Clone Sequence Records
BO12852.complete Sequence
2008 bp assembled on 2010-04-13
GenBank Submission: KX794493
> BO12852.complete
GAAGTTATCAGTCGACATGCACAAGGAAAAAATTATTAATTCACAAAATG
CTAGCAAAATAAACCAAAAAGATCATAAACCCAATGGAAATACAAATGAA
AGTAGACATAAAACAGTGAGTTTAATAAACAAAAAAGATGACAAAGAATA
CGACCTTGTCCCACCTGATGGTGGTTGGGGTTGGTTAGTGCTGCTGGGCT
CGTGCTTGACTAACATTTTAATCCCTGGCACAATAAAAAGTTTTGGAGTA
TTATTTTCGGAGTTCACCGATGCATTCAACTCTTCTCCTACGAAGGCTGC
CTGGATACCAGCCCTGTGTTATTTTCTTTATAGTTCATTGGGCCCGGTTT
CAAGCATTCTATCTGTGAAGTACTCATATCGTACTGTCACCCTTCTTGGT
GGGGCATCTGCGTCACTGGGTATGATACTCTCCTTCTGGGCATCATCTAT
TGAGTTCTTGTATATCAGCTATGGCGTTTTGGTCGGAATCGGGGCTGGTC
TCTCTTTCCCCCCCACAGTTTACATTGTGACGTCGTATTTTGCGAAACTA
CGCGGATTAGCGAATGGCCTCTGCATTTCCGGTAGTGCTTTAGGCAGCAT
AATTTTGCCGCCCCTTCTTCGTTGGCTACTAGAGACCTATGGCTATCACG
GCTCCTGCCTAATTATGGGTGGCATTACTTTGAACGTATTTGTCGCTGCT
CTTTTCTATGAGCCTGTTGAACAACATATGGTACGAGTACCTCGTGCTCG
CCAGGCTTTGGAAAATATTCCAGAAGAGGAGGATATTGGAATCGTAATGA
AGTTCGAAAATGTTGACGAGCCGGTTCCCAAAAATGAGCCGGCTGACAAG
CCATTGTTACCATATAATTCGCCTCCTTCTCCTCTGTATTTACCTGGCGA
TGAGAGGCTGCAGTTTGTGCGTAGCGCATCCGCAGCTGTTGTCCAAAGCT
ACTCAAAGTCTGGAGACGAGTTTCAGTCTCGATCGCGTAAGATCAGTACG
CCGGTGAGGTTACCCCAGAGAAATCAGACTTTTACGCCTGGCCAACTTAA
CTCGCAATCATCATTGTACGCTGTGCCAGAGGGGCGATCAAGCTCCAACA
AACTGACTCTGCGAAATTCGTCAAAGTCACGGTTATCCAAGCGCTCGCCT
TCAACAAGCAGTTTTTTATACGTCAGCACACCATATCATGGCAGCACATT
GTCGTTTCAACCGAAAGAATTTTCCTCGCATTTGTCCCTTCGCTCTATGG
GGAGTAGTGGAACGGGACATGCAGGCGACTCAACCGGGCAAGATGGATCT
TATGCCGACGTCGACGCCCGAGGCCAGGCACAACAGCCGCAACGATCGAA
GTTTTTTGATCTAAGCCTTTTAAAAGACCCTATGTACTTGGTCATACTAA
TTTCGAATTCGACGAATGCCATAAGCTACACGAACTTTATTATATTGCTG
CCCAGTTTTGGAGAAGCCAGGGGCTTTAACAAATCATTATCTGCATATTT
GCTTTCAGTTGTATCAGCCACGGATCTAATTGGACGTATTGGCGGGTCAG
CACTTTCGGACATGGGGTACATACCTAAGACCTGGTACTTTGTTGGTGGC
TTGTCCATATCGGGGCTTTCTCTTGCCCTTCTGCCTTTTGCATGGACATA
CAGCTCTGTATGTTTTTGGTGTGCACTCTTTGGGTTAGCTTCTGGTATTT
ACGTCGGAATAACTGCAGTAATCATGGCAGACATGCTTGGAACGGAACGC
TTGACATCATCGTATGGCATCAGCCTTTTCGTTAATGGCTTGTTGCAGTT
GGTTGGGCCGCCATTATGTAACTACTGGTTCGAGGCGGTCAATGATTATA
ATCCTCTCTTCCACGCCCTCGGCTTAACGCTCCTGGCTGGAGCTAGCCTT
TGGAGTTTTATGCCATGGATTAACCGACGCAAAGCTAATGCGGAGGAGCA
ACTAGATGCACAAATCGAAAAAGCGGCTGTCGATAGCTACGCAAGCTTTC
TAGACCAT
BO12852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 1977 | CG11665-PB | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| CG11665-RA | 1977 | CG11665-PA | 1..1974 | 17..1990 | 9870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 3393 | CG11665-RB | 320..2294 | 16..1990 | 9875 | 100 | Plus |
| CG11665-RA | 2635 | CG11665-RA | 320..2294 | 16..1990 | 9875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5642014..5643537 | 1990..467 | 7620 | 100 | Minus |
| 2R | 25286936 | 2R | 5643816..5644045 | 342..113 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 5643592..5643719 | 468..341 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 5647722..5647822 | 116..16 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:38 has no hits.
