Clone Sequence Records
BO12841.3prime Sequence
782 bp (684 high quality bases) assembled on 2006-05-08
> BO12841.3prime
ATGGTCTAGAAAGCTTGCGAATCCCACTTTCCCCAGCTTGGTATCAGTCT
TTGGATTGGCCGTGATGTTCTGCACCGCCACAATGGTCTCATTGATGTGT
GTCTGCAGCTCGCGTAGGCTCTGGATCTGGAGAAGACGTAGTATGCGCAT
GGGCAGGTCCAGGGCAGAGTCGTTGGACGAGACGACGTCGTTTCCCTTGT
CAAAAGGGAAGGGTTTACCCACTACCGGCTTGCGATCCTTGGCGGCGGGC
GAGAGGCGTTCGTGCACCACGCGAGCGATAGCCTCCAGCTGCAACAGATG
GTTCGGGTGGTGCGGCACATTCAGTTTGCTGGCCAGCAGCCGGACTCCAT
CCACGAACGCTTTTTCCTGAGTATTAATATTTCCATCGAAAATAGCCTGG
ACCCTTTGTTGGGACTGCTTGCCATTGCTTTGGGGTGGCACCTGTTTGGT
GTTAATCGAGGCAAACTGATCAGGATCATCGAGGAAGTCCAGGCGCACAG
CATAGCTGACAATCCAGGCCAGCTGCTCCTGCCGCGTCTCCAGGGGCGGC
ATGCTCAAATCGGCACAGTACTTTAAGTAACCCTCCTTCCAGATCTCAGG
GTTGTCGACAGTGCGCAGCTTACAGCGATCCTCTATGGAGTAAAGCCGGA
TCTTCTGGTCCTCCAACCAGAGGACTGTGTTGGCGAATTCCTTGCGGTCG
CTCATCACCACCGGGATGTCAACATCGGGACAACCCAGTACCTCGAGTTT
CATCTTGAGCGACAGCATGTCCACTGATAACT
BO12841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-PA | 753 | CG31249-RA | 1..750 | 768..19 | 3725 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 1176 | CG31249-RA | 106..856 | 769..19 | 3740 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17686009..17686361 | 19..371 | 1765 | 100 | Plus |
3R | 32079331 | 3R | 17686511..17686838 | 372..699 | 1640 | 100 | Plus |
3R | 32079331 | 3R | 17686896..17686966 | 699..769 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:45:00 has no hits.
BO12841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:25 Download gff for
BO12841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-PA | 1..753 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:14 Download gff for
BO12841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-PA | 1..753 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:47 Download gff for
BO12841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 106..856 | 19..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:16 Download gff for
BO12841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 106..856 | 19..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:16 Download gff for
BO12841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17686009..17686361 | 19..371 | 100 | <- | Plus |
3R | 17686511..17686837 | 372..698 | 100 | <- | Plus |
3R | 17686896..17686966 | 699..769 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:47 Download gff for
BO12841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13511731..13512083 | 19..371 | 100 | <- | Plus |
arm_3R | 13512233..13512559 | 372..698 | 100 | <- | Plus |
arm_3R | 13512618..13512688 | 699..769 | 98 | <- | Plus |
BO12841.5prime Sequence
782 bp (780 high quality bases) assembled on 2006-05-08
> BO12841.5prime
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAGAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGT
CGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTC
TTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACC
ATTGTGGCGGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCT
GGGGAAAGTGGGATTCGCAAGCTTTCTAGACC
BO12841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-PA | 753 | CG31249-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 1176 | CG31249-RA | 106..856 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17686009..17686361 | 766..414 | 1765 | 100 | Minus |
3R | 32079331 | 3R | 17686511..17686838 | 413..86 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 17686896..17686966 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:23:48 has no hits.
BO12841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:27 Download gff for
BO12841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-PA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:15 Download gff for
BO12841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-PA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:24 Download gff for
BO12841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 106..856 | 16..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:05:58 Download gff for
BO12841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 106..856 | 16..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:05:58 Download gff for
BO12841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17686009..17686361 | 414..766 | 100 | <- | Minus |
3R | 17686511..17686837 | 87..413 | 100 | <- | Minus |
3R | 17686896..17686966 | 16..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:24 Download gff for
BO12841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13511731..13512083 | 414..766 | 100 | <- | Minus |
arm_3R | 13512233..13512559 | 87..413 | 100 | <- | Minus |
arm_3R | 13512618..13512688 | 16..86 | 100 | | Minus |
BO12841.complete Sequence
784 bp assembled on 2006-10-11
GenBank Submission: FJ632600
> BO12841.complete
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAGAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGT
CGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTC
TTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACC
ATTGTGGCGGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCT
GGGGAAAGTGGGATTCGCAAGCTTTCTAGACCAT
BO12841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 753 | CG31249-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 1176 | CG31249-RA | 106..856 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17686009..17686361 | 766..414 | 1765 | 100 | Minus |
3R | 32079331 | 3R | 17686511..17686838 | 413..86 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 17686896..17686966 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:13:16 has no hits.
BO12841.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:51 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:17 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 96..846 | 16..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:48 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 107..856 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:51 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 96..846 | 16..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:55 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 107..856 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:55 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17686007..17686361 | 414..768 | 99 | <- | Minus |
3R | 17686511..17686837 | 87..413 | 100 | <- | Minus |
3R | 17686896..17686965 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:48 Download gff for
BO12841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13511729..13512083 | 414..768 | 99 | <- | Minus |
arm_3R | 13512233..13512559 | 87..413 | 100 | <- | Minus |
arm_3R | 13512618..13512687 | 17..86 | 100 | | Minus |
BO12841.pep Sequence
Translation from 16 to 784
> BO12841.pep
MLSLKMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCK
LRTVDNPEIWKEGYLKYCADLSMPPLETRQEQLAWIVSYAVRLDFLDDPD
QFASINTKQVPPQSNGKQSQQRVQAIFDGNINTQEKAFVDGVRLLASKLN
VPHHPNHLLQLEAIARVVHERLSPAAKDRKPVVGKPFPFDKGNDVVSSND
SALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDTKLGKVGF
ASFLDH
BO12841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-PA | 250 | CG31249-PA | 1..250 | 1..250 | 1286 | 100 | Plus |