Clone BO12838 Report

Search the DGRC for BO12838

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG5096-RA
Protein status:BO12838.pep:
Sequenced Size:1507

Clone Sequence Records

BO12838.3prime Sequence

690 bp (689 high quality bases) assembled on 2006-05-08

> BO12838.3prime
ATGGTCTAGAAAGCTTGCAATATGGAAATCCTCGTTGAAACTAGTCCTAT
TATAGAGAGCACTGCTAGCACCGCTGTCATGACGTCTAAAGACGCCAAAG
CAGCCGCGCCTCTTCATCACGTAAGCACCAATGATGGTCGGCACCGCGAT
GAGCAGGACAACCAAGAGTCCAACCCATATAAGACTGCCCGTCGAACTTT
CTATCATATGTTCATTCGCCACTCTGAGCAGCGTAACATCGTTTAACTTG
TTCGGACCGCCACATTTGACATCTTTGGCCAGAACGGGCGTGGTCTTGTT
GATTCGATCTATCAAGACGTTGATCAAGAAGTCATTGGATTCGTCGCAAT
TCCACGGGTTGAATCTAAGATCCAGAGCCTTAAGTTTATCCCAGCGCACT
AGTAGTTCTTTCGGCAAAGTCGACACGTTGCAATTATTCAAGTAAACCTT
TTCCAATGGCGGGTAGTCCAAGTACTGGCCACCAGTTACGTTCTTGGATA
GAGCCTCCTCATCAATTTCATTTAGCAGTTTGTTGTCGGACAATATCAGT
TCAGTTAAACTTTGCAGTTCACTAAATGCTCCTGGCCCAATTTTGTACAA
CTTGGACATATAAAGTCATGCTGAGGTGGGTCAATTTGGTCAAAGGTGGA
AATACATTGTCGCCAATCAAATTTTCGATGGGATTTTCGT

BO12838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-PA 1476 CG5096-RA 882..1473 610..19 2960 100 Minus
CG5096-PA 1476 CG5096-RA 803..881 690..612 395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1649 CG5096-RA 880..1550 690..19 3335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10384194..10384624 449..19 2155 100 Minus
2L 23513712 2L 10384025..10384139 560..446 575 100 Minus
2L 23513712 2L 10383867..10383963 656..559 440 99 Minus
Blast to na_te.dros performed on 2015-02-10 21:05:10 has no hits.

BO12838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:19 Download gff for BO12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-PA 803..1476 15..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:05 Download gff for BO12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-PA 803..1476 15..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:50 Download gff for BO12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 880..1559 8..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:42 Download gff for BO12838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 880..1559 8..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:42 Download gff for BO12838.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10383768..10383801 657..690 100 -> Minus
2L 10383867..10383961 561..656 98 -> Minus
2L 10384025..10384137 448..560 100 -> Minus
2L 10384196..10384633 8..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:50 Download gff for BO12838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10383768..10383801 657..690 100 -> Minus
arm_2L 10383867..10383961 561..656 98 -> Minus
arm_2L 10384025..10384137 448..560 100 -> Minus
arm_2L 10384196..10384633 8..447 99   Minus

BO12838.5prime Sequence

780 bp (722 high quality bases) assembled on 2006-05-08

> BO12838.5prime
GAAGTTATCAGTCGACATGAATTTAACAAAATCAGCTACGTTAGCTGCTG
CGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAA
ACCACCACAACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAA
ATTGTGTAAGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCT
CCGAAAAACTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACC
AACGGCAATGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGAC
CAGCGTGCCAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTA
ACAACCAAATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAA
CTAGTCACACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGT
ACCGGATGTTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGG
AAAATCTAAAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGAT
GCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTC
AAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCT
TACAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTG
CCGGATACAATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGC
TGGCAATCTGTTTAATCAATTGCCAAACGC

BO12838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-PA 1476 CG5096-RA 1..761 17..777 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1649 CG5096-RA 78..838 17..777 3805 100 Plus
gny-RA 2557 CG5091-RA 2033..2141 17..125 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10383005..10383546 123..664 2710 100 Plus
2L 23513712 2L 10383605..10383726 656..777 580 98.4 Plus
2L 23513712 2L 10382340..10382448 17..125 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:15:29 has no hits.

BO12838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:20 Download gff for BO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:07 Download gff for BO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:59 Download gff for BO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 72..841 10..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:20 Download gff for BO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 72..841 10..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:20 Download gff for BO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10382334..10382447 10..124 96 -> Plus
2L 10383007..10383546 125..664 100 -> Plus
2L 10383614..10383729 665..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:59 Download gff for BO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10382334..10382447 10..124 96 -> Plus
arm_2L 10383007..10383546 125..664 100 -> Plus
arm_2L 10383614..10383729 665..780 99   Plus