BO12852.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:49 Download gff for
BO12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 289..2262 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:09 Download gff for
BO12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 321..2294 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:19 Download gff for
BO12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 321..2294 | 17..1992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:19 Download gff for
BO12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5642012..5643535 | 469..1992 | 99 | <- | Minus |
| 2R | 5643592..5643718 | 342..468 | 100 | <- | Minus |
| 2R | 5643817..5644041 | 117..341 | 100 | <- | Minus |
| 2R | 5647722..5647821 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:09 Download gff for
BO12852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1529517..1531040 | 469..1992 | 99 | <- | Minus |
| arm_2R | 1531097..1531223 | 342..468 | 100 | <- | Minus |
| arm_2R | 1531322..1531546 | 117..341 | 100 | <- | Minus |
| arm_2R | 1535227..1535326 | 17..116 | 100 | | Minus |
BO12852.3prime Sequence
763 bp (718 high quality bases) assembled on 2006-05-08
> BO12852.3prime
ATGGTCTAGAAAGCTTGCGTAGCTATCGACAGCCGCTTTTTCGATTTGTG
CATCTAGTTGCTCCTCCGCATTAGCTTTGCGTCGGTTAATCCATGGCATA
AAACTCCAAAGGCTAGCTCCAGCCAGGAGCGTTAAGCCGAGGGCGTGGAA
GAGAGGATTATAATCATTGACCGCCTCGAACCAGTAGTTACATAATGGCG
GCCCAACCAACTGCAACAAGCCATTAACGAAAAGGCTGATGCCATACGAT
GATGTCAAGCGTTCCGTTCCAAGCATGTCTGCCATGATTACTGCAGTTAT
TCCGACGTAAATACCAGAAGCTAACCCAAAGAGTGCACACCAAAAACATA
CAGAGCTGTATGTCCATGCAAAAGGCAGAAGGGCAAGAGAAAGCCCCGAT
ATGGACAAGCCACCAACAAAGTACCAGGTCTTAGGTATGTACCCCATGTC
CGAAAGTGCTGACCCGCCAATACGTCCAATTAGATCCGTGGCTGATACAA
CTGAAAGCAAATATGCAGATAATGATTTGTTAAAGCCCCTGGCTTCTCCA
AAACTGGGCAGCAATATAATAAAGTTCGTGTAGCTTATGGCATTCGTCGA
ATTCGAAATTAGTATGACCAAGTACATAGGGTCTTTTAAAAGGCTTAGAT
CAAAAAACTTCGATCGTTGCGGCTGTTGTGCCTGGCCTCGGGCGTCGACG
TCGGCATAAGATCCATCTTGCCCGGTTTGAGTCGCCTGCATGTCCCGTTC
CACTACTCCCCAT
BO12852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-PA | 1977 | CG11665-RA | 1266..1974 | 727..19 | 3545 | 100 | Minus |
| CG11665-PA | 1977 | CG11665-RA | 1231..1267 | 763..727 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 3393 | CG11665-RB | 1551..2294 | 763..19 | 3700 | 99.9 | Minus |
| CG11665-RA | 2635 | CG11665-RA | 1551..2294 | 763..19 | 3700 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5642014..5642757 | 19..763 | 3675 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:01:06 has no hits.
