Clone Sequence Records
BO12850.3prime Sequence
879 bp (737 high quality bases) assembled on 2006-05-08
> BO12850.3prime
ATGGTCTAGAAAGCTTGCATCGTACTCATGGCTTGATTCCCGCTTTGCAA
TCAGGTTCTCGCGCTCATCATCGTTGCCCTCGATGATGGTGATTCCGCCC
AAGCCGCTTCCGTGGTTTCGGTTTAGCTGCTTCACACGGTGCACCGTCTC
CGTGAGACCAGATTCGGTAAGCACCTCCACCTCGTCGTCATCCTCGTCTT
CGTCCGGCACGGTGAAGTATGGATGCGAGGATACTGGACGGAACTTGTAG
CCAGTCAGCACGAAGAACACGTATGTGGCCATCTCACGGAACATCTCGTC
TAGCCAGGCGTATTGGAACACCACCGTCATCTGCAGCAGATCGACGATGA
TCCGCGTGAAGTAGATATAGCACACGATCATGATGTAGAACTGACGGAAC
AGCTTCAACTTGCGCAAATTGATCGCCGCCTTGCCATCTGTCGCAGAGGC
CTCATGTAGATGTCGGATGGACCATACGATTGGAAAGAGAATGGCGCCGC
AGCACAGCAGATCCACGAAGAAGAAGATGTTGTGCCAGGTACGGAACTCG
GCGTCGCTCTGATCAGACTCGTCCGTAATGATCTGGGCCACGTTGGCCAG
AACCTGCAGTGGAATTACGATCATGAAAATCTTCTTGTCCTTGTCAGAGA
GAATGTGCTTAATAAAAGTCCAGCCGGTGCCAATCAAAACGATGGTGATG
AAGAGCACGGCGCCCTTCAGCAGGTGGGCAATGTAGTAAAGGATGGCCCA
GGTCTCCACATGCTCGCCCCGCTTTTCGATGAAGTGATAGTTGATCGAAT
GGAACATCAGCGAGAGGGACTTGAGGGAACCCAGCACGGCCATCAAATAA
TGGATTTTGTACACAGTGTGCTTGCTCTT
BO12850.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-PA | 2217 | CG12121-RA | 1407..2214 | 826..19 | 4040 | 100 | Minus |
| CG12121-PA | 2217 | CG12121-RA | 1354..1402 | 879..831 | 245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-RA | 2954 | CG12121-RA | 1619..2479 | 879..19 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9229271..9229858 | 19..606 | 2940 | 100 | Plus |
| X | 23542271 | X | 9230177..9230450 | 602..875 | 1310 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:59:09 has no hits.
BO12850.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:43 Download gff for
BO12850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-PA | 1354..2217 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:38 Download gff for
BO12850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-PA | 1354..2217 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:59 Download gff for
BO12850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 1619..2484 | 13..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:14 Download gff for
BO12850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 1619..2484 | 13..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:14 Download gff for
BO12850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9229266..9229855 | 13..603 | 99 | <- | Plus |
| X | 9230179..9230451 | 604..879 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:59 Download gff for
BO12850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9123299..9123888 | 13..603 | 99 | <- | Plus |
| arm_X | 9124212..9124484 | 604..879 | 97 | | Plus |
BO12850.5prime Sequence
907 bp (770 high quality bases) assembled on 2006-05-08
> BO12850.5prime
GAAGTTATCAGTCGACATGTGGGCTCCCGGCGGGGATGTTAAATCAATAG
TGGTGCTGGCGGCACTGACGGCGCTTCTCTGGGCCCCACTTGAGGTCCTT
GGGCGGAAGCACCATCTGGAAGTGAGGAATGACCGTCGCCAGTACATCGC
