Clone Sequence Records
BO12851.3prime Sequence
841 bp (775 high quality bases) assembled on 2006-05-08
> BO12851.3prime
ATGGTCTAGAAAGCTTGCGCTTATACCTGCCGCCAAATACTGGTTATTGT
AATAATAGGCACATACACCCACTACAATAGAAATTGCTGTTGTCAATATC
ACCGGCTTTGCTGTTAAAATATTTGGAAGCCATTTCGTTATGATAGGAAT
TCTATTCGATGTGGCCGGTTGACGTCTTTTTACGATTAAAGCTTCATCGG
TTTTCCTTTTCCTCCTTTCTTGACAAATAAGTTCTTCAACATCTTTCTCT
ATAAGTGTTAGGCTATATTTATTTAAAAGCGAACTGGATGTTTTCAAAAG
GTCCTCAAATGGTAAATCTTCTGGTATCACTGATAAGAGACAATGCACCG
ATGCCATATCACAGTCCTCCTTTAGAATTTCATCTGATCGATAAAGTAAA
ATCGCTGCTGTTACAAAGATTGATGTATAAATAGGCGATGCAAGGAAATA
GTCATACAAGCGGACTACGGTTCTATAAGATGTTAAACTATGTCCGAACC
AAGTCAAATACCACGGCAAAGAGAACAAAGTTCCCACAGTCGAGTTTTGC
AAGAACTGATAAAGTTCTGGGTTTTCAAACTTAATGATAGGCCAAATAAA
CATAAGTCGCCTTTGCGTGGCCTCCATAGTCTCCTGCATACATTCAGAAA
AATGTGTTGTAGAGAGCTGTTCCATTATTGCAAATGCGATTTCTTCGCCA
ACCACTAACAGAAATGTTACAGCCACGTCATGGTAGCCTTGATAATACCT
CAAGTTAGGATACTTTTGAATTACTCGCAAAATCAGAACAGTAAGTTGGT
CTTGCAGTGCAATTCGTTGCTCGTACGGAATTCCTGGTGGA
BO12851.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-PA | 1137 | CG17883-RA | 312..1134 | 841..19 | 4115 | 100 | Minus |
CG17883-PB | 849 | CG17883-RB | 312..825 | 841..328 | 2570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1625 | CG17883-RA | 639..1461 | 841..19 | 4115 | 100 | Minus |
CG17883-RC | 1619 | CG17883-RC | 639..1455 | 841..19 | 4005 | 99.3 | Minus |
CG17883-RD | 1604 | CG17883-RD | 639..1440 | 841..19 | 3790 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4672549..4673062 | 841..328 | 2570 | 100 | Minus |
2R | 25286936 | 2R | 4673277..4673475 | 217..19 | 995 | 100 | Minus |
2R | 25286936 | 2R | 4673113..4673223 | 328..218 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:39:31 has no hits.
BO12851.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:01 Download gff for
BO12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-PA | 313..1137 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:37 Download gff for
BO12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 640..1461 | 19..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:50 Download gff for
BO12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 640..1461 | 19..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:50 Download gff for
BO12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4672550..4673062 | 328..840 | 100 | -> | Minus |
2R | 4673114..4673223 | 218..327 | 100 | -> | Minus |
2R | 4673277..4673475 | 19..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:37 Download gff for
BO12851.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 560055..560567 | 328..840 | 100 | -> | Minus |
arm_2R | 560619..560728 | 218..327 | 100 | -> | Minus |
arm_2R | 560782..560980 | 19..217 | 100 | | Minus |
BO12851.5prime Sequence
933 bp (784 high quality bases) assembled on 2006-05-08
> BO12851.5prime
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAACCC
AGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCTT
TGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAACC
GTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAAT
CTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATTCTAAAGG
AGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGATACCAGAA
GATTTACCATTTGAGGACCTTTTGAAAACTCCAGTTCGCTTTTAAATAAT
ATAGCCTAACACTTATAGAAAAAGATGTTGAAA
BO12851.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-PA | 1137 | CG17883-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
CG17883-PB | 849 | CG17883-RB | 1..825 | 17..841 | 4125 | 100 | Plus |
CG17883-PA | 1137 | CG17883-RA | 884..918 | 898..932 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1625 | CG17883-RA | 328..1245 | 17..932 | 4525 | 99.7 | Plus |
CG17883-RC | 1619 | CG17883-RC | 328..1242 | 17..932 | 4470 | 99.3 | Plus |
CG17883-RD | 1604 | CG17883-RD | 328..1224 | 17..932 | 4200 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4672278..4673062 | 57..841 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 4673113..4673206 | 841..932 | 355 | 96.8 | Plus |
2R | 25286936 | 2R | 4672180..4672221 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:19:59 has no hits.
