Clone Sequence Records
BO12840.3prime Sequence
838 bp (713 high quality bases) assembled on 2006-05-08
> BO12840.3prime
ATGGTCTAGAAAGCTTGCGACCAACAGTCCGCTGACGGAGAACTCGGGCA
GATGCGTCACCTTCTTGCGGAACTCCGGAACCTCGCAGGCGTAGGAGTAA
CCGGCGGTGATGTCCGTCTTCTTCCAGCTGATCCAGTTGATCCTGTCGCT
GACGTCCGTGCACAGGATGTAGTCCCGCTTGATCTCCTCCAAACTCAAAT
GGGGATTGTTGACGCCGATCAGAACGATGCCCTTCTTGGTGGATGGTTCG
ATTACCACTCGGAAGTATAGCTTGGGAACTGGAATCAGACCGTTGCCGTT
GTTATCGTGGGACAAATAGAGTTGCCTCTGTTCCCCATTCTTGTTGGGCA
GCGTGGTAACACCCCAGACTCCCGTCCAGCACTCCACGTGCTTGTTCTCC
TTGGCCACCCAGGCACGAACTCCGTCCTCCACGCGAGCCCAGTTACCAGC
ATTGAAGGTCTGCCACTGAGGAGCAGCGTTGATGAACAGGAAGGTGGCCC
TCTGCTCCGGGGCAAATACGAAGTCAGCCTTGGCACCCATGTGACCACGG
GCCAGGAAGATGTTCTTGGCCGAGTCAAAGAAACGGGATGAATCCATGTC
CAGCTCCTTGTCGATGGTCTCCTTCTGAACAGCCTGCGTGTATAGCTTGT
CCACATTCTTACCCGCGAAATAGCCGCCGGCTCCAAATGTAATGCGATCC
ACTCCGGTGGCATAGTAGTTGTTTCCCGGTTCCAGGCGATGATAGACGTA
CCTGGTCACCTCCTCGTCCTCGTTGAAGCATACCTCGTACTGCGTTGCGA
ATCGTGAGCCGGAGAGCTCAAAGCCCACCTTGATCAGC
BO12840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-PA | 1272 | CG3819-RA | 450..1269 | 838..19 | 4100 | 100 | Minus |
CG6839-PA | 1293 | CG6839-RA | 799..881 | 507..425 | 240 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1422 | CG3819-RB | 466..1285 | 838..19 | 4100 | 100 | Minus |
CG3819-RA | 1328 | CG3819-RA | 466..1285 | 838..19 | 4100 | 100 | Minus |
CG6839-RA | 1325 | CG6839-RA | 746..1261 | 560..45 | 715 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18920567..18921386 | 19..838 | 4100 | 100 | Plus |
3L | 28110227 | 3L | 18918680..18919195 | 560..45 | 690 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:43:06 has no hits.
BO12840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:23 Download gff for
BO12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-PA | 450..1272 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:11 Download gff for
BO12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-PA | 450..1272 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:21 Download gff for
BO12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 466..1291 | 12..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:46 Download gff for
BO12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 466..1291 | 12..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:46 Download gff for
BO12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18920560..18921386 | 14..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:21 Download gff for
BO12840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18913660..18914486 | 14..838 | 99 | | Plus |
BO12840.5prime Sequence
897 bp (734 high quality bases) assembled on 2006-05-08
> BO12840.5prime
GAAGTTATCAGTCGACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCC
TCTTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCC
TGGGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGC
AGCTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGC
CTCTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACC
GGCTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAG
CAGCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGG
GTGGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATC
AAGTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTG
CAATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCAC
GATTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACC
AGGTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGG
AGTGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATG
TGGACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAG
CTGGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCT
GGCCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGC
AGAGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTC
AATGCTGGGTACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGT
BO12840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-PA | 1272 | CG3819-RA | 1..881 | 17..897 | 4355 | 99.7 | Plus |
CG6839-PA | 1293 | CG6839-RA | 799..881 | 797..879 | 215 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1422 | CG3819-RB | 15..897 | 15..897 | 4385 | 99.8 | Plus |
CG3819-RA | 1328 | CG3819-RA | 15..897 | 15..897 | 4385 | 99.8 | Plus |
CG6839-RA | 1325 | CG6839-RA | 746..881 | 744..879 | 410 | 86.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18920955..18921701 | 897..151 | 3705 | 99.7 | Minus |
3L | 28110227 | 3L | 18921957..18922094 | 152..15 | 690 | 100 | Minus |
3L | 28110227 | 3L | 18918680..18918815 | 744..879 | 410 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:04:41 has no hits.
