Clone Sequence Records
BO12855.3prime Sequence
830 bp (758 high quality bases) assembled on 2006-05-08
> BO12855.3prime
ATGGTCTAGAAAGCTTGCTTGCTCGGCCAATTTGGCCAGCAGCTCATCCA
CAACATCGACATTGCGCACAGAGATTATACCACCCGCGTTTCGCTTCCAA
TCGGCATCGGCTTCAGCATCCTCAATCAGGTACTTCAATGGCACTGCCTT
TTGCTCCGCCACACTGGCCGCATAGTCCAGCACATCTCCGCCGAGCGCAC
GGAGTATGGCTTGCGGAGCACACGTGTCCCACTTGAAGGTGGAGCCTTTG
CTAAGCAGATACACATCCACCTCGTGGGTAATCACCTTCAAGGCCTTATG
TCCAGCACCGGCGGAGAATGCAAACTCGTAGCCCAGATCGAGGAAACGCT
GAAGGATATCGGACTGTTCCGAGCTGGAGAAGATGCCCAAACGGCGGTTC
TCATCGCGCGCCTCAAAGTCGCAGTTGTGTGCCCTTACCGTCGGCAGGCA
GACGCCCCAGAACATCGAGGAGCTGTACACGTTCTCCTCCAGCTTCTCCC
CGAACGGTTGAGCCACCACTCCCATCACCGGTACGCCGGTGTCCCGTTCG
TAGACGCCAATTAGCACGGTGACGCAGTCCAGGCCAGTGGACGTGATGCC
GGGAAAGTCGGTGAACATGGTGTCACCCGAAATGTACTCGGCGGTAGCGT
CAATTGGATCGATCCAGATGCCCAAATTGCCGTAATCCAGTTCGTCCGGC
AGTTGGGCAATCTCGCCCAGCTTTTCGCTGCTGAAGCTGACATCCCGATG
GACTTCGGTGGCCAGAGCACTGGCCGCATCCTCGTGCCCGCTGAGTACAG
CCTGCAGACAGGCGGCGGTGTCCTCCTCAG
BO12855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3028-PA | 1128 | Ipp-RA | 314..1125 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1402 | CG3028-RA | 447..1258 | 830..19 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13959698..13960330 | 651..19 | 3165 | 100 | Minus |
| 3R | 32079331 | 3R | 13959235..13959414 | 830..651 | 900 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 18:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1307..1363 | 557..614 | 125 | 72.9 | Plus |
BO12855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:52 Download gff for
BO12855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-PA | 314..1128 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:48 Download gff for
BO12855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3028-PA | 314..1128 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:34 Download gff for
BO12855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 485..1296 | 19..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:25 Download gff for
BO12855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 447..1258 | 19..830 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:25 Download gff for
BO12855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13959235..13959414 | 651..830 | 100 | -> | Minus |
| 3R | 13959699..13960330 | 19..650 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:34 Download gff for
BO12855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9784957..9785136 | 651..830 | 100 | -> | Minus |
| arm_3R | 9785421..9786052 | 19..650 | 100 | | Minus |
BO12855.5prime Sequence
919 bp (844 high quality bases) assembled on 2006-05-08
> BO12855.5prime
GAAGTTATCAGTCGACATGAGCGGCGTGGAGGAGCAGGCGAGTCTGCTGC
GCGTACTGATCAACTGTGCGGAGAAGGCGGCCAACATAGCCAGGATATGT
CGCTCCAACGAGCAGCTCCTGGCATTGCTGGTGCAGGAGAAGATCGGATC
CGAGGCCAATGAGCGCTTCGAGCACGACTTCAAGACCCTGGCCGATGTGC
TCATCCAGGAGACGATCAAGCACGAGGTGGGTGCGCTCTTTCCTGCCATG
AAGGATGCCATCCTGGGCGAGGAATCGCCCAATTTCACCAACCAACTGGG
CGAGAGTGTCACCATTGCAGTGGGTGCCACTGAGGAGGACACCGCCGCCT
GTCTGCAGGCTGTACTCAGCGGGCACGAGGATGCGGCCAGTGCTCTGGCC
ACCGAAGTCCATCGGGATGTCAGCTTCAGCAGCGAAAAGCTGGGCGAGAT
TGCCCAACTGCCGGACGAACTGGATTACGGCAATTTGGGCATCTGGATCG
ATCCAATTGACGCTACCGCCGAGTACATTTCGGGTGACACCATGTTCACC
GACTTTCCCGGCATCACGTCCACTGGCCTGGACTGCGTCACCGTGCTAAT
TGGCGTCTACGAACGGGACACCGGCGTACCGGTGATGGGAGTGGTGGCTC
AACCGTTCGGGGAGAAGCTGGAGGAGAACGTGTACAGCTCCTCGATGTTC
TGGGGCGTCTGCCTGCCGACGGTAAGGGCACACAACTGCGACTTTGAGGC
GCGCGATGAGAACCGCCGTTTGGGCATCTTCTCCAGCTCGGAACAGTCCC
ATATCCTTCAGCGTTTCCTCGATCTGGGCTACGAGTTTGCATTCTCCGCC
GGTGCTGGACATAAGGCCTTGAAGGTGATTACCCACGAGGTGGATGTGTA
TCTGCTTAGCAAAAGCTCC
BO12855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3028-PA | 1128 | Ipp-RA | 1..903 | 17..919 | 4465 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1402 | CG3028-RA | 134..1036 | 17..919 | 4485 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13958922..13959414 | 17..509 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 13959698..13960108 | 509..919 | 2025 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-13 02:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1307..1363 | 603..546 | 125 | 72.9 | Minus |
BO12855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:53 Download gff for
BO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:50 Download gff for
