Clone Sequence Records
BO12853.3prime Sequence
773 bp (723 high quality bases) assembled on 2006-05-08
> BO12853.3prime
ATGGTCTAGAAAGCTTGCGAGCCCTGCCAAAACGGCATCGATCCAAGGCC
TCAGGTACGCCACATTGGCATAGACGCCGGGATAATTGGGCAGTGCACAA
CTGTTGCCCCAGGACACGACTCCATAGAGTTCATCGCGCACCGCCAACGG
TCCTCCGGAATCTCCCTGGCAGGCATCCGCACCACCGACACCCCGTTTGC
CGGCACACAACATGGCCGATGTAATGCGGTAGGTCTCGTCGCCAAAATCC
TCGTAGTCCTGATCACAAAGCTCGTTGCTCACAATCGGGACATCGACCGC
GAGCAGTTGGTTCGAGGAGTAGCCGCCGGGAGAAGTGGTTCCCCATCCGC
TGACCTTGCTGACCGTTCCCTCAATTGGTTGTTCCAAGGCCAGCTTAATG
GCCTTGATGGTGAAGTTGTTGAGCGGCAATGGGGGATCCACAAATAGAAT
GGCAATATCGTTGTTGTAGGCAGCTCCCGAGTAATACCCTTCGTGCATAA
CGATCTCCTTGACATTGGTGATAACGCCATCGGAGCCGGTTTGGAAATTT
GTCCCGGCCACCACTTTATATTGACTTGCCACCGTGCCGATGACGCAGTG
CGCCGCTGTCACTATTGTAGTCTCATTGAAAATGGATCCTCCGCAACGAT
GGCGAAAGGGATTCTCCGGCGTGGTGATACCCTTGTAGCGCAGGAAAATC
TGGTACGGGACCTGCGCTATGTCCGTCGCATAGCCACCCACAATGCGGCC
ATCCGGAACGCTCTTCTCATCCA
BO12853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12387-PA | 843 | zetaTry-RA | 86..840 | 773..19 | 3750 | 99.8 | Minus |
| CG12386-PA | 789 | etaTry-RA | 624..653 | 178..149 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 947 | CG12387-RA | 119..873 | 773..19 | 3760 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11339260..11340014 | 19..773 | 3760 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:09:59 has no hits.
BO12853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:48 Download gff for
BO12853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12387-PA | 87..843 | 15..772 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:44 Download gff for
BO12853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12387-PA | 87..843 | 15..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:24 Download gff for
BO12853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 120..879 | 11..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:38 Download gff for
BO12853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 120..879 | 11..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:38 Download gff for
BO12853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11339254..11340013 | 11..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:24 Download gff for
BO12853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7226759..7227518 | 11..772 | 99 | | Plus |
BO12853.5prime Sequence
818 bp (786 high quality bases) assembled on 2006-05-08
> BO12853.5prime
GAAGTTATCAGTCGACATGTCGAGCTCTTGGATAGTTGGCCTCTTGGCCT
TTCTCGTCAGCTTGGTGGCCTTGACCCAAGGTCTTCCCCTTCTGGAGGAT
CTGGATGAGAAGAGCGTTCCGGATGGCCGCATTGTGGGTGGCTATGCGAC
GGACATAGCGCAGGTCCCGTACCAGATTTCCCTGCGCTACAAGGGTATCA
CCACGCCGGAGAATCCCTTTCGCCATCGTTGCGGAGGATCCATTTTCAAT
GAGACTACAATAGTGACAGCGGCGCACTGCGTCATCGGCACGGTGGCAAG
TCAATATAAAGTGGTGGCCGGGACAAATTTCCAAACCGGCTCCGATGGCG
TTATCACCAATGTCAAGGAGATCGTTATGCACGAAGGGTATTACTCGGGA
GCTGCCTACAACAACGATATTGCCATTCTATTTGTGGATCCCCCATTGCC
GCTCAACAACTTCACCATCAAGGCCATTAAGCTGGCCTTGGAACAACCAA
TTGAGGGAACGGTCAGCAAGGTCAGCGGATGGGGAACCACTTCTCCCGGC
GGCTACTCCTCGAACCAACTGCTCGCGGTCGATGTCCCGATTGTGAGCAA
CGAGCTTTGTGATCAGGACTACGAGGATTTTGGCGACGAGACCTACCGCA
TTACATCGGCCATGTTGTGTGCCGGCAAACGGGGTGTCGGTGGTGCGGAT
GCCTGCCAGGGAGATTCCGGAGGACCGTTGGCGGTGCGCGATGAACTCTA
TGGAGTCGTGTCCTGGGGCAACAGTTGTGCACTGCCCAATTATCCCGGCG
TCCATGCCAATGTGGCGT
BO12853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12387-PA | 843 | zetaTry-RA | 1..802 | 17..818 | 3985 | 99.8 | Plus |
| CG12386-PA | 789 | etaTry-RA | 624..653 | 697..726 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 947 | CG12387-RA | 33..835 | 16..818 | 4000 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11339298..11340100 | 818..16 | 4000 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:01:27 has no hits.