ACTCAGCACCTTTGGATTCTACACTAATGGCCATTTGGATGTGCAGCTCA
GCAAATTGACTTTTGACAATGAGCAGTCTACAGATTTGATGGGTCTGTCG
CTGGATAAGACCACTATTGACCAGCTTAATCCCTATTTGGACTCGCATCA
AAACAAATGCATTCTCGAGGAATCACCTAAATCCCAGATCAGCGGACCCA
TTCTCTTCTTCGTGCTGGACCTCAAGGAGCTTAAAGTTCGTGTTAAGTGC
TCCCCCGAATGGCACAATATGCACATCTACAACCAAATCCCGTCCAGAAC
CAAGCGGCACTCACACATGGCCAAGGTCAGCGATTCGGTTCTGTTTCGCC
AGACCCGCGCTGCCCAAGATTTCTCCGCCGAGGGGCCAGATGAGTCCATG
GAGGATCCCTTGGAGCAAGAACCGACGGATTTAAAGTCTTCCTCGCCTGC
TGCGGTTGCAGGCAAAATTGAGCTGCCCAAAGATGAAGGTGCACCCAAGG
TAGATGCTCCTGCCCAAAATGTTGATGCTGTCAAAGAGGAGTCTGTTCCC
AAGCCAGAAGTGGCTGCCAATCAGAATATTTCTGACAAGCAGGAACTGCC
TCCCCCACCAAATGCCGCCCCTAAAGTGGAGGAAGCCGTTAAGAGTGAAC
AGAAACAGGAGGAAGCCCCCGCTGAAAAGGATGAAACCCCTTCGAAAAAG
GAGGAAACCCCAGCAAAGCAAGTATCCGTAAAGAAGCAAAAGTCGCAGCC
CCCCCAC
BO12850.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-PA | 2217 | CG12121-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-RA | 2954 | CG12121-RA | 266..1157 | 17..907 | 4375 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9231035..9231558 | 907..385 | 2510 | 99 | Minus |
| X | 23542271 | X | 9231621..9231767 | 384..238 | 735 | 100 | Minus |
| X | 23542271 | X | 9231828..9231939 | 238..127 | 560 | 100 | Minus |
| X | 23542271 | X | 9232003..9232113 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:39:18 has no hits.
BO12850.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:44 Download gff for
BO12850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:39 Download gff for
BO12850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:36 Download gff for
BO12850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..1157 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:44 Download gff for
BO12850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..1157 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:44 Download gff for
BO12850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9231035..9231558 | 385..907 | 99 | <- | Minus |
| X | 9231621..9231766 | 239..384 | 100 | <- | Minus |
| X | 9231828..9231938 | 128..238 | 100 | <- | Minus |
| X | 9232003..9232113 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:36 Download gff for
BO12850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9125068..9125591 | 385..907 | 99 | <- | Minus |
| arm_X | 9125654..9125799 | 239..384 | 100 | <- | Minus |
| arm_X | 9125861..9125971 | 128..238 | 100 | <- | Minus |
| arm_X | 9126036..9126146 | 17..127 | 100 | | Minus |
BO12850.complete Sequence
2248 bp assembled on 2008-01-17
GenBank Submission: FJ632605
> BO12850.complete
GAAGTTATCAGTCGACATGTGGGCTCCCGGCGGGGATGTTAAATCAATAG
TGGTGCTGGCGGCACTGACGGCGCTTCTCTGGGCCCCACTTGAGGTCCTT
GGGCGGAAGCACCATCTGGAAGTGAGGAATGACCGTCGCCAGTACATCGC
ACTCAGCACCTTTGGATTCTACACTAATGGCCATTTGGATGTGCAGCTCA
GCAAATTGACTTTTGACAATGAGCAGTCTACAGATTTGATGGGTCTGTCG
