Clone Sequence Records
BO12856.3prime Sequence
548 bp (547 high quality bases) assembled on 2006-05-08
> BO12856.3prime
ATGGTCTAGAAAGCTTGCCATTTCCTGGCCTGCGACCACTTTGTCAACAA
ACGCCTGAAGCTCGGCTTGTCCCTCTGCGTCGGGGGCTGCCATGATCTTG
TCGAGAATCTGCCAGTTAATGTGCTTATTCAATAGTCCCCGTTTGATGAC
AAAGGCGCGCATCATAATGTTGAAATAGCGAGCTCTCCAAGCGGAACGCA
GTCGCGGAATGTAGATGCGATTGTTGACCATCTCGTTGTCGTCCACATCG
TAGATGTCGACTTCGCTGCCCTTCTCCTCGACAGGCTGGTCCTGCTTCTT
TGGAGCGATTTTCTTACGCTTCTTTGGCTTTGGCGGCAGGGGATTCGATT
CCGGCTGTCGGTTGGCCAGCTTCGCCATCCATCTAGATTGCAGGTCGGCC
AGCGCCAGGTACTCCTTGTGCGTTAGGTTTGGCACATCGCGGAATAGTCC
CTCCATCATATCGATCATCACATCCTCCGGAAAGCTGCACGACTCCGGTA
TCCAGATGCCATCGGTGGGCAATATCTTGGCCATGTCGACTGATAACT
BO12856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-PA | 519 | CG12721-RA | 1..516 | 534..19 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-RA | 811 | CG12721-RA | 88..604 | 535..19 | 2585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12072215..12072731 | 19..535 | 2585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:20:20 has no hits.
BO12856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:54 Download gff for
BO12856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-PA | 1..519 | 18..534 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:51 Download gff for
BO12856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-PA | 1..519 | 18..534 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:10 Download gff for
BO12856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 88..604 | 19..535 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:58 Download gff for
BO12856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 88..604 | 19..535 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:58 Download gff for
BO12856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12072215..12072731 | 19..535 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:10 Download gff for
BO12856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11966248..11966764 | 19..535 | 100 | | Plus |
BO12856.5prime Sequence
548 bp (547 high quality bases) assembled on 2006-05-08
> BO12856.5prime
GAAGTTATCAGTCGACATGGCCAAGATATTGCCCACCGATGGCATCTGGA
TACCGGAGTCGTGCAGCTTTCCGGAGGATGTGATGATCGATATGATGGAG
GGACTATTCCGCGATGTGCCAAACCTAACGCACAAGGAGTACCTGGCGCT
GGCCGACCTGCAATCTAGATGGATGGCGAAGCTGGCCAACCGACAGCCGG
AATCGAATCCCCTGCCGCCAAAGCCAAAGAAGCGTAAGAAAATCGCTCCA
AAGAAGCAGGACCAGCCTGTCGAGGAGAAGGGCAGCGAAGTCGACATCTA
CGATGTGGACGACAACGAGATGGTCAACAATCGCATCTACATTCCGCGAC
TGCGTTCCGCTTGGAGAGCTCGCTATTTCAACATTATGATGCGCGCCTTT
GTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGA
CAAGATCATGGCAGCCCCCGACGCAGAGGGACAAGCCGAGCTTCAGGCGT
TTGTTGACAAAGTGGTCGCAGGCCAGGAAATGGCAAGCTTTCTAGACC
BO12856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-PA | 519 | CG12721-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-RA | 811 | CG12721-RA | 88..604 | 16..532 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12072215..12072731 | 532..16 | 2585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:40 has no hits.
BO12856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:47:55 Download gff for
BO12856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-PA | 1..519 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:53 Download gff for
BO12856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-PA | 1..519 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:34 Download gff for
BO12856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 88..604 | 16..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:19 Download gff for
BO12856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 88..604 | 16..532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:19 Download gff for
BO12856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12072215..12072731 | 16..532 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:34 Download gff for
BO12856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11966248..11966764 | 16..532 | 100 | | Minus |
BO12856.complete Sequence
550 bp assembled on 2006-10-11
GenBank Submission: FJ632608
> BO12856.complete
GAAGTTATCAGTCGACATGGCCAAGATATTGCCCACCGATGGCATCTGGA
TACCGGAGTCGTGCAGCTTTCCGGAGGATGTGATGATCGATATGATGGAG
GGACTATTCCGCGATGTGCCAAACCTAACGCACAAGGAGTACCTGGCGCT
GGCCGACCTGCAATCTAGATGGATGGCGAAGCTGGCCAACCGACAGCCGG
AATCGAATCCCCTGCCGCCAAAGCCAAAGAAGCGTAAGAAAATCGCTCCA
AAGAAGCAGGACCAGCCTGTCGAGGAGAAGGGCAGCGAAGTCGACATCTA
CGATGTGGACGACAACGAGATGGTCAACAATCGCATCTACATTCCGCGAC
TGCGTTCCGCTTGGAGAGCTCGCTATTTCAACATTATGATGCGCGCCTTT
GTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGA
CAAGATCATGGCAGCCCCCGACGCAGAGGGACAAGCCGAGCTTCAGGCGT
TTGTTGACAAAGTGGTCGCAGGCCAGGAAATGGCAAGCTTTCTAGACCAT
BO12856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-RA | 519 | CG12721-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-RA | 811 | CG12721-RA | 88..604 | 16..532 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12072215..12072731 | 532..16 | 2585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:07 has no hits.
BO12856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:57 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 1..519 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:49 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 85..601 | 16..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:24 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 89..604 | 17..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:57 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 85..601 | 16..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:41 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12721-RA | 89..604 | 17..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:41 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12072213..12072730 | 17..534 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:24 Download gff for
BO12856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11966246..11966763 | 17..534 | 99 | | Minus |
BO12856.pep Sequence
Translation from 16 to 550
> BO12856.pep
MAKILPTDGIWIPESCSFPEDVMIDMMEGLFRDVPNLTHKEYLALADLQS
RWMAKLANRQPESNPLPPKPKKRKKIAPKKQDQPVEEKGSEVDIYDVDDN
EMVNNRIYIPRLRSAWRARYFNIMMRAFVIKRGLLNKHINWQILDKIMAA
PDAEGQAELQAFVDKVVAGQEMASFLDH
BO12856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12721-PA | 172 | CG12721-PA | 1..172 | 1..172 | 904 | 100 | Plus |
