Clone BO12851 Report

Search the DGRC for BO12851

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG17883-RA
Protein status:BO12851.pep:
Sequenced Size:1168

Clone Sequence Records

BO12851.3prime Sequence

841 bp (775 high quality bases) assembled on 2006-05-08

> BO12851.3prime
ATGGTCTAGAAAGCTTGCGCTTATACCTGCCGCCAAATACTGGTTATTGT
AATAATAGGCACATACACCCACTACAATAGAAATTGCTGTTGTCAATATC
ACCGGCTTTGCTGTTAAAATATTTGGAAGCCATTTCGTTATGATAGGAAT
TCTATTCGATGTGGCCGGTTGACGTCTTTTTACGATTAAAGCTTCATCGG
TTTTCCTTTTCCTCCTTTCTTGACAAATAAGTTCTTCAACATCTTTCTCT
ATAAGTGTTAGGCTATATTTATTTAAAAGCGAACTGGATGTTTTCAAAAG
GTCCTCAAATGGTAAATCTTCTGGTATCACTGATAAGAGACAATGCACCG
ATGCCATATCACAGTCCTCCTTTAGAATTTCATCTGATCGATAAAGTAAA
ATCGCTGCTGTTACAAAGATTGATGTATAAATAGGCGATGCAAGGAAATA
GTCATACAAGCGGACTACGGTTCTATAAGATGTTAAACTATGTCCGAACC
AAGTCAAATACCACGGCAAAGAGAACAAAGTTCCCACAGTCGAGTTTTGC
AAGAACTGATAAAGTTCTGGGTTTTCAAACTTAATGATAGGCCAAATAAA
CATAAGTCGCCTTTGCGTGGCCTCCATAGTCTCCTGCATACATTCAGAAA
AATGTGTTGTAGAGAGCTGTTCCATTATTGCAAATGCGATTTCTTCGCCA
ACCACTAACAGAAATGTTACAGCCACGTCATGGTAGCCTTGATAATACCT
CAAGTTAGGATACTTTTGAATTACTCGCAAAATCAGAACAGTAAGTTGGT
CTTGCAGTGCAATTCGTTGCTCGTACGGAATTCCTGGTGGA

BO12851.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 1137 CG17883-RA 312..1134 841..19 4115 100 Minus
CG17883-PB 849 CG17883-RB 312..825 841..328 2570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1625 CG17883-RA 639..1461 841..19 4115 100 Minus
CG17883-RC 1619 CG17883-RC 639..1455 841..19 4005 99.3 Minus
CG17883-RD 1604 CG17883-RD 639..1440 841..19 3790 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672549..4673062 841..328 2570 100 Minus
2R 25286936 2R 4673277..4673475 217..19 995 100 Minus
2R 25286936 2R 4673113..4673223 328..218 555 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:39:31 has no hits.

BO12851.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:01 Download gff for BO12851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-PA 313..1137 16..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:37 Download gff for BO12851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 640..1461 19..840 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:50 Download gff for BO12851.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 640..1461 19..840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:50 Download gff for BO12851.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4672550..4673062 328..840 100 -> Minus
2R 4673114..4673223 218..327 100 -> Minus
2R 4673277..4673475 19..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:37 Download gff for BO12851.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 560055..560567 328..840 100 -> Minus
arm_2R 560619..560728 218..327 100 -> Minus
arm_2R 560782..560980 19..217 100   Minus

BO12851.5prime Sequence

933 bp (784 high quality bases) assembled on 2006-05-08

> BO12851.5prime
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAACCC
AGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCTT
TGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAACC
GTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAAT
CTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATTCTAAAGG
AGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGATACCAGAA
GATTTACCATTTGAGGACCTTTTGAAAACTCCAGTTCGCTTTTAAATAAT
ATAGCCTAACACTTATAGAAAAAGATGTTGAAA

BO12851.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 1137 CG17883-RA 1..863 17..879 4315 100 Plus
CG17883-PB 849 CG17883-RB 1..825 17..841 4125 100 Plus
CG17883-PA 1137 CG17883-RA 884..918 898..932 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1625 CG17883-RA 328..1245 17..932 4525 99.7 Plus
CG17883-RC 1619 CG17883-RC 328..1242 17..932 4470 99.3 Plus
CG17883-RD 1604 CG17883-RD 328..1224 17..932 4200 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672278..4673062 57..841 3925 100 Plus
2R 25286936 2R 4673113..4673206 841..932 355 96.8 Plus
2R 25286936 2R 4672180..4672221 17..58 210 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:19:59 has no hits.

