Clone Sequence Records
BO12839.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO12839.3prime
ATGGTCTAGAAAGCTTGCGTCGTCGCTGGACTCGACATTCTCGGTCTGCA
AGTTCTTGAACGTGGACACCGGCACATAGGTCACGTAAGTGTACAGCTTG
TTGGGGGAGTCCTCATCGTCGTTGCGGCGACGCGCCAGGCGCACGCGAAT
GCGGAATGGAGTGGACCTGATACCCTTGGACCAGATGTGCTTGTTCAGAC
GGGTGTCGATCCTCACATCGGTGGTGCCCATCTCCCGCTCGGCGAACTTG
CGGATCTCCTTGATGGCGCGGGGTGCGCGCTTCTTGAAGCCGATGTTGTG
GACACGCTTGGCCAAGTGAATGGTGCACTCGCGCGTCACGACTTCGTTGA
TCGCGGATTTGTTGATTTTCTCACCCTTGGTCTTGGTCATGTCGACTGAT
AACT
BO12839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1821-PC | 375 | RpL31-RC | 1..372 | 390..19 | 1860 | 100 | Minus |
CG1821-PB | 375 | RpL31-RB | 1..372 | 390..19 | 1860 | 100 | Minus |
CG1821-PA | 375 | RpL31-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 509 | CG1821-RA | 73..444 | 390..19 | 1860 | 100 | Minus |
RpL31-RB | 577 | CG1821-RB | 141..512 | 390..19 | 1860 | 100 | Minus |
RpL31-RC | 522 | CG1821-RC | 86..457 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9587483..9587708 | 390..165 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 9587774..9587924 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:20:33 has no hits.
BO12839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:21 Download gff for
BO12839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:09 Download gff for
BO12839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1821-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:12 Download gff for
BO12839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 13..398 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:27 Download gff for
BO12839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 13..398 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:27 Download gff for
BO12839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9587476..9587706 | 167..398 | 98 | -> | Minus |
2R | 9587777..9587929 | 13..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:12 Download gff for
BO12839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5474981..5475211 | 167..398 | 98 | -> | Minus |
arm_2R | 5475282..5475434 | 13..166 | 98 | | Minus |
BO12839.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO12839.5prime
GAAGTTATCAGTCGACATGACCAAGACCAAGGGTGAGAAAATCAACAAAT
CCGCGATCAACGAAGTCGTGACGCGCGAGTGCACCATTCACTTGGCCAAG
CGTGTCCACAACATCGGCTTCAAGAAGCGCGCACCCCGCGCCATCAAGGA
GATCCGCAAGTTCGCCGAGCGGGAGATGGGCACCACCGATGTGAGGATCG
ACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTCCACTCCA
TTCCGCATTCGCGTGCGCCTGGCGCGTCGCCGCAACGACGATGAGGACTC
CCCCAACAAGCTGTACACTTACGTGACCTATGTGCCGGTGTCCACGTTCA
AGAACTTGCAGACCGAGAATGTCGAGTCCAGCGACGACGCAAGCTTTCTA
GACC
BO12839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1821-PC | 375 | RpL31-RC | 1..372 | 17..388 | 1860 | 100 | Plus |
CG1821-PB | 375 | RpL31-RB | 1..372 | 17..388 | 1860 | 100 | Plus |
CG1821-PA | 375 | RpL31-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 509 | CG1821-RA | 73..444 | 17..388 | 1860 | 100 | Plus |
RpL31-RB | 577 | CG1821-RB | 141..512 | 17..388 | 1860 | 100 | Plus |
RpL31-RC | 522 | CG1821-RC | 86..457 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9587483..9587708 | 17..242 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 9587774..9587924 | 238..388 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:41:03 has no hits.
BO12839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:22 Download gff for
BO12839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:10 Download gff for
BO12839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1821-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:13 Download gff for
BO12839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:24:57 Download gff for
BO12839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..394 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:57 Download gff for
BO12839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9587476..9587706 | 9..240 | 98 | -> | Plus |
2R | 9587777..9587929 | 241..394 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:13 Download gff for
BO12839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5474981..5475211 | 9..240 | 98 | -> | Plus |
arm_2R | 5475282..5475434 | 241..394 | 98 | | Plus |
BO12839.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632598
> BO12839.complete
GAAGTTATCAGTCGACATGACCAAGACCAAGGGTGAGAAAATCAACAAAT
CCGCGATCAACGAAGTCGTGACGCGCGAGTGCACCATTCACTTGGCCAAG
CGTGTCCACAACATCGGCTTCAAGAAGCGCGCACCCCGCGCCATCAAGGA
GATCCGCAAGTTCGCCGAGCGGGAGATGGGCACCACCGATGTGAGGATCG
ACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTCCACTCCA
TTCCGCATTCGCGTGCGCCTGGCGCGTCGCCGCAACGACGATGAGGACTC
CCCCAACAAGCTGTACACTTACGTGACCTATGTGCCGGTGTCCACGTTCA
AGAACTTGCAGACCGAGAATGTCGAGTCCAGCGACGACGCAAGCTTTCTA
GACCAT
BO12839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 375 | CG1821-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
RpL31-RB | 375 | CG1821-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
RpL31-RC | 375 | CG1821-PC | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 509 | CG1821-RA | 73..444 | 17..388 | 1860 | 100 | Plus |
RpL31-RB | 577 | CG1821-RB | 141..512 | 17..388 | 1860 | 100 | Plus |
RpL31-RC | 522 | CG1821-RC | 86..457 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9587483..9587708 | 17..242 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 9587774..9587924 | 238..388 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:26:31 has no hits.
BO12839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:58 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:01 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:11 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 86..457 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:58 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:11 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 86..457 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:11 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9587483..9587706 | 17..240 | 100 | -> | Plus |
2R | 9587777..9587924 | 241..390 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:11 Download gff for
BO12839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5474988..5475211 | 17..240 | 100 | -> | Plus |
arm_2R | 5475282..5475429 | 241..390 | 98 | | Plus |
BO12839.pep Sequence
Translation from 16 to 406
> BO12839.pep
MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFA
EREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLY
TYVTYVPVSTFKNLQTENVESSDDASFLDH
BO12839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-PA | 124 | CG1821-PA | 1..124 | 1..124 | 639 | 100 | Plus |
RpL31-PB | 124 | CG1821-PB | 1..124 | 1..124 | 639 | 100 | Plus |
RpL31-PC | 124 | CG1821-PC | 1..124 | 1..124 | 639 | 100 | Plus |