Clone Sequence Records
BO12848.3prime Sequence
725 bp (724 high quality bases) assembled on 2006-05-08
> BO12848.3prime
ATGGTCTAGAAAGCTTGCGAGCTCATCTCGCGCCTGGGAGGACGATGGCA
GCGTCACCTCCTCCACGGAGCCCAGGTGTATGGTTCTATTTGGCCGACTG
AACTTTGGTATGTATGCGACCGAGTCGCTGTTGCTGACCACCGAGTTATG
TAGGTGTTCCGTGGGTGCCGCGGGATCAGGACTTGTGAGTGTGATTTTCG
AACCAGTGGCCACTCTGTCCCTGGCCTGCATGCTGGCCTCCACGTCCAGG
TTGCGAGGCTGCCGGAAGTCGCATTCCAGCGAGAAGGCCGAATCTCCGGG
TGTGATCAGCTCTGGGTCGTTTTGGATCACCACGATGTTGGTGTAGAGAT
CACCATCCCGGATCGTCTGGCACTGGTCCAGCTGGAAGTTCATCTCCATT
GTGCGGGATCCCTGGCTGGAAGATGGCTTCATGAAGCACGGCGCAGACTG
CTTGTAGAAGCTGCCACGAGTGTACATCACACCCATGAAAGGCTTCTCCG
TCTCCAGCACCACGTTCATGGAGTCCGCTCCGCACTTGAGGTTAACCTTT
TGAATGCCCTGGTCGCTGCCCTCGATTTTAAAGGTGTCCGAAAGGTCTTG
TTCCCAGATTTCTTGGTTTTGATTTTTCTGCTGCTTATTGGCAGATACGT
GCACAGCCAACAGCAAATTGCAGGCGAACAAAAGCAGAAAGCCATTCATT
AATCCCGACATGTCGACTGATAACT
BO12848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-PA | 696 | CG10005-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 1055 | CG10005-RA | 110..802 | 711..19 | 3465 | 100 | Minus |
CG10005-RB | 880 | CG10005-RB | 110..607 | 711..214 | 2490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11976099..11976497 | 215..613 | 1995 | 100 | Plus |
3R | 32079331 | 3R | 11975519..11975718 | 19..218 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 11976989..11977088 | 612..711 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:34:01 has no hits.
BO12848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:39 Download gff for
BO12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:33 Download gff for
BO12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:19 Download gff for
BO12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..802 | 19..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:36 Download gff for
BO12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..802 | 19..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:36 Download gff for
BO12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11976989..11977095 | 612..719 | 97 | | Plus |
3R | 11975519..11975714 | 19..214 | 100 | <- | Plus |
3R | 11976099..11976495 | 215..611 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:19 Download gff for
BO12848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7802711..7802817 | 612..719 | 97 | | Plus |
arm_3R | 7801241..7801436 | 19..214 | 100 | <- | Plus |
arm_3R | 7801821..7802217 | 215..611 | 100 | <- | Plus |
BO12848.5prime Sequence
725 bp (662 high quality bases) assembled on 2006-05-08
> BO12848.5prime
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCGCAAGCTTTCTAGACC
BO12848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-PA | 696 | CG10005-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 1055 | CG10005-RA | 110..802 | 17..709 | 3465 | 100 | Plus |
CG10005-RB | 880 | CG10005-RB | 110..607 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11976099..11976497 | 513..115 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 11975519..11975718 | 709..510 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 11976989..11977088 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:38 has no hits.
