Clone BO12846 Report

Search the DGRC for BO12846

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptbves-RA
Protein status:BO12846.pep: validated full length
Sequenced Size:1276

Clone Sequence Records

BO12846.3prime Sequence

787 bp (695 high quality bases) assembled on 2006-05-08

> BO12846.3prime
ATGGTCTAGAAAGCTTGCGATTGCACTTTGCTCGATGTTGTTGGCGCTGG
TTGTTGCTTCTTGTACGCGTTGTTGTTCTAGTTGTTGTTGCAGTAGCAGT
AGTTGTTGTTGTTGTTGTTGTTGTTTGTACGTGCGACCGAGTAAAGGAAC
ATGCTCGTCCTGTAGCTGCCGGTTGATCAGGGCCGTCAGTCCGTGTCCCA
CATCCACACTCTTCTTTAGTATCAACATGGGCTTGTCCTCCGCATCCTCA
GCATATCCACCAGAGGGCAGGAAGCCATTGCTGGCTATCGACTCGCTCAC
CTGGGTGACCTGCATCAGCTTCTTGACCACATCCCGGCCCAGAATGTGAT
CGAAGACGGTCTGCAAGAAGGGCTCGGCCATAATTGACAATTTGAGCTTG
TCGCGATGCCAGATCAGCACCCGCGACTCCTCCATGGCCATGATGGAGAC
CTGAAAGTAGTCATCGGTCGAGACGCCAAACCATTCTGGCGAGTCTAGGA
ACTGATGGGGAAACACAATGTGCAGGGCGCGCTGATGCTGCGACACCACC
AGTTTGCCGCTCAGCACCAGCGACAGGCTGTCGACCTTGGTGACCTTCTC
CTGGGCGTAGACCTCCTGGTACTTCAGGGCACGTATCACCTTCATGCAGT
TGAGCACCTTCTTGAACTGGTGGCGCGTCACGTGCAGCGGCTGGAAAAGT
GCCAGGTAGACCGCTTCGATTTCCTGCTCGAATCGCACAGGCCTCAGCCG
GCATAGCACCACGACGAGATAAATGAAGTTGACAAAA

BO12846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32513-PA 1245 bves-RA 474..1242 787..19 3820 99.8 Minus
CG32513-PB 1245 bves-RB 474..1242 787..19 3820 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RB 3789 CG32513-RB 1188..1956 787..19 3830 99.9 Minus
bves-RA 3952 CG32513-RA 1351..2119 787..19 3830 99.9 Minus
bves-RD 3428 CG32513-RD 1188..1816 787..159 3130 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21075364..21075522 712..554 795 100 Minus
X 23542271 X 21075770..21075924 453..299 775 100 Minus
X 23542271 X 21076039..21076182 302..159 720 100 Minus
X 23542271 X 21076964..21077104 159..19 705 100 Minus
X 23542271 X 21075592..21075696 553..449 525 100 Minus
X 23542271 X 21061482..21061559 787..710 375 98.7 Minus
Blast to na_te.dros performed 2015-02-03 07:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2538 125..69 123 68.4 Minus

BO12846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:35 Download gff for BO12846.3prime
Subject Subject Range Query Range Percent Splice Strand
bves-PB 478..1245 16..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:28 Download gff for BO12846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32513-PB 478..1245 16..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:01 Download gff for BO12846.3prime
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1355..2126 10..783 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:15 Download gff for BO12846.3prime
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1355..2126 10..783 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:15 Download gff for BO12846.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21061486..21061557 712..783 98 -> Minus
X 21075365..21075522 554..711 100 -> Minus
X 21075592..21075694 451..553 100 -> Minus
X 21075773..21075922 301..450 100 -> Minus
X 21076041..21076182 159..300 100 -> Minus
X 21076965..21077111 10..158 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:01 Download gff for BO12846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20947992..20948138 10..158 97   Minus
arm_X 20947068..20947209 159..300 100 -> Minus
arm_X 20946619..20946721 451..553 100 -> Minus
arm_X 20946800..20946949 301..450 100 -> Minus
arm_X 20932513..20932584 712..783 98 -> Minus
arm_X 20946392..20946549 554..711 100 -> Minus

BO12846.5prime Sequence

846 bp (779 high quality bases) assembled on 2006-05-08

> BO12846.5prime
GAAGTTATCAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTG
GTATGGGCGCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATG
GGCATTGGCATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAG
TTCGGGATCTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGA
GCACGGCGGGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAAC
AATGGAACCCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTG
CCTCGGGCCACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCC
TAGCCTTTTTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCC
ATGCTGCTCATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGC
CTTTGCACCGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACT
TCATCTATCTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAG
CAGGAAATCGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGAC
GCGCCACCAGTTCAAGAAGGTGCTCAACTGCATGAAGGTGATACGTGCCC
TGAAGTACCAGGAGGTCTACGCCCAGGAGAAGGTCACCAAGGTCGACAGC
CTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGC
CCTGCACATTGTGTTTCCCCATCAGTTCCTAGACCCGCCAGAATGGTTTG
GCGTCTCGACCGATGACTACTTTCAGGTCTCCATCATGGCCATGGA

BO12846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32513-PA 1245 bves-RA 1..830 17..846 4125 99.8 Plus
CG32513-PB 1245 bves-RB 1..830 17..846 4125 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RD 3428 CG32513-RD 715..1544 17..846 4135 99.9 Plus
bves-RC 3461 CG32513-RC 715..1544 17..846 4135 99.9 Plus
bves-RB 3789 CG32513-RB 715..1544 17..846 4135 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21061009..21061559 17..567 2755 100 Plus
X 23542271 X 21075364..21075522 565..723 795 100 Plus
X 23542271 X 21075592..21075696 724..828 510 99 Plus
Blast to na_te.dros performed on 2015-02-09 09:01:07 has no hits.

