Clone BO12841 Report

Search the DGRC for BO12841

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG31249-RA
Protein status:BO12841.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO12841.3prime Sequence

782 bp (684 high quality bases) assembled on 2006-05-08

> BO12841.3prime
ATGGTCTAGAAAGCTTGCGAATCCCACTTTCCCCAGCTTGGTATCAGTCT
TTGGATTGGCCGTGATGTTCTGCACCGCCACAATGGTCTCATTGATGTGT
GTCTGCAGCTCGCGTAGGCTCTGGATCTGGAGAAGACGTAGTATGCGCAT
GGGCAGGTCCAGGGCAGAGTCGTTGGACGAGACGACGTCGTTTCCCTTGT
CAAAAGGGAAGGGTTTACCCACTACCGGCTTGCGATCCTTGGCGGCGGGC
GAGAGGCGTTCGTGCACCACGCGAGCGATAGCCTCCAGCTGCAACAGATG
GTTCGGGTGGTGCGGCACATTCAGTTTGCTGGCCAGCAGCCGGACTCCAT
CCACGAACGCTTTTTCCTGAGTATTAATATTTCCATCGAAAATAGCCTGG
ACCCTTTGTTGGGACTGCTTGCCATTGCTTTGGGGTGGCACCTGTTTGGT
GTTAATCGAGGCAAACTGATCAGGATCATCGAGGAAGTCCAGGCGCACAG
CATAGCTGACAATCCAGGCCAGCTGCTCCTGCCGCGTCTCCAGGGGCGGC
ATGCTCAAATCGGCACAGTACTTTAAGTAACCCTCCTTCCAGATCTCAGG
GTTGTCGACAGTGCGCAGCTTACAGCGATCCTCTATGGAGTAAAGCCGGA
TCTTCTGGTCCTCCAACCAGAGGACTGTGTTGGCGAATTCCTTGCGGTCG
CTCATCACCACCGGGATGTCAACATCGGGACAACCCAGTACCTCGAGTTT
CATCTTGAGCGACAGCATGTCCACTGATAACT

BO12841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-PA 753 CG31249-RA 1..750 768..19 3725 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 1176 CG31249-RA 106..856 769..19 3740 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17686009..17686361 19..371 1765 100 Plus
3R 32079331 3R 17686511..17686838 372..699 1640 100 Plus
3R 32079331 3R 17686896..17686966 699..769 340 98.6 Plus
Blast to na_te.dros performed on 2015-02-11 16:45:00 has no hits.

BO12841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:25 Download gff for BO12841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-PA 1..753 18..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:14 Download gff for BO12841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-PA 1..753 18..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:47 Download gff for BO12841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 106..856 19..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:16 Download gff for BO12841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 106..856 19..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:16 Download gff for BO12841.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17686009..17686361 19..371 100 <- Plus
3R 17686511..17686837 372..698 100 <- Plus
3R 17686896..17686966 699..769 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:47 Download gff for BO12841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13511731..13512083 19..371 100 <- Plus
arm_3R 13512233..13512559 372..698 100 <- Plus
arm_3R 13512618..13512688 699..769 98 <- Plus

BO12841.5prime Sequence

782 bp (780 high quality bases) assembled on 2006-05-08

> BO12841.5prime
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAGAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGT
CGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTC
TTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACC
ATTGTGGCGGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCT
GGGGAAAGTGGGATTCGCAAGCTTTCTAGACC

BO12841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-PA 753 CG31249-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 1176 CG31249-RA 106..856 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17686009..17686361 766..414 1765 100 Minus
3R 32079331 3R 17686511..17686838 413..86 1640 100 Minus
3R 32079331 3R 17686896..17686966 86..16 355 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:23:48 has no hits.

BO12841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:27 Download gff for BO12841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-PA 1..753 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:15 Download gff for BO12841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-PA 1..753 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:24 Download gff for BO12841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 106..856 16..766 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:05:58 Download gff for BO12841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 106..856 16..766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:05:58 Download gff for BO12841.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17686009..17686361 414..766 100 <- Minus
3R 17686511..17686837 87..413 100 <- Minus
3R 17686896..17686966 16..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:24 Download gff for BO12841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13511731..13512083 414..766 100 <- Minus
arm_3R 13512233..13512559 87..413 100 <- Minus
arm_3R 13512618..13512688 16..86 100   Minus

BO12841.complete Sequence

784 bp assembled on 2006-10-11

GenBank Submission: FJ632600

> BO12841.complete
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAGAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGT
CGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTC
TTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACC
ATTGTGGCGGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCT
GGGGAAAGTGGGATTCGCAAGCTTTCTAGACCAT

BO12841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 753 CG31249-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 1176 CG31249-RA 106..856 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17686009..17686361 766..414 1765 100 Minus
3R 32079331 3R 17686511..17686838 413..86 1640 100 Minus
3R 32079331 3R 17686896..17686966 86..16 355 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:13:16 has no hits.

BO12841.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:51 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 1..753 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:17 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 96..846 16..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:48 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 107..856 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:51 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 96..846 16..766 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:55 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 107..856 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:55 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17686007..17686361 414..768 99 <- Minus
3R 17686511..17686837 87..413 100 <- Minus
3R 17686896..17686965 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:48 Download gff for BO12841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13511729..13512083 414..768 99 <- Minus
arm_3R 13512233..13512559 87..413 100 <- Minus
arm_3R 13512618..13512687 17..86 100   Minus

BO12841.pep Sequence

Translation from 16 to 784

> BO12841.pep
MLSLKMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCK
LRTVDNPEIWKEGYLKYCADLSMPPLETRQEQLAWIVSYAVRLDFLDDPD
QFASINTKQVPPQSNGKQSQQRVQAIFDGNINTQEKAFVDGVRLLASKLN
VPHHPNHLLQLEAIARVVHERLSPAAKDRKPVVGKPFPFDKGNDVVSSND
SALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDTKLGKVGF
ASFLDH

BO12841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-PA 250 CG31249-PA 1..250 1..250 1286 100 Plus