Clone Sequence Records
BO12849.3prime Sequence
853 bp (802 high quality bases) assembled on 2006-05-08
> BO12849.3prime
ATGGTCTAGAAAGCTTGCCCGCACAAAGCTAAACTTGAGTACGCCAGATG
TGTAGTCCGTATTGGGTCCAATCTGTTTTGCATCCACCTTTATCAGCCTT
ATGTTATCAACGCAGCGCGAACTTTGAACTATTTCCGGATTGATATCGCT
ATGCCGGATCCACAGCTCTAGAGGGCGAATGCGCCAGCTTTGCTTGGCCA
AAATGGCAATACACCTCCAGACGAAGGATTCTCCATGGCAGAAGGTTCGA
GTGATGTCGAGGACTCTCAGCTGTCGACAATTGATCACGAATTCCAGCAG
GCCCAAAGGACTCTCCAACTGATAGCCACACAAATGGAGTTCGGTTAGCT
CACCCAGTTGACTGGCTAGCTGCCGCAGTATCTGATCCCCCAGGCACTGC
ACCTGGACGCCCTCCTCCTTCTCCTCCTCTTCCTCTGGCTGGCTGTGCAG
CTCCAGTCGCGTCAAGTGACTAAGATTTCCCAGCTCCCTGAAGAACCGGC
CATAGTCGTGCAAAACTCCACTGAAACTAAAGGCCTCAATTTGTCGGCCA
TCGCCGGGAGGACTTGTGGGACTAACTATCCTCGATAGGACATCAAAGAC
AAAGTTCCTGGAATAGATCGACAGCTTTCGCAGGTTTGGCAATGTCAGTA
GTTGCTGCGTAATATCCGACTCCATACACACGTGGTAATCCGCAATCTTG
ATATGCTCCAGTGTGGGACACAGCTGCAGATCCGCCAGATCACAGCAGTT
CACCTCGTCACAGTCCTCCATTATGTCAAATTTGCGTAGTCGCAGCTGCC
GGAAGATGTCCCTAAAGTGTTGCGATTCCAGAAAATGGCAATCATGCAGG
CGG
BO12849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-PA | 1338 | CG14937-RA | 501..1335 | 853..19 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-RA | 1596 | CG14937-RA | 540..1374 | 853..19 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11792634..11793468 | 19..853 | 4175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:40:09 has no hits.
BO12849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:41 Download gff for
BO12849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-PA | 501..1338 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:35 Download gff for
BO12849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-PA | 501..1338 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:17 Download gff for
BO12849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 540..1377 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:36 Download gff for
BO12849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 540..1377 | 15..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:36 Download gff for
BO12849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11792630..11793468 | 15..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:17 Download gff for
BO12849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11792630..11793468 | 15..853 | 99 | | Plus |
BO12849.5prime Sequence
846 bp (789 high quality bases) assembled on 2006-05-08
> BO12849.5prime
GAAGTTATCAGTCGACATGACGTCCGCAAGCGATACAGAACCCACTGCAG
TAACGCTGCTCCAGCTGAATGACGATGTCCTGGCTTTGATCATCCGCCAG
CTGGACACGTACCAGCAGTTCCAGATTAGCAGGTTGAACAGGCGCTTGGC
GGGCGTAGTGCACATGCTCTGGGAGACCCGTGTTCGCAACGTTGTCCTGC
AGGACGAGATGTTCGGACGCTCGGGAGCCAATTCCCGACAGTTTGTGGCT
TTCATCTTGGCCCTGGCTCCGCACATGCAGCACCTGAGTTGCAAGCAGTT
GGATGTCCGAAGACTGCGACTGCTCAGTAACCACACGCTGGAGAGGATTC
ACTCTTTCGAGTGGCTGGGCAATGTGTATAGACGGAGACGCGTTCGCTTC
GTGGATGAGGATGTGCGAATGCTGCAGAGGGTATTTCCCAATCTAAAAAG
CCTCAAACTTAGAGGCTGCCAAATTACCGGAAAATACCTATGCGACCTGG
ATGAGCTTACCGATCTCCGCCTGCATGATTGCCATTTTCTGGAATCGCAA
CACTTTAGGGACATCTTCCGGCAGCTGCGACTACGCAAATTTGACATAAT
GGAGGACTGTGACGAGGTGAACTGCTGTGATCTGGCGGATCTGCAGCTGT
GTCCCACACTGGAGCATATCAAGATTGCGGATTACCACGTGTGTATGGAG
TCGGATATTACGCAGCAACTACTGACATTGCCAAACCTGCGAAAGCTGTC
GATCTATTCCAGGAACTTTGTCTTTGATGTCCTATCGAGGATAGTTAGTC
CCACAAGTCCTCCCGGCGATGGCCGACAAATTGAGGCCTTTAGTTT
BO12849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-PA | 1338 | CG14937-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-RA | 1596 | CG14937-RA | 40..869 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11793139..11793948 | 846..37 | 4050 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 23:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 212..256 | 711..753 | 121 | 77.8 | Plus |
BO12849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:42 Download gff for
BO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:37 Download gff for
BO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:39 Download gff for
BO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 40..869 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:50 Download gff for