BO12851.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:02 Download gff for
BO12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-PA | 1..916 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:14 Download gff for
BO12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 322..1243 | 10..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:19 Download gff for
BO12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 322..1243 | 10..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:19 Download gff for
BO12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4672174..4672219 | 10..56 | 93 | -> | Plus |
2R | 4672278..4673062 | 57..841 | 100 | -> | Plus |
2R | 4673114..4673204 | 842..930 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:14 Download gff for
BO12851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 559679..559724 | 10..56 | 93 | -> | Plus |
arm_2R | 559783..560567 | 57..841 | 100 | -> | Plus |
arm_2R | 560619..560709 | 842..930 | 96 | | Plus |
BO12851.complete Sequence
1168 bp assembled on 2006-10-11
GenBank Submission: FJ638709
> BO12851.complete
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAACCC
AGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCTT
TGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAACC
GTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAAT
CTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATTCTAAAGG
AGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGATACCAGAA
GATTTACCATTTGAGGACCTTTTGAAAACATCCAGTTCGCTTTTAAATAA
ATATAGCCTAACACTTATAGAGAAAGATGTTGAAGAACTTATTTGTCAAG
AAAGGAGGAAAAGGAAAACCGATGAAGCTTTAATCGTAAAAAGACGTCAA
CCGGCCACATCGAATAGAATTCCTATCATAACGAAATGGCTTCCAAATAT
TTTAACAGCAAAGCCGGTGATATTGACAACAGCAATTTCTATTGTAGTGG
GTGTATGTGCCTATTATTACAATAACCAGTATTTGGCGGCAGGTATAAGC
GCAAGCTTTCTAGACCAT
BO12851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1137 | CG17883-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
CG17883-RC | 1131 | CG17883-PC | 1..1128 | 17..1150 | 5510 | 99.5 | Plus |
CG17883-RD | 1116 | CG17883-PD | 1..1113 | 17..1150 | 5320 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-RA | 1625 | CG17883-RA | 328..1461 | 17..1150 | 5670 | 100 | Plus |
CG17883-RC | 1619 | CG17883-RC | 328..1455 | 17..1150 | 5510 | 99.5 | Plus |
CG17883-RD | 1604 | CG17883-RD | 328..1440 | 17..1150 | 5320 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4672278..4673062 | 57..841 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 4673277..4673475 | 952..1150 | 995 | 100 | Plus |
2R | 25286936 | 2R | 4673113..4673223 | 841..951 | 555 | 100 | Plus |
2R | 25286936 | 2R | 4672180..4672221 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:20:57 has no hits.
BO12851.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:56 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 1..1137 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:25 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 318..1457 | 10..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:44 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 328..1461 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:57 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 318..1457 | 10..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:47 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17883-RA | 328..1461 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:47 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4672180..4672219 | 17..56 | 100 | -> | Plus |
2R | 4672278..4673062 | 57..841 | 100 | -> | Plus |
2R | 4673114..4673223 | 842..951 | 100 | -> | Plus |
2R | 4673277..4673475 | 952..1152 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:44 Download gff for
BO12851.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 559685..559724 | 17..56 | 100 | -> | Plus |
arm_2R | 559783..560567 | 57..841 | 100 | -> | Plus |
arm_2R | 560619..560728 | 842..951 | 100 | -> | Plus |
arm_2R | 560782..560980 | 952..1152 | 99 | | Plus |
BO12851.pep Sequence
Translation from 16 to 1168
> BO12851.pep
MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA
PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS
LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV
VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF
LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA
ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL
IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP
VILTTAISIVVGVCAYYYNNQYLAAGISASFLDH
BO12851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17883-PA | 378 | CG17883-PA | 1..378 | 1..378 | 1959 | 100 | Plus |
CG17883-PC | 376 | CG17883-PC | 1..376 | 1..378 | 1926 | 99.5 | Plus |
CG17883-PD | 371 | CG17883-PD | 1..371 | 1..378 | 1904 | 98.1 | Plus |
CG17883-PB | 282 | CG17883-PB | 1..282 | 1..282 | 1447 | 97.9 | Plus |