BO12846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:36 Download gff for BO12846.5prime
Subject Subject Range Query Range Percent Splice Strand
bves-PB 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:29 Download gff for BO12846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32513-PB 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:13 Download gff for BO12846.5prime
Subject Subject Range Query Range Percent Splice Strand
bves-RB 706..1543 7..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:59 Download gff for BO12846.5prime
Subject Subject Range Query Range Percent Splice Strand
bves-RB 706..1543 7..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:59 Download gff for BO12846.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21061006..21061557 11..565 99 -> Plus
X 21075365..21075522 566..723 100 -> Plus
X 21075592..21075694 724..826 99 -> Plus
X 21075773..21075791 827..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:13 Download gff for BO12846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20932033..20932584 11..565 99 -> Plus
arm_X 20946392..20946549 566..723 100 -> Plus
arm_X 20946619..20946721 724..826 99 -> Plus
arm_X 20946800..20946818 827..845 100   Plus

BO12846.complete Sequence

1276 bp assembled on 2006-10-11

GenBank Submission: FJ632602

> BO12846.complete
GAAGTTATCAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTG
GTATGGGCGCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATG
GGCATTGGCATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAG
TTCGGGATCTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGA
GCACGGCGGGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAAC
AATGGAACCCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTG
CCTCGGGCCACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCC
TAGCCTTTTTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCC
ATGCTGCTCATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGC
CTTTGCACCGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACT
TCATCTATCTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAG
CAGGAAATCGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGAC
GCGCCACCAGTTCAAGAAGGTGCTCAACTGCATGAAGGTGATACGTGCCC
TGAAGTACCAGGAGGTCTACGCCCAGGAGAAGGTCACCAAGGTCGACAGC
CTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGC
CCTGCACATTGTGTTTCCCCATCAGTTCCTAGACTCGCCAGAATGGTTTG
GCGTCTCGACCGATGACTACTTTCAGGTCTCCATCATGGCCATGGAGGAG
TCGCGGGTGCTGATCTGGCATCGCGACAAGCTCAAATTGTCAATTATGGC
CGAGCCCTTCTTGCAGACCGTCTTCGATCACATTCTGGGCCGGGATGTGG
TCAAGAAGCTGATGCAGGTCACCCAGGTGAGCGAGTCGATAGCCAGCAAT
GGCTTCCTGCCCTCTGGTGGATATGCTGAGGATGCGGAGGACAAGCCCAT
GTTGATACTAAAGAAGAGTGTGGATGTGGGACACGGACTGACGGCCCTGA
TCAACCGGCAGCTACAGGACGAGCATGTTCCTTTACTCGGTCGCACGTAC
AAACAACAACAACAACAACAACAACTACTGCTACTGCAACAACAACTAGA
ACAACAACGCGTACAAGAAGCAACAACCAGCGCCAACAACATCGAGCAAA
GTGCAATCGCAAGCTTTCTAGACCAT

BO12846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RB 1245 CG32513-PB 1..1242 17..1258 6210 100 Plus
bves-RA 1245 CG32513-PA 1..1242 17..1258 6210 100 Plus
bves-RD 1167 CG32513-PD 1..1102 17..1118 5510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RB 3789 CG32513-RB 715..1956 17..1258 6210 100 Plus
bves-RA 3952 CG32513-RA 878..2119 17..1258 6210 100 Plus
bves-RD 3428 CG32513-RD 715..1816 17..1118 5510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21061009..21061559 17..567 2755 100 Plus
X 23542271 X 21075364..21075522 565..723 795 100 Plus
X 23542271 X 21075770..21075924 824..978 775 100 Plus
X 23542271 X 21076039..21076182 975..1118 720 100 Plus
X 23542271 X 21076964..21077104 1118..1258 705 100 Plus
X 23542271 X 21075592..21075696 724..828 525 100 Plus
Blast to na_te.dros performed 2014-11-28 08:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2538 1152..1208 123 68.4 Plus

BO12846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:52 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 1..1245 17..1261 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:48 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 710..1951 17..1260 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:27 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 878..2119 17..1260 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:52 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 701..1958 7..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:52 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 878..2119 17..1260 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:52 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
X 21076041..21076182 977..1118 100 -> Plus
X 21076965..21077104 1119..1260 98   Plus
X 21075592..21075694 724..826 100 -> Plus
X 21075773..21075922 827..976 100 -> Plus
X 21061009..21061557 17..565 100 -> Plus
X 21075365..21075522 566..723 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:27 Download gff for BO12846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20946800..20946949 827..976 100 -> Plus
arm_X 20947068..20947209 977..1118 100 -> Plus
arm_X 20947992..20948131 1119..1260 98   Plus
arm_X 20932036..20932584 17..565 100 -> Plus
arm_X 20946392..20946549 566..723 100 -> Plus
arm_X 20946619..20946721 724..826 100 -> Plus

BO12846.pep Sequence

Translation from 16 to 1276

> BO12846.pep
MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA
DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH
LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV
ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK
KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF
PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ
TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK
SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ
EATTSANNIEQSAIASFLDH

BO12846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
bves-PB 414 CG32513-PB 1..414 1..414 2119 100 Plus
bves-PA 414 CG32513-PA 1..414 1..414 2119 100 Plus
bves-PD 388 CG32513-PD 1..367 1..367 1889 100 Plus
bves-PC 399 CG32513-PC 1..367 1..367 1889 100 Plus