2050 | 100 | Minus |
X | 23542271 | X | 23013817..23014109 | 718..426 | 1465 | 100 | Minus |
X | 23542271 | X | 23013599..23013681 | 799..717 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:10:53 has no hits.
BO12836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:59 Download gff for
BO12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-PA | 18..801 | 16..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:56 Download gff for
BO12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 105..896 | 11..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:17 Download gff for
BO12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 105..896 | 11..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:17 Download gff for
BO12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23013599..23013681 | 717..799 | 100 | -> | Minus |
X | 23013819..23014108 | 427..716 | 100 | -> | Minus |
X | 23014453..23014871 | 11..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:56 Download gff for
BO12836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22415435..22415517 | 717..799 | 100 | -> | Minus |
arm_X | 22415655..22415944 | 427..716 | 100 | -> | Minus |
arm_X | 22416289..22416707 | 11..426 | 99 | | Minus |
BO12836.5prime Sequence
830 bp (751 high quality bases) assembled on 2006-05-08
> BO12836.5prime
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATGCAAGCTTTCTAGACC
BO12836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-PA | 801 | CG13865-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG13865-PB | 441 | CG13865-RB | 1..391 | 17..407 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 2611 | CG13865-RC | 87..885 | 16..814 | 3995 | 100 | Plus |
CG13865-RA | 1194 | CG13865-RA | 87..885 | 16..814 | 3995 | 100 | Plus |
CG13865-RB | 635 | CG13865-RB | 87..478 | 16..407 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23014451..23014860 | 405..814 | 2050 | 100 | Plus |
X | 23542271 | X | 23013817..23014109 | 115..407 | 1465 | 100 | Plus |
X | 23542271 | X | 23013581..23013681 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:01:40 has no hits.
BO12836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:00 Download gff for
BO12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:35 Download gff for
BO12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 87..896 | 16..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:18 Download gff for
BO12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 87..896 | 16..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:18 Download gff for
BO12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23013581..23013681 | 16..116 | 100 | -> | Plus |
X | 23013819..23014108 | 117..406 | 100 | -> | Plus |
X | 23014453..23014871 | 407..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:35 Download gff for
BO12836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22415655..22415944 | 117..406 | 100 | -> | Plus |
arm_X | 22415417..22415517 | 16..116 | 100 | -> | Plus |
arm_X | 22416289..22416707 | 407..822 | 99 | | Plus |
BO12836.complete Sequence
832 bp assembled on 2006-10-11
GenBank Submission: FJ632597
> BO12836.complete
GAAGTTATCAGTCGACATGGCCTATGACTTGAAGAAGGAGTCAGACGTGA
AGGAGTACGTAGAAAAGCTGGGCGTGGAATATCGATTCGGGTGCTATTCC
GAGAAGAAGCCGGAAGCGTGCCACTTGCTGGGCGACTACTTGGAGGGCAT
CAAGAAAGACTTTGAAAAGGCCTCCAAGGTGTACAAGTCGACTTGCGACG
ACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTT
GGAAAAGGCAAGAGCGGTAGCAAGGGGAATCCACAAGTGGCCTACGAGTA
CTACGAGAAGGGCTGTAACTTAAACGACTCGGACGCCTGTCTTCACTCCG
GCCTGCTGCTCGTTTCAAAGTCCATGCCTAGGGAGATCGACTGGAATGTG
CCCAAGGGCCTGGAGTTTCTGACCAAAAGCTGCGACTTGAACAACGCCAC
TGCCTGCTTTTATCTCTCCGGGATGCACATCTCGGGCGTGCAAAAGAAGG
CGGATCAGAGTGCTGTCACTGCATCCTCCGGAAGTGGTACATCATCACCC
CCCGCCGGACAACCGCCTTTAAAGGACTCCGACTATATTGTTCTAAAAGA
CATGAAGAAGGCTTTCCAGTTTGCCCACAAGGCTTGCGAGCTTCGCAATA
TGTATGCGTGTGCCAATCTTAGCCAGATGTACGCCCGGGGCGATGGGATC
GAGAAGAACGAAAAGGAAGCGGAGAAGTACAAGAAGCTGGCCCTAGAAAT
GCAGGACGAGGTGAAGAAGCAGCATGATACGTTAGGGTTCCAGCAGGGCG
TGGGCATGCCTAATGCAAGCTTTCTAGACCAT
BO12836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 801 | CG13865-PC | 1..798 | 17..814 | 3990 | 100 | Plus |
CG13865-RA | 801 | CG13865-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG13865-RB | 441 | CG13865-PB | 1..391 | 17..407 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-RC | 2611 | CG13865-RC | 87..885 | 16..814 | 3995 | 100 | Plus |
CG13865-RA | 1194 | CG13865-RA | 87..885 | 16..814 | 3995 | 100 | Plus |
CG13865-RB | 635 | CG13865-RB | 87..478 | 16..407 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23014451..23014860 | 405..814 | 2050 | 100 | Plus |
X | 23542271 | X | 23013817..23014109 | 115..407 | 1465 | 100 | Plus |
X | 23542271 | X | 23013581..23013681 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:17 has no hits.
BO12836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:49 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:14 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 71..880 | 16..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:45 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 88..885 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:49 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 71..880 | 16..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:38 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13865-RA | 88..885 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:38 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23013582..23013681 | 17..116 | 100 | -> | Plus |
X | 23013819..23014108 | 117..406 | 100 | -> | Plus |
X | 23014453..23014860 | 407..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:45 Download gff for
BO12836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22415418..22415517 | 17..116 | 100 | -> | Plus |
arm_X | 22415655..22415944 | 117..406 | 100 | -> | Plus |
arm_X | 22416289..22416696 | 407..816 | 99 | | Plus |
BO12836.pep Sequence
Translation from 16 to 832
> BO12836.pep
MAYDLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFE
KASKVYKSTCDDYGYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGC
NLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYL
SGMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAF
QFAHKACELRNMYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDEVK
KQHDTLGFQQGVGMPNASFLDH
BO12836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13865-PC | 266 | CG13865-PC | 1..266 | 1..266 | 1424 | 100 | Plus |
CG13865-PA | 266 | CG13865-PA | 1..266 | 1..266 | 1424 | 100 | Plus |
CG13865-PB | 146 | CG13865-PB | 1..130 | 1..130 | 713 | 100 | Plus |