BO12840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:24 Download gff for
BO12840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:13 Download gff for
BO12840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:12 Download gff for
BO12840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 3..897 | 7..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:56 Download gff for
BO12840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 3..897 | 7..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:56 Download gff for
BO12840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18920955..18921699 | 153..897 | 99 | <- | Minus |
3L | 18921957..18922106 | 7..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:12 Download gff for
BO12840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18914055..18914799 | 153..897 | 99 | <- | Minus |
arm_3L | 18915057..18915206 | 7..152 | 97 | | Minus |
BO12840.complete Sequence
1303 bp assembled on 2006-10-11
GenBank Submission: FJ632599
> BO12840.complete
GAAGTTATCAGTCGACATGAAGTGCCTAGTGTTGATTGCCTTCAGTGGCC
TCTTCTTGGCCAGTGCCCAGGCCCGAATCCTTCCCGCGGAGGATCTCCCC
TGGGAGTTGCCAGAAGTTCCGGTAGCGGTCAACGAGATTGAACCCAGAGC
AGCTGGTTGTTCAATTAAGATCCGCAGCTCTGAGCTGAAGGATCCCCAGC
CTCTGCTGATTAAATCGGACACCTCTGAAATCGTTGGATTCTCGGACACC
GGCTATGTGGACGTGGACAAGGACAAGACCATCGAATTCCACTGCACCAG
CAGCCTGGCTTCCCCTCTGTCTGGAAAATCCGTGACCGCCAAGTGCGTGG
GTGGCACCACCTTCAAGATTGACGATAAGGAGCACGATCTGTCCGCCATC
AAGTGCACATCGTGGCCAGTTTTTGTGGGCAAGAAGTCCGGATCCAGCTG
CAATGGTGGCACCACGCTGATCAAGGTGGGCTTTGAGCTCTCCGGCTCAC
GATTCGCAACGCAGTACGAGGTATGCTTCAACGAGGACGAGGAGGTGACC
AGGTACGTCTATCATCGCCTGGAACCGGGAAACAACTACTATGCCACCGG
AGTGGATCGCATTACATTTGGAGCCGGCGGCTATTTCGCGGGTAAGAATG
TGGACAAGCTATACACGCAGGCTGTTCAGAAGGAGACCATCGACAAGGAG
CTGGACATGGATTCATCCCGTTTCTTTGACTCGGCCAAGAACATCTTCCT
GGCCCGTGGTCACATGGGTGCCAAGGCTGACTTCGTATTTGCCCCGGAGC
AGAGGGCCACCTTCCTGTTCATCAACGCTGCTCCTCAGTGGCAGACCTTC
AATGCTGGTAACTGGGCTCGCGTGGAGGACGGAGTTCGTGCCTGGGTGGC
CAAGGAGAACAAGCACGTGGAGTGCTGGACGGGAGTCTGGGGTGTTACCA
CGCTGCCCAACAAGAATGGGGAACAGAGGCAACTCTATTTGTCCCACGAT
AACAACGGCAACGGTCTGATTCCAGTTCCCAAGCTATACTTCCGAGTGGT
AATCGAACCATCCACCAAGAAGGGCATCGTTCTGATCGGCGTCAACAATC
CCCATTTGAGTTTGGAGGAGATCAAGCGGGACTACATCCTGTGCACGGAC
GTCAGCGACAGGATCAACTGGATCAGCTGGAAGAAGACGGACATCACCGC
CGGTTACTCCTACGCCTGCGAGGTTCCGGAGTTCCGCAAGAAGGTGACGC
ATCTGCCCGAGTTCTCCGTCAGCGGACTGTTGGTCGCAAGCTTTCTAGAC
CAT
BO12840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1272 | CG3819-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
CG3819-RA | 1272 | CG3819-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
CG6839-RA | 1293 | CG6839-PA | 746..1261 | 744..1259 | 690 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-RB | 1422 | CG3819-RB | 15..1285 | 15..1285 | 6355 | 100 | Plus |
CG3819-RA | 1328 | CG3819-RA | 15..1285 | 15..1285 | 6355 | 100 | Plus |
CG6839-RA | 1325 | CG6839-RA | 746..1261 | 744..1259 | 690 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18920567..18921701 | 1285..151 | 5675 | 100 | Minus |
3L | 28110227 | 3L | 18918680..18919195 | 744..1259 | 690 | 75.6 | Plus |
3L | 28110227 | 3L | 18921957..18922094 | 152..15 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:00:09 has no hits.
BO12840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:50 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 1..1272 | 17..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:45 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 15..1283 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:26 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 17..1285 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:50 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 1..1289 | 7..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:47 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3819-RA | 17..1285 | 17..1287 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:47 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18920565..18921699 | 153..1287 | 99 | <- | Minus |
3L | 18921957..18922092 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:26 Download gff for
BO12840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18913665..18914799 | 153..1287 | 99 | <- | Minus |
arm_3L | 18915057..18915192 | 17..152 | 100 | | Minus |
BO12840.pep Sequence
Translation from 16 to 1303
> BO12840.pep
MKCLVLIAFSGLFLASAQARILPAEDLPWELPEVPVAVNEIEPRAAGCSI
KIRSSELKDPQPLLIKSDTSEIVGFSDTGYVDVDKDKTIEFHCTSSLASP
LSGKSVTAKCVGGTTFKIDDKEHDLSAIKCTSWPVFVGKKSGSSCNGGTT
LIKVGFELSGSRFATQYEVCFNEDEEVTRYVYHRLEPGNNYYATGVDRIT
FGAGGYFAGKNVDKLYTQAVQKETIDKELDMDSSRFFDSAKNIFLARGHM
GAKADFVFAPEQRATFLFINAAPQWQTFNAGNWARVEDGVRAWVAKENKH
VECWTGVWGVTTLPNKNGEQRQLYLSHDNNGNGLIPVPKLYFRVVIEPST
KKGIVLIGVNNPHLSLEEIKRDYILCTDVSDRINWISWKKTDITAGYSYA
CEVPEFRKKVTHLPEFSVSGLLVASFLDH
BO12840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3819-PB | 423 | CG3819-PB | 1..423 | 1..423 | 2242 | 100 | Plus |
CG3819-PA | 423 | CG3819-PA | 1..423 | 1..423 | 2242 | 100 | Plus |
CG6839-PA | 430 | CG6839-PA | 1..429 | 1..423 | 1227 | 54.8 | Plus |
CG14120-PA | 1371 | CG14120-PA | 987..1369 | 48..422 | 950 | 47.1 | Plus |
CG14120-PA | 1371 | CG14120-PA | 5..424 | 2..422 | 888 | 42.1 | Plus |
CG14120-PA | 1371 | CG14120-PA | 593..975 | 38..422 | 737 | 35.8 | Plus |
CG14118-PA | 439 | CG14118-PA | 1..428 | 5..414 | 560 | 29.5 | Plus |