BO12852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:46 Download gff for
BO12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-PA | 1231..1977 | 15..763 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:41 Download gff for
BO12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-PA | 1231..1977 | 15..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:14 Download gff for
BO12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 1551..2297 | 15..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:27 Download gff for
BO12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 1551..2297 | 15..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:27 Download gff for
BO12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5642010..5642757 | 15..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:14 Download gff for
BO12852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1529515..1530262 | 15..763 | 99 | | Plus |
BO12852.5prime Sequence
859 bp (759 high quality bases) assembled on 2006-05-08
> BO12852.5prime
GAAGTTATCAGTCGACATGCACAAGGAAAAAATTATTAATTCACAAAATG
CTAGCAAAATAAACCAAAAAGATCATAAACCCAATGGAAATACAAATGAA
AGTAGACATAAAACAGTGAGTTTAATAAACAAAAAAGATGACAAAGAATA
CGACCTTGTCCCACCTGATGGTGGTTGGGGTTGGTTAGTGCTGCTGGGCT
CGTGCTTGACTAACATTTTAATCCCTGGCACAATAAAAAGTTTTGGAGTA
TTATTTTCGGAGTTCACCGATGCATTCAACTCTTCTCCTACGAAGGCTGC
CTGGATACCAGCCCTGTGTTATTTTCTTTATAGTTCATTGGGCCCGGTTT
CAAGCATTCTATCTGTGAAGTACTCATATCGTACTGTCACCCTTCTTGGT
GGGGCATCTGCGTCACTGGGTATGATACTCTCCTTCTGGGCATCATCTAT
TGAGTTCTTGTATATCAGCTATGGCGTTTTGGTCGGAATCGGGGCTGGTC
TCTCTTTCCCCCCCACAGTTTACATTGTGACGTCGTATTTTGCGAAACTA
CGCGGATTAGCGAATGGCCTCTGCATTTCCGGTAGTGCTTTAGGCAGCAT
AATTTTGCCGCCCCTTCTTCGTTGGCTACTAGAGACCTATGGCTATCACG
GCTCCTGCCTAATTATGGGTGGCATTACTTTGAACGTATTTGTCGCTGCT
CTTTTCTATGAGCCTGTTGAACAACATATGGTACGAGTACCTCGTGCTCG
CCAGGCTTTGGAAAATATTCCAGAAGAGGAGGATATTGGAATCGTAATGA
AGTTCGAAAATGCTGACGAGCCGGTTCCCAAAAATGAGGCGGCTGACAAG
CCCTTGTTA
BO12852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-PA | 1977 | CG11665-RA | 1..843 | 17..859 | 4140 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-RB | 3393 | CG11665-RB | 320..1163 | 16..859 | 4175 | 99.6 | Plus |
| CG11665-RA | 2635 | CG11665-RA | 320..1163 | 16..859 | 4175 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5643145..5643537 | 859..467 | 1920 | 99.2 | Minus |
| 2R | 25286936 | 2R | 5643816..5644045 | 342..113 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 5643592..5643719 | 468..341 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 5647722..5647822 | 116..16 | 505 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1228..1333 | 21..122 | 124 | 60.4 | Plus |
BO12852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:47 Download gff for
BO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:42 Download gff for
BO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:22 Download gff for
BO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 316..1162 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:04:48 Download gff for
BO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11665-RA | 316..1162 | 10..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:04:48 Download gff for
BO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5643146..5643535 | 469..858 | 99 | <- | Minus |
| 2R | 5643592..5643718 | 342..468 | 100 | <- | Minus |
| 2R | 5643817..5644041 | 117..341 | 100 | <- | Minus |
| 2R | 5647722..5647830 | 5..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:22 Download gff for
BO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1530651..1531040 | 469..858 | 99 | <- | Minus |
| arm_2R | 1531097..1531223 | 342..468 | 100 | <- | Minus |
| arm_2R | 1531322..1531546 | 117..341 | 100 | <- | Minus |
| arm_2R | 1535227..1535335 | 5..116 | 96 | | Minus |
BO12852.pep Sequence
Translation from 16 to 2008
> BO12852.pep
MHKEKIINSQNASKINQKDHKPNGNTNESRHKTVSLINKKDDKEYDLVPP
DGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPAL
CYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYI
SYGVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPL
LRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRVPRARQALEN
IPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQF
VRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSL
YAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPK
EFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDARGQAQQPQRSKFFDLS
LLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVS
ATDLIGRIGGSALSDMGYIPKTWYFVGGLSISGLSLALLPFAWTYSSVCF
WCALFGLASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPL
CNYWFEAVNDYNPLFHALGLTLLAGASLWSFMPWINRRKANAEEQLDAQI
EKAAVDSYASFLDH
BO12852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11665-PB | 658 | CG11665-PB | 1..658 | 1..658 | 3400 | 100 | Plus |
| CG11665-PA | 658 | CG11665-PA | 1..658 | 1..658 | 3400 | 100 | Plus |
| Sln-PA | 855 | CG8271-PA | 225..842 | 49..638 | 651 | 30.2 | Plus |
| Mct1-PB | 626 | CG3456-PB | 21..616 | 42..645 | 647 | 28.1 | Plus |
| Mct1-PA | 626 | CG3456-PA | 21..616 | 42..645 | 647 | 28.1 | Plus |