BO12848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:40 Download gff for
BO12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:34 Download gff for
BO12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:26 Download gff for
BO12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..802 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:17 Download gff for
BO12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 103..802 | 9..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:17 Download gff for
BO12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11975519..11975714 | 514..709 | 100 | <- | Minus |
3R | 11976099..11976495 | 117..513 | 100 | <- | Minus |
3R | 11976989..11977095 | 9..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:26 Download gff for
BO12848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7801241..7801436 | 514..709 | 100 | <- | Minus |
arm_3R | 7801821..7802217 | 117..513 | 100 | <- | Minus |
arm_3R | 7802711..7802817 | 9..116 | 97 | | Minus |
BO12848.complete Sequence
727 bp assembled on 2006-10-11
GenBank Submission: FJ632603
> BO12848.complete
GAAGTTATCAGTCGACATGTCGGGATTAATGAATGGCTTTCTGCTTTTGT
TCGCCTGCAATTTGCTGTTGGCTGTGCACGTATCTGCCAATAAGCAGCAG
AAAAATCAAAACCAAGAAATCTGGGAACAAGACCTTTCGGACACCTTTAA
AATCGAGGGCAGCGACCAGGGCATTCAAAAGGTTAACCTCAAGTGCGGAG
CGGACTCCATGAACGTGGTGCTGGAGACGGAGAAGCCTTTCATGGGTGTG
ATGTACACTCGTGGCAGCTTCTACAAGCAGTCTGCGCCGTGCTTCATGAA
GCCATCTTCCAGCCAGGGATCCCGCACAATGGAGATGAACTTCCAGCTGG
ACCAGTGCCAGACGATCCGGGATGGTGATCTCTACACCAACATCGTGGTG
ATCCAAAACGACCCAGAGCTGATCACACCCGGAGATTCGGCCTTCTCGCT
GGAATGCGACTTCCGGCAGCCTCGCAACCTGGACGTGGAGGCCAGCATGC
AGGCCAGGGACAGAGTGGCCACTGGTTCGAAAATCACACTCACAAGTCCT
GATCCCGCGGCACCCACGGAACACCTACATAACTCGGTGGTCAGCAACAG
CGACTCGGTCGCATACATACCAAAGTTCAGTCGGCCAAATAGAACCATAC
ACCTGGGCTCCGTGGAGGAGGTGACGCTGCCATCGTCCTCCCAGGCGCGA
GATGAGCTCGCAAGCTTTCTAGACCAT
BO12848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 696 | CG10005-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
CG10005-RB | 549 | CG10005-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-RA | 1055 | CG10005-RA | 110..802 | 17..709 | 3465 | 100 | Plus |
CG10005-RB | 880 | CG10005-RB | 110..607 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11976099..11976497 | 513..115 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 11975519..11975718 | 709..510 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 11976989..11977088 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:58 has no hits.
BO12848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:53 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:20 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 96..795 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:33 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 110..802 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:53 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 96..795 | 9..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:43 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10005-RA | 110..802 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:43 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11975517..11975714 | 514..711 | 98 | <- | Minus |
3R | 11976099..11976495 | 117..513 | 100 | <- | Minus |
3R | 11976989..11977088 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:33 Download gff for
BO12848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7801239..7801436 | 514..711 | 98 | <- | Minus |
arm_3R | 7801821..7802217 | 117..513 | 100 | <- | Minus |
arm_3R | 7802711..7802810 | 17..116 | 100 | | Minus |
BO12848.pep Sequence
Translation from 16 to 727
> BO12848.pep
MSGLMNGFLLLFACNLLLAVHVSANKQQKNQNQEIWEQDLSDTFKIEGSD
QGIQKVNLKCGADSMNVVLETEKPFMGVMYTRGSFYKQSAPCFMKPSSSQ
GSRTMEMNFQLDQCQTIRDGDLYTNIVVIQNDPELITPGDSAFSLECDFR
QPRNLDVEASMQARDRVATGSKITLTSPDPAAPTEHLHNSVVSNSDSVAY
IPKFSRPNRTIHLGSVEEVTLPSSSQARDELASFLDH
BO12848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10005-PA | 231 | CG10005-PA | 1..231 | 1..231 | 1193 | 100 | Plus |
CG10005-PB | 182 | CG10005-PB | 1..166 | 1..166 | 866 | 100 | Plus |