Clone BO12839 Report

Search the DGRC for BO12839

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptRpL31-RA
Protein status:BO12839.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO12839.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO12839.3prime
ATGGTCTAGAAAGCTTGCGTCGTCGCTGGACTCGACATTCTCGGTCTGCA
AGTTCTTGAACGTGGACACCGGCACATAGGTCACGTAAGTGTACAGCTTG
TTGGGGGAGTCCTCATCGTCGTTGCGGCGACGCGCCAGGCGCACGCGAAT
GCGGAATGGAGTGGACCTGATACCCTTGGACCAGATGTGCTTGTTCAGAC
GGGTGTCGATCCTCACATCGGTGGTGCCCATCTCCCGCTCGGCGAACTTG
CGGATCTCCTTGATGGCGCGGGGTGCGCGCTTCTTGAAGCCGATGTTGTG
GACACGCTTGGCCAAGTGAATGGTGCACTCGCGCGTCACGACTTCGTTGA
TCGCGGATTTGTTGATTTTCTCACCCTTGGTCTTGGTCATGTCGACTGAT
AACT

BO12839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1821-PC 375 RpL31-RC 1..372 390..19 1860 100 Minus
CG1821-PB 375 RpL31-RB 1..372 390..19 1860 100 Minus
CG1821-PA 375 RpL31-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL31-RA 509 CG1821-RA 73..444 390..19 1860 100 Minus
RpL31-RB 577 CG1821-RB 141..512 390..19 1860 100 Minus
RpL31-RC 522 CG1821-RC 86..457 390..19 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9587483..9587708 390..165 1130 100 Minus
2R 25286936 2R 9587774..9587924 169..19 755 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:20:33 has no hits.

BO12839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:21 Download gff for BO12839.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL31-PA 1..375 15..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:09 Download gff for BO12839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1821-PA 1..375 15..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:12 Download gff for BO12839.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 79..462 13..398 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:27 Download gff for BO12839.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 79..462 13..398 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:27 Download gff for BO12839.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9587476..9587706 167..398 98 -> Minus
2R 9587777..9587929 13..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:12 Download gff for BO12839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5474981..5475211 167..398 98 -> Minus
arm_2R 5475282..5475434 13..166 98   Minus

BO12839.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO12839.5prime
GAAGTTATCAGTCGACATGACCAAGACCAAGGGTGAGAAAATCAACAAAT
CCGCGATCAACGAAGTCGTGACGCGCGAGTGCACCATTCACTTGGCCAAG
CGTGTCCACAACATCGGCTTCAAGAAGCGCGCACCCCGCGCCATCAAGGA
GATCCGCAAGTTCGCCGAGCGGGAGATGGGCACCACCGATGTGAGGATCG
ACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTCCACTCCA
TTCCGCATTCGCGTGCGCCTGGCGCGTCGCCGCAACGACGATGAGGACTC
CCCCAACAAGCTGTACACTTACGTGACCTATGTGCCGGTGTCCACGTTCA
AGAACTTGCAGACCGAGAATGTCGAGTCCAGCGACGACGCAAGCTTTCTA
GACC

BO12839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1821-PC 375 RpL31-RC 1..372 17..388 1860 100 Plus
CG1821-PB 375 RpL31-RB 1..372 17..388 1860 100 Plus
CG1821-PA 375 RpL31-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpL31-RA 509 CG1821-RA 73..444 17..388 1860 100 Plus
RpL31-RB 577 CG1821-RB 141..512 17..388 1860 100 Plus
RpL31-RC 522 CG1821-RC 86..457 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9587483..9587708 17..242 1130 100 Plus
2R 25286936 2R 9587774..9587924 238..388 755 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:41:03 has no hits.

BO12839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:22 Download gff for BO12839.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL31-PA 1..375 17..392 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:10 Download gff for BO12839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1821-PA 1..375 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:13 Download gff for BO12839.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 79..462 9..394 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:24:57 Download gff for BO12839.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 79..462 9..394 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:57 Download gff for BO12839.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9587476..9587706 9..240 98 -> Plus
2R 9587777..9587929 241..394 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:13 Download gff for BO12839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5474981..5475211 9..240 98 -> Plus
arm_2R 5475282..5475434 241..394 98   Plus

BO12839.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ632598

> BO12839.complete
GAAGTTATCAGTCGACATGACCAAGACCAAGGGTGAGAAAATCAACAAAT
CCGCGATCAACGAAGTCGTGACGCGCGAGTGCACCATTCACTTGGCCAAG
CGTGTCCACAACATCGGCTTCAAGAAGCGCGCACCCCGCGCCATCAAGGA
GATCCGCAAGTTCGCCGAGCGGGAGATGGGCACCACCGATGTGAGGATCG
ACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTCCACTCCA
TTCCGCATTCGCGTGCGCCTGGCGCGTCGCCGCAACGACGATGAGGACTC
CCCCAACAAGCTGTACACTTACGTGACCTATGTGCCGGTGTCCACGTTCA
AGAACTTGCAGACCGAGAATGTCGAGTCCAGCGACGACGCAAGCTTTCTA
GACCAT

BO12839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpL31-RA 375 CG1821-PA 1..372 17..388 1860 100 Plus
RpL31-RB 375 CG1821-PB 1..372 17..388 1860 100 Plus
RpL31-RC 375 CG1821-PC 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpL31-RA 509 CG1821-RA 73..444 17..388 1860 100 Plus
RpL31-RB 577 CG1821-RB 141..512 17..388 1860 100 Plus
RpL31-RC 522 CG1821-RC 86..457 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9587483..9587708 17..242 1130 100 Plus
2R 25286936 2R 9587774..9587924 238..388 755 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:26:31 has no hits.

BO12839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:58 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
RpL31-RA 1..375 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:01 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 79..462 9..394 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:11 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 86..457 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:58 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 79..462 9..394 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:11 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
RpL31-RC 86..457 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:11 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9587483..9587706 17..240 100 -> Plus
2R 9587777..9587924 241..390 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:11 Download gff for BO12839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5474988..5475211 17..240 100 -> Plus
arm_2R 5475282..5475429 241..390 98   Plus

BO12839.pep Sequence

Translation from 16 to 406

> BO12839.pep
MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFA
EREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLY
TYVTYVPVSTFKNLQTENVESSDDASFLDH

BO12839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL31-PA 124 CG1821-PA 1..124 1..124 639 100 Plus
RpL31-PB 124 CG1821-PB 1..124 1..124 639 100 Plus
RpL31-PC 124 CG1821-PC 1..124 1..124 639 100 Plus