Clone BO12854 Report

Search the DGRC for BO12854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptpigs-RA
Protein status:BO12854.pep: Imported from assembly
Sequenced Size:2965

Clone Sequence Records

BO12854.complete Sequence

2965 bp assembled on 2010-04-13

GenBank Submission: KX796717

> BO12854.complete
GAAGTTATCAGTCGACATGGCCATGTTAGAGGCGCGGCCATATAGGCCAT
TTAAATCCAGTGAGGAATATCTGGAGGCCATGAGGGAGGATTTGGCCGAG
TGGCTAAGCACACTCTATCCAGAGCTGAGCATCAATGCCGATAACTTTAT
GGATCGTTTGGACACGGGAGTAGCATTGTGCAAGCACGCAAATTATGTGA
GACAGGCGGCTGTGGATTATCTGGCACGGCGACAGGCCCGCAACAAATCG
ATGACCCGCTCGATGACCTCGGGCCTGGCGGGTCCCATTCTGGCCATGGG
CAATGTCCACTACCTTCCGGCAGCCAAGAGTGGCACCTTCTTTGCCCGCG
ACAATGTTTCCAACTTTATAACCTGGTGCAGAAAGAGCCTAAAGATCATC
GAGTGCCTGCTGTTCGAAACGGACGATCTGATCATGCGCAAAAACGAGAA
GCATGTGATCCTGTGCCTTCTGGAGGTGGCACGTCGGGGAGCCAAGTTTG
GAATGTTGGCTCCCATGCTGGTGCAAATGGAGCGACAAATCGATCGGGAG
ATCGCCGCGGACATCAAGGCCAATGGAGCTGGCTGCTCGGAAAATGGCAC
CCAAACGGATGCACTGGAGACCGGAAATAGTAGTGCCGCCACAATGACGA
CAATAACGACGACCACAGTGGAAACGGATCTATATGATGACAGCGACGAT
TCGGAGACCGAGGATGATGGCGACCAGAATCCCGTGCTGATGTACGGACC
ACAGCCCCAGATAATCACCAATGATCTGAAGAGCCTCGACGAAATGGTCA
GAGATCTTGTGGAGAAGTGCACATGCCCCTCACAATTTCCCATGGTCAGA
GTGTCGGAGGGCAAGTATCGTATTGGCGACACCAAAGTTCTCATCTTTGT
GCGGATCCTTCGTTCCCACGTGATGGTGCGCGTCGGTGGCGGATGGGACA
CACTATCCCACTATCTGGACAAGCACGATCCGTGCCGCTGCCGTGCCCAA
CATCGCAGCTCCGTGGCAGCTCGCCTCATTCCCCGTCAGTCGCCGAATCA
CAACCCGAGCAACGGCATCGAGCTCCACAAGGCGCAGGTGATATTCGAGA
GGTCACCTCCAGCAGCTCGACGTGTTTTCAACAGTCCCAATTGCAATGGT
GGACCCGGAACAGGATCATCGTGTGGAACGGGAGTTGTGGGCGTGGCCGT
GCCTCCAACTTTACAGAACGGTCACAGTCTGTCGCCGAATTCGGGAAAAT
ACCGCAGTCGCAGTCCAACACCACAGCGCAAGTTCCTCAACCAGCAGGCC
AACGGAGGAGGCATTGCATCCGCGACGGGATCCAGTCAGACAGTCACCAC
AGACACCTCCAGCGGTCAGCTGCTCGGATCGCCCAGCTTGGCCAGACGCT
CCATGTCACCAAGTCCACGTCGACTAATCGATATGCGCAAGAAACAGAGC
TCCTTGGATTCGTACAGTAGTGGTCCGAAATCGCTGCCCGGCTACAGTTG
CTCCATGGAGGAGGCAAACGGTGGATCTGGTGTCGGATCGGCGGCTGGAG
GTGTCAGCTCAGGATCCGCTGGATCGGGAGTCGCGGGCGAACAGGGTGGC
GCCAACAAATTCGAGAACATCAGCGATAATGGCAGTGAGATCAGTGACGA
AGGATACCGCAGTCTGGGAGTCATCCAATCGGGAGCCCAAAAACGAGAGT
CCCTGCATAGTCAGGCTTCCATTGAGGACGCTGAAAGCAATGCGCGTCTG
GATCAGACTTCAAGTGACTCGCAAATCTCGCCCTCTGATGAGCCGGCGGA
GAAGGCCACCACGGACATTCTAGAAGAGGAGGATCTAAATGGCCAAGATC
GAGAGGAGGACCAAGAGGACTACTCGGTGTGCGATGGCCCACAATCGCTG
CCGGCAATTCTCAGCGGAGCCCATAAGCTAAGCGACAAATTTGAGCAATC
CGGTGTCTTTATAACCGACGACGAAATCACCGTGGACATAGCCAAGACCG
AGGATCAGTCGGTGGCTAACACAATGGGAAATCCAACACCCAATCTCAGC
AAGATTCCACGCTCTCCATTGGCGCAGCGTCGTCGCCGAAGCATCGATAA
TAGTACGTGTGGCGGTGCTGGCGGAAGTCTACAGGATTTGAGCAGCCGGT
CTGGTCTACCGGCTCCAGCTTTTAGCCGCAAACAACCGGTTTATCGATCC
GTTCGAACTCGCAACTCAACCGGAGCCACTACAACGCCGGTGGCACCTCC
CCGATCCCGTCAAGCCACCCAATTGCCTATGGTGCGTGATGTCACGAATA
CGTGGAGCGGCCGAACCACGGGAGCACCAAAGCGAAGACCTCCCTGCACC
GCCGATACCTTTGTGGCACCCACAAATGGAACAGGACCAGCTGGATCCTT
CGAGCGCAATGGCAAAGGACGCTCATCGCAAATTCTCTACGACAGCAACG
GACGCCGGGTGAGGAGCGGTGCACCGGGATGCACCAGTTCGCTAACCACG
TCGCCCGTTAAGAATCACGCCTCCTCGCCACTTGCCCAACAACTCCTGGA
GGCGGCCAGCAGTGCCAAGAACGATGCCCAAATTTTGGAGAAGATGAAGT
CACTACTCTCACGCTATGCGGCTGGTAATCAAACAAAGGCAGGAGTTGGA
GCAACGGCAACAGCAGCGAATAAGATCAACAGCAATGGGAAAAAGACACC
GGTCTACGAGGACTTCACTACGGCCTGGGTGCACAGCAATGGCAATCTGG
AGCGTTCGGAGAGCTGTTCTCCACCAGCCAAGGCGCGTTCCAAGCGCAGT
TCCGCCGCCAGTTCCTGCGAAAGTAACAATTCAAATGCTGGAGCTGGATC
CGGAGCAGCTGCTGGATCGGCCAGCGTGGTATCGCCCAGGCGAGAGAGGG
GCATGTCCAAGATTCCGGCGCCAGTGCGTCATCATACAGAGCTTTACGCA
AGCTTTCTAGACCAT