BO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3028-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:15 Download gff for
BO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 168..1074 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:36:05 Download gff for
BO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 130..1036 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:36:05 Download gff for
BO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13959699..13960108 | 510..919 | 99 | | Plus |
| 3R | 13958918..13959414 | 9..509 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:15 Download gff for
BO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9784640..9785136 | 9..509 | 99 | -> | Plus |
| arm_3R | 9785421..9785830 | 510..919 | 99 | | Plus |
BO12855.complete Sequence
1159 bp assembled on 2006-10-11
GenBank Submission: FJ632607
> BO12855.complete
GAAGTTATCAGTCGACATGAGCGGCGTGGAGGAGCAGGCGAGTCTGCTGC
GCGTACTGATCAACTGTGCGGAGAAGGCGGCCAACATAGCCAGGATATGT
CGCTCCAACGAGCAGCTCCTGGCATTGCTGGTGCAGGAGAAGATCGGATC
CGAGGCCAATGAGCGCTTCGAGCACGACTTCAAGACCCTGGCCGATGTGC
TCATCCAGGAGACGATCAAGCACGAGGTGGGTGCGCTCTTTCCTGCCATG
AAGGATGCCATCCTGGGCGAGGAATCGCCCAATTTCACCAACCAACTGGG
CGAGAGTGTCACCATTGCAGTGGGTGCCACTGAGGAGGACACCGCCGCCT
GTCTGCAGGCTGTACTCAGCGGGCACGAGGATGCGGCCAGTGCTCTGGCC
ACCGAAGTCCATCGGGATGTCAGCTTCAGCAGCGAAAAGCTGGGCGAGAT
TGCCCAACTGCCGGACGAACTGGATTACGGCAATTTGGGCATCTGGATCG
ATCCAATTGACGCTACCGCCGAGTACATTTCGGGTGACACCATGTTCACC
GACTTTCCCGGCATCACGTCCACTGGCCTGGACTGCGTCACCGTGCTAAT
TGGCGTCTACGAACGGGACACCGGCGTACCGGTGATGGGAGTGGTGGCTC
AACCGTTCGGGGAGAAGCTGGAGGAGAACGTGTACAGCTCCTCGATGTTC
TGGGGCGTCTGCCTGCCGACGGTAAGGGCACACAACTGCGACTTTGAGGC
GCGCGATGAGAACCGCCGTTTGGGCATCTTCTCCAGCTCGGAACAGTCCG
ATATCCTTCAGCGTTTCCTCGATCTGGGCTACGAGTTTGCATTCTCCGCC
GGTGCTGGACATAAGGCCTTGAAGGTGATTACCCACGAGGTGGATGTGTA
TCTGCTTAGCAAAGGCTCCACCTTCAAGTGGGACACGTGTGCTCCGCAAG
CCATACTCCGTGCGCTCGGCGGAGATGTGCTGGACTATGCGGCCAGTGTG
GCGGAGCAAAAGGCAGTGCCATTGAAGTACCTGATTGAGGATGCTGAAGC
CGATGCCGATTGGAAGCGAAACGCGGGTGGTATAATCTCTGTGCGCAATG
TCGATGTTGTGGATGAGCTGCTGGCCAAATTGGCCGAGCAAGCAAGCTTT
CTAGACCAT
BO12855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1128 | CG3028-PA | 1..1125 | 17..1141 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1402 | CG3028-RA | 134..1258 | 17..1141 | 5625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13959698..13960330 | 509..1141 | 3165 | 100 | Plus |
| 3R | 32079331 | 3R | 13958922..13959414 | 17..509 | 2465 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1307..1363 | 603..546 | 125 | 72.9 | Minus |
BO12855.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:42 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 1..1128 | 17..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:00 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 168..1296 | 9..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:59 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 172..1296 | 17..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:42 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 168..1296 | 9..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:20 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 134..1258 | 17..1143 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:20 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13958922..13959414 | 17..509 | 100 | -> | Plus |
| 3R | 13959699..13960330 | 510..1143 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:59 Download gff for
BO12855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9784644..9785136 | 17..509 | 100 | -> | Plus |
| arm_3R | 9785421..9786052 | 510..1143 | 99 | | Plus |
BO12855.pep Sequence
Translation from 16 to 1159
> BO12855.pep
MSGVEEQASLLRVLINCAEKAANIARICRSNEQLLALLVQEKIGSEANER
FEHDFKTLADVLIQETIKHEVGALFPAMKDAILGEESPNFTNQLGESVTI
AVGATEEDTAACLQAVLSGHEDAASALATEVHRDVSFSSEKLGEIAQLPD
ELDYGNLGIWIDPIDATAEYISGDTMFTDFPGITSTGLDCVTVLIGVYER
DTGVPVMGVVAQPFGEKLEENVYSSSMFWGVCLPTVRAHNCDFEARDENR
RLGIFSSSEQSDILQRFLDLGYEFAFSAGAGHKALKVITHEVDVYLLSKG
STFKWDTCAPQAILRALGGDVLDYAASVAEQKAVPLKYLIEDAEADADWK
RNAGGIISVRNVDVVDELLAKLAEQASFLDH
BO12855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-PA | 375 | CG3028-PA | 1..375 | 1..375 | 1907 | 100 | Plus |
| CG7789-PA | 306 | CG7789-PA | 113..256 | 159..319 | 157 | 27.4 | Plus |