BO12838.complete Sequence

1507 bp assembled on 2008-01-17

GenBank Submission: FJ638708

> BO12838.complete
GAAGTTATCAGTCGACATGAATTTAACAAAATCAGCTACGTTAGCTGCTG
CGATTTTTTGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAA
ACCACCACAACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAA
ATTGTGTAAGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCT
CCGAAAAACTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACC
AACGGCAATGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGAC
CAGCGTGCCAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTA
ACAACCAAATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAA
CTAGTCACACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGT
ACCGGATGTTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGG
AAAATCTAAAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGAT
GCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTC
AAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCT
TACAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTG
CCGGATACAATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGC
TGGCAATCTGTTTAATCAATTGCCAAAGGCCCTGAAATATGCGACGAACT
TGACCAGCCTGGTCTTAAACGAAAATCCCATCGAAAATTTGATTGGCGAC
AATGTATTTCCACCTTTGACCAAATTGACCCACCTCAGCATGACTTTTAT
GTCCAAGTTGTACAAAATTGGGCCAGGAGCATTTAGTGAACTGCAAAGTT
TAACTGAACTGATATTGTCCGACAACAAACTGCTAAATGAAATTGATGAG
GAGGCTCTATCCAAGAACGTAACTGGTGGCCAGTACTTGGACTACCCGCC
ATTGGAAAAGGTTTACTTGAATAATTGCAACGTGTCGACTTTGCCGAAAG
AACTACTAGTGCGCTGGGATAAACTTAAGGCTCTGGATCTTAGATTCAAC
CCGTGGAATTGCGACGAATCCAATGACTTCTTGATCAACGTCTTGATAGA
TCGAATCAACAAGACCACGCCCGTTCTGGCCAAAGATGTCAAATGTGGCG
GTCCGAACAAGTTAAACGATGTTACGCTGCTCAGAGTGGCGAATGAACAT
ATGATAGAAAGTTCGACGGGCAGTCTTATATGGGTTGGACTCTTGGTTGT
CCTGCTCATCGCGGTGCCGACCATCATTGGTGCTTACGTGATGAAGAGGC
GCGGCTGCTTTGGCGTCTTTAGACGTCATGACAGCGGTGCTAGCAGTGCT
CTCTATAATAGGACTAGTTTCAACGAGGATTTCCATATTGCAAGCTTTCT
AGACCAT

BO12838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1476 CG5096-PA 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-RA 1649 CG5096-RA 78..1550 17..1489 7365 100 Plus
gny-RA 2557 CG5091-RA 2033..2141 17..125 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10383005..10383546 123..664 2710 100 Plus
2L 23513712 2L 10384194..10384624 1059..1489 2155 100 Plus
2L 23513712 2L 10383605..10383801 656..852 955 99 Plus
2L 23513712 2L 10384025..10384139 948..1062 575 100 Plus
2L 23513712 2L 10382340..10382448 17..125 545 100 Plus
2L 23513712 2L 10383867..10383963 853..949 485 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:59:21 has no hits.

BO12838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:00 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 1..1476 17..1493 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:15 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 88..1560 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:36 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 78..1550 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:00 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 82..1569 10..1500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:51 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
CG5096-RA 78..1550 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:51 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10382340..10382447 17..124 100 -> Plus
2L 10383007..10383546 125..664 100 -> Plus
2L 10383614..10383801 665..852 100 -> Plus
2L 10383867..10383961 853..947 100 -> Plus
2L 10384025..10384137 948..1060 100 -> Plus
2L 10384196..10384624 1061..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:36 Download gff for BO12838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10382340..10382447 17..124 100 -> Plus
arm_2L 10383007..10383546 125..664 100 -> Plus
arm_2L 10383614..10383801 665..852 100 -> Plus
arm_2L 10383867..10383961 853..947 100 -> Plus
arm_2L 10384025..10384137 948..1060 100 -> Plus
arm_2L 10384196..10384624 1061..1491 99   Plus

BO12838.pep Sequence

Translation from 16 to 1507

> BO12838.pep
MNLTKSATLAAAIFCIVLSQVSGQTKDETTTTETPKEKIKVIDSKLCKKC
NCYIDTNLLDCSEKLQDWLSAEDWEDLTNGNVVFKTINLEHNNLTSVPIL
PKYDVENLYLANNQIDSISVGAFQNLTELVTLDLSHNRLTSKVLVPDVFK
GPFTVQDFESLENLKTLNLGYNDLHSLDADLFEHIPHIEELVLCSNSFHV
IDQLSETAISGLQSLKILDVSYMEIDDLPDTILHGPRDLEIFIAAGNLFN
QLPKALKYATNLTSLVLNENPIENLIGDNVFPPLTKLTHLSMTFMSKLYK
IGPGAFSELQSLTELILSDNKLLNEIDEEALSKNVTGGQYLDYPPLEKVY
LNNCNVSTLPKELLVRWDKLKALDLRFNPWNCDESNDFLINVLIDRINKT
TPVLAKDVKCGGPNKLNDVTLLRVANEHMIESSTGSLIWVGLLVVLLIAV
PTIIGAYVMKRRGCFGVFRRHDSGASSALYNRTSFNEDFHIASFLDH

BO12838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5096-PA 491 CG5096-PA 1..491 1..491 2539 100 Plus
caps-PB 540 CG11282-PB 83..502 38..489 255 26.8 Plus
caps-PA 540 CG11282-PA 83..502 38..489 255 26.8 Plus
CG7702-PB 537 CG7702-PB 34..385 44..382 254 25.4 Plus
CG7702-PA 537 CG7702-PA 34..385 44..382 254 25.4 Plus