BO12854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 2934 CG3973-PC 1..2931 17..2947 14625 99.9 Plus
pigs-RB 2934 CG3973-PB 1..2931 17..2947 14625 99.9 Plus
pigs-RA 2934 CG3973-PA 1..2931 17..2947 14625 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 6318 CG3973-RC 783..3713 17..2947 14625 99.9 Plus
pigs-RB 6272 CG3973-RB 737..3667 17..2947 14625 99.9 Plus
pigs-RA 5401 CG3973-RA 783..3713 17..2947 14625 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6649205..6650410 1742..2947 6015 99.9 Plus
X 23542271 X 6648500..6649142 1100..1742 3200 99.8 Plus
X 23542271 X 6645042..6645340 500..798 1495 100 Plus
X 23542271 X 6648184..6648383 904..1103 1000 100 Plus
X 23542271 X 6644560..6644758 183..381 995 100 Plus
X 23542271 X 6630938..6631105 17..184 840 100 Plus
X 23542271 X 6644823..6644947 377..501 625 100 Plus
X 23542271 X 6648016..6648124 796..904 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:28:26 has no hits.

BO12854.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:50 Download gff for BO12854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3973-RA 780..3710 17..2949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:16 Download gff for BO12854.complete
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..3713 17..2949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:40 Download gff for BO12854.complete
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..3713 17..2949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:40 Download gff for BO12854.complete
Subject Subject Range Query Range Percent Splice Strand
X 6645043..6645338 501..796 100 -> Plus
X 6648017..6648124 797..904 100 -> Plus
X 6648185..6648381 905..1101 100 -> Plus
X 6630938..6631105 17..184 100 -> Plus
X 6644562..6644758 185..381 100 -> Plus
X 6644828..6644946 382..500 100 -> Plus
X 6648502..6649142 1102..1742 99 -> Plus
X 6649206..6650410 1743..2949 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:16 Download gff for BO12854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6524971..6525138 17..184 100 -> Plus
arm_X 6538595..6538791 185..381 100 -> Plus
arm_X 6538861..6538979 382..500 100 -> Plus
arm_X 6539076..6539371 501..796 100 -> Plus
arm_X 6542050..6542157 797..904 100 -> Plus
arm_X 6542218..6542414 905..1101 100 -> Plus
arm_X 6542535..6543175 1102..1742 99 -> Plus
arm_X 6543239..6544443 1743..2949 99   Plus

