Clone BO12848 Report

Search the DGRC for BO12848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG10005-RA
Protein status:BO12848.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO12848.3prime Sequence

725 bp (724 high quality bases) assembled on 2006-05-08

> BO12848.3prime
ATGGTCTAGAAAGCTTGCGAGCTCATCTCGCGCCTGGGAGGACGATGGCA
GCGTCACCTCCTCCACGGAGCCCAGGTGTATGGTTCTATTTGGCCGACTG
AACTTTGGTATGTATGCGACCGAGTCGCTGTTGCTGACCACCGAGTTATG
TAGGTGTTCCGTGGGTGCCGCGGGATCAGGACTTGTGAGTGTGATTTTCG
AACCAGTGGCCACTCTGTCCCTGGCCTGCATGCTGGCCTCCACGTCCAGG
TTGCGAGGCTGCCGGAAGTCGCATTCCAGCGAGAAGGCCGAATCTCCGGG
TGTGATCAGCTCTGGGTCGTTTTGGATCACCACGATGTTGGTGTAGAGAT
CACCATCCCGGATCGTCTGGCACTGGTCCAGCTGGAAGTTCATCTCCATT
GTGCGGGATCCCTGGCTGGAAGATGGCTTCATGAAGCACGGCGCAGACTG
CTTGTAGAAGCTGCCACGAGTGTACATCACACCCATGAAAGGCTTCTCCG
TCTCCAGCACCACGTTCATGGAGTCCGCTCCGCACTTGAGGTTAACCTTT
TGAATGCCCTGGTCGCTGCCCTCGATTTTAAAGGTGTCCGAAAGGTCTTG
TTCCCAGATTTCTTGGTTTTGATTTTTCTGCTGCTTATTGGCAGATACGT
GCACAGCCAACAGCAAATTGCAGGCGAACAAAAGCAGAAAGCCATTCATT
AATCCCGACATGTCGACTGATAACT

BO12848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 696 CG10005-RA 1..693 711..19 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 1055 CG10005-RA 110..802 711..19 3465 100 Minus
CG10005-RB 880 CG10005-RB 110..607 711..214 2490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 215..613 1995 100 Plus
3R 32079331 3R 11975519..11975718 19..218 1000 100 Plus
3R 32079331 3R 11976989..11977088 612..711 500 100 Plus
Blast to na_te.dros performed on 2015-02-02 20:34:01 has no hits.

BO12848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:39 Download gff for BO12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-PA 1..696 18..711 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:33 Download gff for BO12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-PA 1..696 18..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:19 Download gff for BO12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..802 19..719 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:36 Download gff for BO12848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..802 19..719 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:36 Download gff for BO12848.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11976989..11977095 612..719 97   Plus
3R 11975519..11975714 19..214 100 <- Plus
3R 11976099..11976495 215..611 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:19 Download gff for BO12848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7802711..7802817 612..719 97   Plus
arm_3R 7801241..7801436 19..214 100 <- Plus
arm_3R 7801821..7802217 215..611 100 <- Plus

BO12848.5prime Sequence

725 bp (662 high quality bases) assembled on 2006-05-08

> BO12848.5prime
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCGCAAGCTTTCTAGACC

BO12848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 696 CG10005-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 1055 CG10005-RA 110..802 17..709 3465 100 Plus
CG10005-RB 880 CG10005-RB 110..607 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 513..115 1995 100 Minus
3R 32079331 3R 11975519..11975718 709..510 1000 100 Minus
3R 32079331 3R 11976989..11977088 116..17 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:38 has no hits.

BO12848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:40 Download gff for BO12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-PA 1..696 17..710 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:34 Download gff for BO12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-PA 1..696 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:26 Download gff for BO12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..802 9..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:17 Download gff for BO12848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 103..802 9..709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:17 Download gff for BO12848.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11975519..11975714 514..709 100 <- Minus
3R 11976099..11976495 117..513 100 <- Minus
3R 11976989..11977095 9..116 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:26 Download gff for BO12848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7801241..7801436 514..709 100 <- Minus
arm_3R 7801821..7802217 117..513 100 <- Minus
arm_3R 7802711..7802817 9..116 97   Minus

BO12848.complete Sequence

727 bp assembled on 2006-10-11

GenBank Submission: FJ632603

> BO12848.complete
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCGCAAGCTTTCTAGACCAT

BO12848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 696 CG10005-PA 1..693 17..709 3465 100 Plus
CG10005-RB 549 CG10005-PB 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-RA 1055 CG10005-RA 110..802 17..709 3465 100 Plus
CG10005-RB 880 CG10005-RB 110..607 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11976099..11976497 513..115 1995 100 Minus
3R 32079331 3R 11975519..11975718 709..510 1000 100 Minus
3R 32079331 3R 11976989..11977088 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:49:58 has no hits.

BO12848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:53 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 1..696 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:20 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 96..795 9..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:33 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 110..802 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:53 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 96..795 9..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:43 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10005-RA 110..802 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:43 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11975517..11975714 514..711 98 <- Minus
3R 11976099..11976495 117..513 100 <- Minus
3R 11976989..11977088 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:33 Download gff for BO12848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7801239..7801436 514..711 98 <- Minus
arm_3R 7801821..7802217 117..513 100 <- Minus
arm_3R 7802711..7802810 17..116 100   Minus

BO12848.pep Sequence

Translation from 16 to 727

> BO12848.pep
MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD
QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ
GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR
QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY
IPKFSRPNRTIHLGSVEEVTLPSSSQARDELASFLDH

BO12848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10005-PA 231 CG10005-PA 1..231 1..231 1193 100 Plus
CG10005-PB 182 CG10005-PB 1..166 1..166 866 100 Plus