Clone BO12840 Report

Search the DGRC for BO12840

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG3819-RA
Protein status:BO12840.pep: validated full length
Sequenced Size:1303

Clone Sequence Records

BO12840.3prime Sequence

838 bp (713 high quality bases) assembled on 2006-05-08

> BO12840.3prime
ATGGTCTAGAAAGCTTGCGACCAACAGTCCGCTGACGGAGAACTCGGGCA
GATGCGTCACCTTCTTGCGGAACTCCGGAACCTCGCAGGCGTAGGAGTAA
CCGGCGGTGATGTCCGTCTTCTTCCAGCTGATCCAGTTGATCCTGTCGCT
GACGTCCGTGCACAGGATGTAGTCCCGCTTGATCTCCTCCAAACTCAAAT
GGGGATTGTTGACGCCGATCAGAACGATGCCCTTCTTGGTGGATGGTTCG
ATTACCACTCGGAAGTATAGCTTGGGAACTGGAATCAGACCGTTGCCGTT
GTTATCGTGGGACAAATAGAGTTGCCTCTGTTCCCCATTCTTGTTGGGCA
GCGTGGTAACACCCCAGACTCCCGTCCAGCACTCCACGTGCTTGTTCTCC
TTGGCCACCCAGGCACGAACTCCGTCCTCCACGCGAGCCCAGTTACCAGC
ATTGAAGGTCTGCCACTGAGGAGCAGCGTTGATGAACAGGAAGGTGGCCC
TCTGCTCCGGGGCAAATACGAAGTCAGCCTTGGCACCCATGTGACCACGG
GCCAGGAAGATGTTCTTGGCCGAGTCAAAGAAACGGGATGAATCCATGTC
CAGCTCCTTGTCGATGGTCTCCTTCTGAACAGCCTGCGTGTATAGCTTGT
CCACATTCTTACCCGCGAAATAGCCGCCGGCTCCAAATGTAATGCGATCC
ACTCCGGTGGCATAGTAGTTGTTTCCCGGTTCCAGGCGATGATAGACGTA
CCTGGTCACCTCCTCGTCCTCGTTGAAGCATACCTCGTACTGCGTTGCGA
ATCGTGAGCCGGAGAGCTCAAAGCCCACCTTGATCAGC

BO12840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PA 1272 CG3819-RA 450..1269 838..19 4100 100 Minus
CG6839-PA 1293 CG6839-RA 799..881 507..425 240 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1422 CG3819-RB 466..1285 838..19 4100 100 Minus
CG3819-RA 1328 CG3819-RA 466..1285 838..19 4100 100 Minus
CG6839-RA 1325 CG6839-RA 746..1261 560..45 715 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18920567..18921386 19..838 4100 100 Plus
3L 28110227 3L 18918680..18919195 560..45 690 75.6 Minus
Blast to na_te.dros performed on 2015-02-12 12:43:06 has no hits.

BO12840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:23 Download gff for BO12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-PA 450..1272 15..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:11 Download gff for BO12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-PA 450..1272 15..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:21 Download gff for BO12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 466..1291 12..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:46 Download gff for BO12840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 466..1291 12..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:46 Download gff for BO12840.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18920560..18921386 14..838 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:21 Download gff for BO12840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18913660..18914486 14..838 99   Plus

BO12840.5prime Sequence

897 bp (734 high quality bases) assembled on 2006-05-08

> BO12840.5prime
GAAGTTATCAGTCGACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCC
TCTTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCC
TGGGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGC
AGCTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGC
CTCTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACC
GGCTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAG
CAGCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGG
GTGGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATC
AAGTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTG
CAATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCAC
GATTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACC
AGGTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGG
AGTGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATG
TGGACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAG
CTGGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCT
GGCCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGC
AGAGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTC
AATGCTGGGTACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGT

BO12840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PA 1272 CG3819-RA 1..881 17..897 4355 99.7 Plus
CG6839-PA 1293 CG6839-RA 799..881 797..879 215 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1422 CG3819-RB 15..897 15..897 4385 99.8 Plus
CG3819-RA 1328 CG3819-RA 15..897 15..897 4385 99.8 Plus
CG6839-RA 1325 CG6839-RA 746..881 744..879 410 86.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18920955..18921701 897..151 3705 99.7 Minus
3L 28110227 3L 18921957..18922094 152..15 690 100 Minus
3L 28110227 3L 18918680..18918815 744..879 410 86.8 Plus
Blast to na_te.dros performed on 2015-02-13 08:04:41 has no hits.