BO12854.3prime Sequence

844 bp (722 high quality bases) assembled on 2006-05-08

> BO12854.3prime
ATGGTCTAGAAAGCTTGCGTAAAGCTCTGTATGATGACGCACTGGCGCCG
GAATCTTGGACATGCCCCTCTCTCGCCTGGGCGATACCACGCTGGCCGAT
CCAGCAGCTGCTCCGGATCCAGCTCCAGCATTTGAATTGTTACTTTCGCA
GGAACTGGCGGCGGAACTGCGCTTGGAACGCGCCTTGGCTGGTGGAGAAC
AGCTCTCCGAACGCTCCAGATTGCCATTGCTGTGCACCCAGGCCGTAGTG
AAGTCCTCGTAGACCGGTGTCTTTTTCCCATTGCTGTTGATCTTATTCGC
TGCTGTTGCCGTTGCTCCAACTCCTGCCTTTGTTTGATTACCAGCCGCAT
AGCGTGAGAGTAGTGACTTCATCTTCTCCAAAATTTGGGCATCGTTCTTG
GCACTGCTGGCCGCCTCCAGGAGTTGTTGGGCAAGTGGCGAGGAGGCGTG
ATTCTTAACGGGCGACGTGGTTAGCGAACTGGTGCATCCCGGTGCACCGC
TCCTCACCCGGCGTCCGTTGCTGTCGTAGAGAATTTGCGATGAGCGTCCT
TTGCCATTGCGCTCGAAGGATCCAGCTGGTCCTGTTCCATTTGTGGGTGC
CACAAAGGTATCGGCGGTGCAGGGAGGTCTTCGCTTTGGTGCTCCCGTGG
TTCGGCCGCTCCACGTATTCGTGACATCACGCACCATAGGCAATTGGGTG
GCTTGACGGGATCGGGGAGGTGCCACCGGCGTTGTAGTGGCTCCGGTTGA
GTTGCGAGTTCGAACGGATCGATAAACCGGTTGTTTGCGGCTAAAAACTG
GAGCCGGGTAGACCAGACCGGCTGCTCAAATCCTGTAGACTTCC

BO12854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3973-PA 2934 CG3973-RA 2143..2931 807..19 3895 99.7 Minus
CG3973-PA 2934 CG3973-RA 2107..2144 844..807 190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 6318 CG3973-RC 2889..3713 844..19 4075 99.6 Minus
pigs-RB 6272 CG3973-RB 2843..3667 844..19 4075 99.6 Minus
pigs-RA 5401 CG3973-RA 2889..3713 844..19 4075 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6649586..6650410 844..19 4050 99.6 Minus
Blast to na_te.dros performed 2015-02-10 18:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2398 334..270 126 70.8 Minus

BO12854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:50 Download gff for BO12854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3973-PA 2107..2934 18..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:46 Download gff for BO12854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3973-PA 2107..2934 18..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:16 Download gff for BO12854.3prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 2889..3717 13..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:31 Download gff for BO12854.3prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 2889..3717 13..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:31 Download gff for BO12854.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6649586..6650414 13..844 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:16 Download gff for BO12854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6543619..6544447 13..844 99   Minus

BO12854.5prime Sequence

810 bp (798 high quality bases) assembled on 2006-05-08

> BO12854.5prime
GAAGTTATCAGTCGACATGGCCATGTTAGAGGCGCGGCCATATAGGCCAT
TTAAATCCAGTGAGGAATATCTGGAGGCCATGAGGGAGGATTTGGCCGAG
TGGCTAAGCACACTCTATCCAGAGCTGAGCATCAATGCCGATAACTTTAT
GGATCGTTTGGACACGGGAGTAGCATTGTGCAAGCACGCAAATTATGTGA
GACAGGCGGCTGTGGATTATCTGGCACGGCGACAGGCCCGCAACAAATCG
ATGACCCGCTCGATGACCTCGGGCCTGGCGGGTCCCATTCTGGCCATGGG
CAATGTCCACTACCTTCCGGCAGCCAAGAGTGGCACCTTCTTTGCCCGCG
ACAATGTTTCCAACTTTATAACCTGGTGCAGAAAGAGCCTAAAGATCATC
GAGTGCCTGCTGTTCGAAACGGACGATCTGATCATGCGCAAAAACGAGAA
GCATGTGATCCTGTGCCTTCTGGAGGTGGCACGTCGGGGAGCCAAGTTTG
GAATGTTGGCTCCCATGCTGGTGCAAATGGAGCGACAAATCGATCGGGAG
ATCGCCGCGGACATCAAGGCCAATGGAGCTGGCTGCTCGGAAAATGGCAC
CCAAACGGATGCACTGGAGACCGGAAATAGTAGTGCCGCCACAATGACGA
CAATAACGACGACCACAGTGGAAACGGATCTATATGATGACAGCGACGAT
TCGGAGACCGAGGATGATGGCGACCAGAATCCCGTGCTGATGTACGGACC
ACAGCCCCAGATAATCACCAATGATCTGAAGAGCCTCGACGAAATGGTCA
GAGATCTTGT