BO12851.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:02 Download gff for BO12851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-PA 1..916 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:14 Download gff for BO12851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 322..1243 10..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:19 Download gff for BO12851.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 322..1243 10..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:19 Download gff for BO12851.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4672174..4672219 10..56 93 -> Plus
2R 4672278..4673062 57..841 100 -> Plus
2R 4673114..4673204 842..930 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:14 Download gff for BO12851.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 559679..559724 10..56 93 -> Plus
arm_2R 559783..560567 57..841 100 -> Plus
arm_2R 560619..560709 842..930 96   Plus

BO12851.complete Sequence

1168 bp assembled on 2006-10-11

GenBank Submission: FJ638709

> BO12851.complete
GAAGTTATCAGTCGACATGATCAAAAATGAACAACGTCCCCTTAATTTTG
AAAAATGTCCGGAATCTGATGATGAGCTCAAGAAACGGTTGGAGATAGAA
AAATTAATTAATAAAAACATCGACAAAAATATTAGTTTTGATGTACTTGT
GAAGTTATCCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGA
TTTTATGGCCTCAGTTGGCAGGAGTCGACATTAACCATTTAGGACAAGCT
CCAACGCTCGATAAGTTCCAGTGCCATCCAGAATACAATCAAGTGGTGTT
AGATGTTAATCGTTCTTTAAAACGATTTCCACCAGGAATTCCGTACGAGC
AACGAATTGCACTGCAAGACCAACTTACTGTTCTGATTTTGCGAGTAATT
CAAAAGTATCCTAACTTGAGGTATTATCAAGGCTACCATGACGTGGCTGT
AACATTTCTGTTAGTGGTTGGCGAAGAAATCGCATTTGCAATAATGGAAC
AGCTCTCTACAACACATTTTTCTGAATGTATGCAGGAGACTATGGAGGCC
ACGCAAAGGCGACTTATGTTTATTTGGCCTATCATTAAGTTTGAAAACCC
AGAACTTTATCAGTTCTTGCAAAACTCGACTGTGGGAACTTTGTTCTCTT
TGCCGTGGTATTTGACTTGGTTCGGACATAGTTTAACATCTTATAGAACC
GTAGTCCGCTTGTATGACTATTTCCTTGCATCGCCTATTTATACATCAAT
CTTTGTAACAGCAGCGATTTTACTTTATCGATCAGATGAAATTCTAAAGG
AGGACTGTGATATGGCATCGGTGCATTGTCTCTTATCAGTGATACCAGAA
GATTTACCATTTGAGGACCTTTTGAAAACATCCAGTTCGCTTTTAAATAA
ATATAGCCTAACACTTATAGAGAAAGATGTTGAAGAACTTATTTGTCAAG
AAAGGAGGAAAAGGAAAACCGATGAAGCTTTAATCGTAAAAAGACGTCAA
CCGGCCACATCGAATAGAATTCCTATCATAACGAAATGGCTTCCAAATAT
TTTAACAGCAAAGCCGGTGATATTGACAACAGCAATTTCTATTGTAGTGG
GTGTATGTGCCTATTATTACAATAACCAGTATTTGGCGGCAGGTATAAGC
GCAAGCTTTCTAGACCAT

BO12851.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1137 CG17883-PA 1..1134 17..1150 5670 100 Plus
CG17883-RC 1131 CG17883-PC 1..1128 17..1150 5510 99.5 Plus
CG17883-RD 1116 CG17883-PD 1..1113 17..1150 5320 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-RA 1625 CG17883-RA 328..1461 17..1150 5670 100 Plus
CG17883-RC 1619 CG17883-RC 328..1455 17..1150 5510 99.5 Plus
CG17883-RD 1604 CG17883-RD 328..1440 17..1150 5320 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4672278..4673062 57..841 3925 100 Plus
2R 25286936 2R 4673277..4673475 952..1150 995 100 Plus
2R 25286936 2R 4673113..4673223 841..951 555 100 Plus
2R 25286936 2R 4672180..4672221 17..58 210 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:20:57 has no hits.

BO12851.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:56 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 1..1137 17..1153 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:25 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 318..1457 10..1150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:44 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 328..1461 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:57 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 318..1457 10..1150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:47 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
CG17883-RA 328..1461 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:47 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4672180..4672219 17..56 100 -> Plus
2R 4672278..4673062 57..841 100 -> Plus
2R 4673114..4673223 842..951 100 -> Plus
2R 4673277..4673475 952..1152 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:44 Download gff for BO12851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 559685..559724 17..56 100 -> Plus
arm_2R 559783..560567 57..841 100 -> Plus
arm_2R 560619..560728 842..951 100 -> Plus
arm_2R 560782..560980 952..1152 99   Plus

BO12851.pep Sequence

Translation from 16 to 1168

> BO12851.pep
MIKNEQRPLNFEKCPESDDELKKRLEIEKLINKNIDKNISFDVLVKLSLA
PYGLVNDDFRRILWPQLAGVDINHLGQAPTLDKFQCHPEYNQVVLDVNRS
LKRFPPGIPYEQRIALQDQLTVLILRVIQKYPNLRYYQGYHDVAVTFLLV
VGEEIAFAIMEQLSTTHFSECMQETMEATQRRLMFIWPIIKFENPELYQF
LQNSTVGTLFSLPWYLTWFGHSLTSYRTVVRLYDYFLASPIYTSIFVTAA
ILLYRSDEILKEDCDMASVHCLLSVIPEDLPFEDLLKTSSSLLNKYSLTL
IEKDVEELICQERRKRKTDEALIVKRRQPATSNRIPIITKWLPNILTAKP
VILTTAISIVVGVCAYYYNNQYLAAGISASFLDH

BO12851.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17883-PA 378 CG17883-PA 1..378 1..378 1959 100 Plus
CG17883-PC 376 CG17883-PC 1..376 1..378 1926 99.5 Plus
CG17883-PD 371 CG17883-PD 1..371 1..378 1904 98.1 Plus
CG17883-PB 282 CG17883-PB 1..282 1..282 1447 97.9 Plus