BO12853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:49 Download gff for
BO12853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12387-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:45 Download gff for
BO12853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12387-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:19 Download gff for
BO12853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 33..835 | 16..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:36:15 Download gff for
BO12853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 33..835 | 16..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:36:15 Download gff for
BO12853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11339298..11340100 | 16..818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:19 Download gff for
BO12853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7226803..7227605 | 16..818 | 99 | | Minus |
BO12853.complete Sequence
874 bp assembled on 2006-10-11
GenBank Submission: FJ632606
> BO12853.complete
GAAGTTATCAGTCGACATGTCGAGCTCTTGGATAGTTGGCCTCTTGGCCT
TTCTCGTCAGCTTGGTGGCCTTGACCCAAGGTCTTCCCCTTCTGGAGGAT
CTGGATGAGAAGAGCGTTCCGGATGGCCGCATTGTGGGTGGCTATGCGAC
GGACATAGCGCAGGTCCCGTACCAGATTTCCCTGCGCTACAAGGGTATCA
CCACGCCGGAGAATCCCTTTCGCCATCGTTGCGGAGGATCCATTTTCAAT
GAGACTACAATAGTGACAGCGGCGCACTGCGTCATCGGCACGGTGGCAAG
TCAATATAAAGTGGTGGCCGGGACAAATTTCCAAACCGGCTCCGATGGCG
TTATCACCAATGTCAAGGAGATCGTTATGCACGAAGGGTATTACTCGGGA
GCTGCCTACAACAACGATATTGCCATTCTATTTGTGGATCCCCCATTGCC
GCTCAACAACTTCACCATCAAGGCCATTAAGCTGGCCTTGGAACAACCAA
TTGAGGGAACGGTCAGCAAGGTCAGCGGATGGGGAACCACTTCTCCCGGC
GGCTACTCCTCGAACCAACTGCTCGCGGTCGATGTCCCGATTGTGAGCAA
CGAGCTTTGTGATCAGGACTACGAGGATTTTGGCGACGAGACCTACCGCA
TTACATCGGCCATGTTGTGTGCCGGCAAACGGGGTGTCGGTGGTGCGGAT
GCCTGCCAGGGAGATTCCGGAGGACCGTTGGCGGTGCGCGATGAACTCTA
TGGAGTCGTGTCCTGGGGCAACAGTTGTGCACTGCCCAATTATCCCGGCG
TCTATGCCAATGTGGCGTACCTGAGGCCTTGGATCGATGCCGTTTTGGCA
GGGCTCGCAAGCTTTCTAGACCAT
BO12853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 843 | CG12387-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 947 | CG12387-RA | 33..873 | 16..856 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11339260..11340100 | 856..16 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:50:48 has no hits.
BO12853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:40 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:58 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 29..875 | 16..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:37 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 34..873 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:41 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 29..875 | 16..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:55 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 34..873 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:55 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11339258..11340099 | 17..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:37 Download gff for
BO12853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7226763..7227604 | 17..858 | 99 | | Minus |
BO12853.pep Sequence
Translation from 16 to 874
> BO12853.pep
MSSSWIVGLLAFLVSLVALTQGLPLLEDLDEKSVPDGRIVGGYATDIAQV
PYQISLRYKGITTPENPFRHRCGGSIFNETTIVTAAHCVIGTVASQYKVV
AGTNFQTGSDGVITNVKEIVMHEGYYSGAAYNNDIAILFVDPPLPLNNFT
IKAIKLALEQPIEGTVSKVSGWGTTSPGGYSSNQLLAVDVPIVSNELCDQ
DYEDFGDETYRITSAMLCAGKRGVGGADACQGDSGGPLAVRDELYGVVSW
GNSCALPNYPGVYANVAYLRPWIDAVLAGLASFLDH
BO12853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-PA | 280 | CG12387-PA | 1..280 | 1..280 | 1468 | 100 | Plus |
| etaTry-PA | 262 | CG12386-PA | 25..254 | 36..273 | 549 | 48.3 | Plus |
| betaTry-PB | 253 | CG18211-PB | 1..249 | 9..273 | 471 | 44.4 | Plus |
| betaTry-PA | 253 | CG18211-PA | 1..249 | 9..273 | 471 | 44.4 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 7..249 | 13..273 | 463 | 45.4 | Plus |