BO12854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3973-PA 2934 CG3973-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-RC 6318 CG3973-RC 783..1576 17..810 3970 100 Plus
pigs-RB 6272 CG3973-RB 737..1530 17..810 3970 100 Plus
pigs-RA 5401 CG3973-RA 783..1576 17..810 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6645042..6645340 500..798 1495 100 Plus
X 23542271 X 6644560..6644758 183..381 995 100 Plus
X 23542271 X 6630938..6631105 17..184 840 100 Plus
X 23542271 X 6644823..6644947 377..501 625 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:23:21 has no hits.

BO12854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:51 Download gff for BO12854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3973-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:47 Download gff for BO12854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3973-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:21 Download gff for BO12854.5prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..1576 17..810 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:03:33 Download gff for BO12854.5prime
Subject Subject Range Query Range Percent Splice Strand
pigs-RA 783..1576 17..810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:33 Download gff for BO12854.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6630938..6631105 17..184 100 -> Plus
X 6644562..6644758 185..381 100 -> Plus
X 6644828..6644946 382..500 100 -> Plus
X 6645043..6645338 501..796 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:21 Download gff for BO12854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6524971..6525138 17..184 100 -> Plus
arm_X 6538595..6538791 185..381 100 -> Plus
arm_X 6538861..6538979 382..500 100 -> Plus
arm_X 6539076..6539371 501..796 100 -> Plus

BO12854.pep Sequence

Translation from 16 to 2965

> BO12854.pep
MAMLEARPYRPFKSSEEYLEAMREDLAEWLSTLYPELSINADNFMDRLDT
GVALCKHANYVRQAAVDYLARRQARNKSMTRSMTSGLAGPILAMGNVHYL
PAAKSGTFFARDNVSNFITWCRKSLKIIECLLFETDDLIMRKNEKHVILC
LLEVARRGAKFGMLAPMLVQMERQIDREIAADIKANGAGCSENGTQTDAL
ETGNSSAATMTTITTTTVETDLYDDSDDSETEDDGDQNPVLMYGPQPQII
TNDLKSLDEMVRDLVEKCTCPSQFPMVRVSEGKYRIGDTKVLIFVRILRS
HVMVRVGGGWDTLSHYLDKHDPCRCRAQHRSSVAARLIPRQSPNHNPSNG
IELHKAQVIFERSPPAARRVFNSPNCNGGPGTGSSCGTGVVGVAVPPTLQ
NGHSLSPNSGKYRSRSPTPQRKFLNQQANGGGIASATGSSQTVTTDTSSG
QLLGSPSLARRSMSPSPRRLIDMRKKQSSLDSYSSGPKSLPGYSCSMEEA
NGGSGVGSAAGGVSSGSAGSGVAGEQGGANKFENISDNGSEISDEGYRSL
GVIQSGAQKRESLHSQASIEDAESNARLDQTSSDSQISPSDEPAEKATTD
ILEEEDLNGQDREEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFIT
DDEITVDIAKTEDQSVANTMGNPTPNLSKIPRSPLAQRRRRSIDNSTCGG
AGGSLQDLSSRSGLPAPAFSRKQPVYRSVRTRNSTGATTTPVAPPRSRQA
TQLPMVRDVTNTWSGRTTGAPKRRPPCTADTFVAPTNGTGPAGSFERNGK
GRSSQILYDSNGRRVRSGAPGCTSSLTTSPVKNHASSPLAQQLLEAASSA
KNDAQILEKMKSLLSRYAAGNQTKAGVGATATAANKINSNGKKTPVYEDF
TTAWVHSNGNLERSESCSPPAKARSKRSSAASSCESNNSNAGAGSGAAAG
SASVVSPRRERGMSKIPAPVRHHTELYASFLDH

BO12854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
pigs-PC 977 CG3973-PC 1..977 1..977 5032 100 Plus
pigs-PB 977 CG3973-PB 1..977 1..977 5032 100 Plus
pigs-PA 977 CG3973-PA 1..977 1..977 5032 100 Plus
shot-PAB 4100 CG18076-PAB 3764..4013 252..521 230 27.7 Plus
shot-PC 5160 CG18076-PC 4802..5051 252..521 230 27.7 Plus