BO12840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:24 Download gff for BO12840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:13 Download gff for BO12840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:12 Download gff for BO12840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 3..897 7..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:56 Download gff for BO12840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 3..897 7..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:56 Download gff for BO12840.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18920955..18921699 153..897 99 <- Minus
3L 18921957..18922106 7..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:12 Download gff for BO12840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18914055..18914799 153..897 99 <- Minus
arm_3L 18915057..18915206 7..152 97   Minus

BO12840.complete Sequence

1303 bp assembled on 2006-10-11

GenBank Submission: FJ632599

> BO12840.complete
GAAGTTATCAGTCGACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCC
TCTTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCC
TGGGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGC
AGCTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGC
CTCTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACC
GGCTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAG
CAGCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGG
GTGGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATC
AAGTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTG
CAATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCAC
GATTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACC
AGGTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGG
AGTGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATG
TGGACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAG
CTGGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCT
GGCCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGC
AGAGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTC
AATGCTGGTAACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGTGGC
CAAGGAGAACAAGCACGTGGAGTGCTGGACGGGAGTCTGGGGTGTTACCA
CGCTGCCCAACAAGAATGGGGAACAGAGGCAACTCTATTTGTCCCACGAT
AACAACGGCAACGGTCTGATTCCAGTTCCCAAGCTATACTTCCGAGTGGT
AATCGAACCATCCACCAAGAAGGGCATCGTTCTGATCGGCGTCAACAATC
CCCATTTGAGTTTGGAGGAGATCAAGCGGGACTACATCCTGTGCACGGAC
GTCAGCGACAGGATCAACTGGATCAGCTGGAAGAAGACGGACATCACCGC
CGGTTACTCCTACGCCTGCGAGGTTCCGGAGTTCCGCAAGAAGGTGACGC
ATCTGCCCGAGTTCTCCGTCAGCGGACTGTTGGTCGCAAGCTTTCTAGAC
CAT

BO12840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1272 CG3819-PB 1..1269 17..1285 6345 100 Plus
CG3819-RA 1272 CG3819-PA 1..1269 17..1285 6345 100 Plus
CG6839-RA 1293 CG6839-PA 746..1261 744..1259 690 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-RB 1422 CG3819-RB 15..1285 15..1285 6355 100 Plus
CG3819-RA 1328 CG3819-RA 15..1285 15..1285 6355 100 Plus
CG6839-RA 1325 CG6839-RA 746..1261 744..1259 690 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18920567..18921701 1285..151 5675 100 Minus
3L 28110227 3L 18918680..18919195 744..1259 690 75.6 Plus
3L 28110227 3L 18921957..18922094 152..15 690 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:00:09 has no hits.

BO12840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:50 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1272 17..1289 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:45 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 15..1283 17..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:26 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 17..1285 17..1287 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:50 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 1..1289 7..1292 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:47 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
CG3819-RA 17..1285 17..1287 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:47 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18920565..18921699 153..1287 99 <- Minus
3L 18921957..18922092 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:26 Download gff for BO12840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18913665..18914799 153..1287 99 <- Minus
arm_3L 18915057..18915192 17..152 100   Minus

BO12840.pep Sequence

Translation from 16 to 1303

> BO12840.pep
MKCLVLIAFSGLFLASAQARILPAEDLPWELPEVPVAVNEIEPRAAGCSI
KIRSSELKDPQPLLIKSDTSEIVGFSDTGYVDVDKDKTIEFHCTSSLASP
LSGKSVTAKCVGGTTFKIDDKEHDLSAIKCTSWPVFVGKKSGSSCNGGTT
LIKVGFELSGSRFATQYEVCFNEDEEVTRYVYHRLEPGNNYYATGVDRIT
FGAGGYFAGKNVDKLYTQAVQKETIDKELDMDSSRFFDSAKNIFLARGHM
GAKADFVFAPEQRATFLFINAAPQWQTFNAGNWARVEDGVRAWVAKENKH
VECWTGVWGVTTLPNKNGEQRQLYLSHDNNGNGLIPVPKLYFRVVIEPST
KKGIVLIGVNNPHLSLEEIKRDYILCTDVSDRINWISWKKTDITAGYSYA
CEVPEFRKKVTHLPEFSVSGLLVASFLDH

BO12840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3819-PB 423 CG3819-PB 1..423 1..423 2242 100 Plus
CG3819-PA 423 CG3819-PA 1..423 1..423 2242 100 Plus
CG6839-PA 430 CG6839-PA 1..429 1..423 1227 54.8 Plus
CG14120-PA 1371 CG14120-PA 987..1369 48..422 950 47.1 Plus
CG14120-PA 1371 CG14120-PA 5..424 2..422 888 42.1 Plus
CG14120-PA 1371 CG14120-PA 593..975 38..422 737 35.8 Plus
CG14118-PA 439 CG14118-PA 1..428 5..414 560 29.5 Plus