CTGGATAAGACCACTATTGACCAGCTTAATCCCTATTTGGACTCGCATCA
AAACAAATGCATTCTCGAGGAATCACCTAAATCCCAGATCAGCGGACCCA
TTCTCTTCTTCGTGCTGGACCTCAAGGAGCTTAAAGTTCGTGTTAAGTGC
TCCCCCGAATGGCACAATATGCACATCTACAACCAAATCCCGTCCAGAAC
CAAGCGGCACTCACACATGGCCAAGGTCAGCGATTCGGTTCTGTTTCGCC
AGACCCGCGCTGCCCAAGATTTCTCCGCCGAGGGGCCAGATGAGTCCATG
GAGGATCCCTTGGAGCAAGAACCGACGGATTTAAAGTCTTCCTCGCCTGC
TGCGGTTGCAGGCAAAATTGAGCTGCCCAAAGATGAAGGTGCACCCAAGG
TAGATGCTCCTGCCCAAAATGTTGATGCTGTCAAAGAGGAGTCTGTTCCC
AAGCCAGAAGTGGCTGCCAATCAGAATATTTCTGACAAGCAGGAACTGCC
TCCCCCACCAAATGCCGCCCCTAAAGTGGAGGAAGCCGTTAAGAGTGAAC
AGAAGCAGGAGGAAGCCCCCGCTGAAAAGGATGAAACCCCTTCGAAAAAG
GAGGAAACCCCAGCAAAGCAAGTATCCGTAGAAGAGCCAAAAGTCGCAGC
CCCACCACTGGCCGTAAATAGCCCAGCAGCTGCTCCGTCCCTAGATGATA
CTGAAGTTGACAAGAAAAATGAAGCCACCGATACGGACGCAGCTCCCGGA
AACCCTTTCCCCCACGAAGGCGATTCCGAAGAAGATTCATATGGACCCGA
CTCCTTTAAGCAATCGCAAGAAAACCTTTGCAAGGATTCGACCATGCCGC
TGGTCAGGGAGACCATCAACAATGTACACTACTACAGCTTCAACTTCTCT
ATGATGGTGGCCACGCCCAGTGATGAGGGCTTGTACAACCTTTACTTCCA
CGCCTGTCCCAATTATCACACCTCAAAAATAATGTCCTTCAATGTGGACA
TCGAGGAGAACAACAATGGCAACTATTTGTCGGCTGGAGAAATGCCCCTG
CCAGCCTTGTACTTCATGATGAGCCTGCTCTTCTTTCTCTCCGGCCTCTT
TTGGGTTTTCATTTTGAAGAAGAGCAAGCACACTGTGTACAAAATCCATT
ATTTGATGGCCGTGCTGGTGTTCCTCAAGTCCCTCTCGCTGATGTTCCAT
TCGATCAACTATCACTTCATCGAAAAGCGGGGCGAGCATGTGGAGACCTG
GGCCATCCTTTACTACATTGCCCACCTGCTGAAGGGCGCCGTGCTCTTCA
TCACCATCGTTTTGATTGGCACCGGCTGGACTTTTATTAAGCACATTCTC
TCTGACAAGGACAAGAAGATTTTCATGATCGTAATTCCACTGCAGGTTCT
GGCCAACGTGGCCCAGATCATTACGGACGAGTCTGATCAGAGCGACGCCG
AGTTCCGTACCTGGCACAACATCTTCTTCTTCGTGGATCTGCTGTGCTGC
GGCGCCATTCTCTTTCCAATCGTATGGTCCATCCGACATCTACATGAGGC
CTCTGCGACAGATGGCAAGGCGGCGATCAATTTGCGCAAGTTGAAGCTGT
TCCGTCAGTTCTACATCATGATCGTGTGCTATATCTACTTCACGCGGATC
ATCGTCGATCTGCTGCAGATGACGGTGGTGTTCCAATACGCCTGGCTAGA
CGAGATGTTCCGTGAGATGGCCACATACGTGTTCTTCGTGCTGACTGGCT
ACAAGTTCCGTCCAGTATCCTCGCATCCATACTTCACCGTGCCGGACGAA
GACGAGGATGACGACGAGGTGGAGGTGCTTACCGAATCTGGTCTCACGGA
GACGGTGCACCGTGTGAAGCAGCTAAACCGAAACCACGGAAGCGGCTTGG
GCGGAATCACCATCATCGAGGGCAACGATGATGAGCGCGAGAACCTGATT
GCAAAGCGGGAATCAAGCCATGAGTACGATGCAAGCTTTCTAGACCAT
BO12850.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-RA | 2217 | CG12121-PA | 1..2214 | 17..2230 | 11070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-RA | 2954 | CG12121-RA | 266..2479 | 17..2230 | 11070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9230697..9231558 | 1246..385 | 4310 | 100 | Minus |
| X | 23542271 | X | 9229271..9229858 | 2230..1643 | 2940 | 100 | Minus |
| X | 23542271 | X | 9230177..9230450 | 1647..1374 | 1355 | 99.6 | Minus |
| X | 23542271 | X | 9231621..9231767 | 384..238 | 735 | 100 | Minus |
| X | 23542271 | X | 9230507..9230641 | 1378..1244 | 675 | 100 | Minus |
| X | 23542271 | X | 9231828..9231939 | 238..127 | 560 | 100 | Minus |
| X | 23542271 | X | 9232003..9232113 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:19:47 has no hits.