BO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 40..869 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:50 Download gff for
BO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11793139..11793946 | 39..846 | 100 | <- | Minus |
| 2L | 11794026..11794047 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:39 Download gff for
BO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11793139..11793946 | 39..846 | 100 | <- | Minus |
| arm_2L | 11794026..11794047 | 17..38 | 100 | | Minus |
BO12849.complete Sequence
1369 bp assembled on 2006-10-11
GenBank Submission: FJ632604
> BO12849.complete
GAAGTTATCAGTCGACATGACGTCCGCAAGCGATACAGAACCCACTGCAG
TAACGCTGCTCCAGCTGAATGACGATGTCCTGGCTTTGATCATCCGCCAG
CTGGACACGTACCAGCAGTTCCAGATTAGCAGGTTGAACAGGCGCTTGGC
GGGCGTAGTGCACATGCTCTGGGAGACCCGTGTTCGCAACGTTGTCCTGC
AGGACGAGATGTTCGGACGCTCGGGAGCCAATTCCCGACAGTTTGTGGCT
TTCATCTTGGCCCTGGCTCCGCACATGCAGCACCTGAGTTGCAAGCAGTT
GGATGTCCGAAGACTGCGACTGCTCAGTAACCACACGCTGGAGAGGATTC
ACTCTTTCGAGTGGCTGGGCAATGTGTATAGACGGAGACGCGTTCGCTTC
GTGGATGAGGATGTGCGAATGCTGCAGAGGGTATTTCCCAATCTAAAAAG
CCTCAAACTTAGAGGCTGCCAAATTACCGGAAAATACCTATGCGACCTGG
ATGAGCTTACCGATCTCCGCCTGCATGATTGCCATTTTCTGGAATCGCAA
CACTTTAGGGACATCTTCCGGCAGCTGCGACTACGCAAATTTGACATAAT
GGAGGACTGTGACGAGGTGAACTGCTGTGATCTGGCGGATCTGCAGCTGT
GTCCCACACTGGAGCATATCAAGATTGCGGATTACCACGTGTGTATGGAG
TCGGATATTACGCAGCAACTACTGACATTGCCAAACCTGCGAAAGCTGTC
GATCTATTCCAGGAACTTTGTCTTTGATGTCCTATCGAGGATAGTTAGTC
CCACAAGTCCTCCCGGCGATGGCCGACAAATTGAGGCCTTTAGTTTCAGT
GGAGTTTTGCACGACTATGGCCGGTTCTTCAGGGAGCTGGGAAATCTTAG
TCACTTGACGCGACTGGAGCTGCACAGCCAGCCAGAGGAAGAGGAGGAGA
AGGAGGAGGGCGTCCAGGTGCAGTGCCTGGGGGATCAGATACTGCGGCAG
CTAGCCAGTCAACTGGGTGAGCTAACCGAACTCCATTTGTGTGGCTATCA
GTTGGAGAGTCCTTTGGGCCTGCTGGAATTCGTGATCAATTGTCGACAGC
TGAGAGTCCTCGACATCACTCGAACCTTCTGCCATGGAGAATCCTTCGTC
TGGAGGTGTATTGCCATTTTGGCCAAGCAAAGCTGGCGCATTCGCCCTCT
AGAGCTGTGGATCCGGCATAGCGATATCAATCCGGAAATAGTTCAAAGTT
CGCGCTGCGTTGATAACATAAGGCTGATAAAGGTGGATGCAAAACAGATT
GGACCCAATACGGACTACACATCTGGCGTACTCAAGTTTAGCTTTGTGCG
GGCAAGCTTTCTAGACCAT
BO12849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-RA | 1338 | CG14937-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-RA | 1596 | CG14937-RA | 40..1374 | 17..1351 | 6675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11792634..11793948 | 1351..37 | 6575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:02:38 has no hits.
BO12849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:55 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 1..1338 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:24 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 37..1374 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:12 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 40..1374 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:55 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 37..1374 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:02 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14937-RA | 40..1374 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:02 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11792632..11793946 | 39..1353 | 99 | <- | Minus |
| 2L | 11794026..11794047 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:12 Download gff for
BO12849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11792632..11793946 | 39..1353 | 99 | <- | Minus |
| arm_2L | 11794026..11794047 | 17..38 | 100 | | Minus |
BO12849.pep Sequence
Translation from 16 to 1369
> BO12849.pep
MTSASDTEPTAVTLLQLNDDVLALIIRQLDTYQQFQISRLNRRLAGVVHM
LWETRVRNVVLQDEMFGRSGANSRQFVAFILALAPHMQHLSCKQLDVRRL
RLLSNHTLERIHSFEWLGNVYRRRRVRFVDEDVRMLQRVFPNLKSLKLRG
CQITGKYLCDLDELTDLRLHDCHFLESQHFRDIFRQLRLRKFDIMEDCDE
VNCCDLADLQLCPTLEHIKIADYHVCMESDITQQLLTLPNLRKLSIYSRN
FVFDVLSRIVSPTSPPGDGRQIEAFSFSGVLHDYGRFFRELGNLSHLTRL
ELHSQPEEEEEKEEGVQVQCLGDQILRQLASQLGELTELHLCGYQLESPL
GLLEFVINCRQLRVLDITRTFCHGESFVWRCIAILAKQSWRIRPLELWIR
HSDINPEIVQSSRCVDNIRLIKVDAKQIGPNTDYTSGVLKFSFVRASFLD
H
BO12849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14937-PA | 445 | CG14937-PA | 1..445 | 1..445 | 2325 | 100 | Plus |
| CG13088-PA | 401 | CG13088-PA | 3..332 | 16..370 | 244 | 23.8 | Plus |