BO12850.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:05 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 1..2217 | 17..2231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:25 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 261..2474 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:29 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..2479 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:05 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 261..2479 | 17..2236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:02 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..2479 | 17..2232 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:02 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9230508..9230641 | 1244..1377 | 100 | <- | Minus |
| X | 9229269..9229855 | 1646..2232 | 99 | <- | Minus |
| X | 9230179..9230446 | 1378..1645 | 100 | <- | Minus |
| X | 9230700..9231558 | 385..1243 | 100 | <- | Minus |
| X | 9231621..9231766 | 239..384 | 100 | <- | Minus |
| X | 9231828..9231938 | 128..238 | 100 | <- | Minus |
| X | 9232003..9232113 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:29 Download gff for
BO12850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9123302..9123888 | 1646..2232 | 99 | <- | Minus |
| arm_X | 9124212..9124479 | 1378..1645 | 100 | <- | Minus |
| arm_X | 9124541..9124674 | 1244..1377 | 100 | <- | Minus |
| arm_X | 9124733..9125591 | 385..1243 | 100 | <- | Minus |
| arm_X | 9125654..9125799 | 239..384 | 100 | <- | Minus |
| arm_X | 9125861..9125971 | 128..238 | 100 | <- | Minus |
| arm_X | 9126036..9126146 | 17..127 | 100 | | Minus |
BO12850.pep Sequence
Translation from 16 to 2248
> BO12850.pep
MWAPGGDVKSIVVLAALTALLWAPLEVLGRKHHLEVRNDRRQYIALSTFG
FYTNGHLDVQLSKLTFDNEQSTDLMGLSLDKTTIDQLNPYLDSHQNKCIL
EESPKSQISGPILFFVLDLKELKVRVKCSPEWHNMHIYNQIPSRTKRHSH
MAKVSDSVLFRQTRAAQDFSAEGPDESMEDPLEQEPTDLKSSSPAAVAGK
IELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDKQELPPPPNA
APKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLAV
NSPAAAPSLDDTEVDKKNEATDTDAAPGNPFPHEGDSEEDSYGPDSFKQS
QENLCKDSTMPLVRETINNVHYYSFNFSMMVATPSDEGLYNLYFHACPNY
HTSKIMSFNVDIEENNNGNYLSAGEMPLPALYFMMSLLFFLSGLFWVFIL
KKSKHTVYKIHYLMAVLVFLKSLSLMFHSINYHFIEKRGEHVETWAILYY
IAHLLKGAVLFITIVLIGTGWTFIKHILSDKDKKIFMIVIPLQVLANVAQ
IITDESDQSDAEFRTWHNIFFFVDLLCCGAILFPIVWSIRHLHEASATDG
KAAINLRKLKLFRQFYIMIVCYIYFTRIIVDLLQMTVVFQYAWLDEMFRE
MATYVFFVLTGYKFRPVSSHPYFTVPDEDEDDDEVEVLTESGLTETVHRV
KQLNRNHGSGLGGITIIEGNDDERENLIAKRESSHEYDASFLDH
BO12850.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-PA | 738 | CG12121-PA | 1..738 | 1..738 | 3863 | 100 | Plus |
