Clone Sequence Records
BO12861.3prime Sequence
723 bp (721 high quality bases) assembled on 2006-05-08
> BO12861.3prime
ATGGTCTAGAAAGCTTGCTCTTTCCAGTAGCGTGCCGCGCTGCTTCTTCT
GCGGCGGAGGTGCGTCCTCTGTCTTGGTTTTGATGCCCACATCGCTCAAT
TTTCCGCCTTTGCGCTGCAGTTGCTTCTCGATAATCCTTGCGTTGTTCGC
ATAGCTGTCTGCGATCTCGCGCGCCTCGATTTCATCCTCCTCCTCGTCGA
TGGTAGACACCGTGACCGAGCTGAACTTGCCCATGTTCTTCGTGTGTCTG
GTGACGACGACCTTCTTGCCACTGGCATCCACAATACCCGAATCGTCTGG
ACCGGCGGAAGTCGCTGGCTTGGCAGCCGGTGCCTTGAAACTGCCCTTGA
TCTCCGAATTCAGCAGCTGTGTGAGAGGACTCTCACCCTTGTTGCGGATT
AGGGCATTGGACATGACGAAGGTTACGTGGGAGTCGGGACTGTGGCGATA
GTAAAGCGGCAGACTGCAGCTTCGGCACTTGTAGCGGTACTGCTTCTCGA
TCCCATTGCCCCTGCTCTTGCGTTTGATGTAGACCATCCTCGGTGTGGGA
TTGTGGGTGAGTTTGTTGGCATGGTCGTTGGCGTTTATCACACGGGCGTT
GTCCACCTCTCGTAGCGGCAACTGTTCGAGGGTGCAATCCAGAATCAGAG
CCATCTTGTTGCACAGACAGTAGTAAATGTTTAGCGGCTTTTCCTCGTTG
TACTCCTCCTGATCCTTGGTATC
BO12861.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-PA | 744 | CG16865-RA | 37..741 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 1549 | CG16865-RB | 160..864 | 723..19 | 3525 | 100 | Minus |
CG16865-RA | 915 | CG16865-RA | 160..864 | 723..19 | 3525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13812050..13812357 | 479..172 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 13811825..13811986 | 639..478 | 810 | 100 | Minus |
2L | 23513712 | 2L | 13812478..13812631 | 172..19 | 770 | 100 | Minus |
2L | 23513712 | 2L | 13811681..13811765 | 723..639 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:28:18 has no hits.
BO12861.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:00 Download gff for
BO12861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-PA | 37..744 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:00 Download gff for
BO12861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-PA | 37..744 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:59 Download gff for
BO12861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 160..864 | 19..723 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:58 Download gff for
BO12861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 160..864 | 19..723 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:58 Download gff for
BO12861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13811681..13811765 | 639..723 | 100 | -> | Minus |
2L | 13811826..13811986 | 478..638 | 100 | -> | Minus |
2L | 13812052..13812357 | 172..477 | 100 | -> | Minus |
2L | 13812479..13812633 | 14..171 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:59 Download gff for
BO12861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13811681..13811765 | 639..723 | 100 | -> | Minus |
arm_2L | 13811826..13811986 | 478..638 | 100 | -> | Minus |
arm_2L | 13812052..13812357 | 172..477 | 100 | -> | Minus |
arm_2L | 13812479..13812633 | 14..171 | 97 | -> | Minus |
BO12861.5prime Sequence
776 bp (772 high quality bases) assembled on 2006-05-08
> BO12861.5prime
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCTACT
GGAAAGAGCAAGCTTTCTAGACCATT
BO12861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-PA | 744 | CG16865-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 1549 | CG16865-RB | 123..864 | 16..757 | 3710 | 100 | Plus |
CG16865-RA | 915 | CG16865-RA | 123..864 | 16..757 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13812050..13812357 | 297..604 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13811825..13811986 | 137..298 | 810 | 100 | Plus |
2L | 23513712 | 2L | 13812478..13812631 | 604..757 | 770 | 100 | Plus |
2L | 23513712 | 2L | 13811644..13811765 | 16..137 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:30:27 has no hits.
BO12861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:01 Download gff for
BO12861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-PA | 1..744 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:01 Download gff for
BO12861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-PA | 1..744 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:11 Download gff for
BO12861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 123..864 | 16..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:30 Download gff for
BO12861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 123..864 | 16..757 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:30 Download gff for
BO12861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13811644..13811765 | 16..137 | 100 | -> | Plus |
2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
2L | 13812479..13812633 | 605..762 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:11 Download gff for
BO12861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13811644..13811765 | 16..137 | 100 | -> | Plus |
arm_2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
arm_2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
arm_2L | 13812479..13812633 | 605..762 | 97 | -> | Plus |
BO12861.complete Sequence
775 bp assembled on 2006-10-11
GenBank Submission: FJ638710
> BO12861.complete
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCTACT
GGAAAGAGCAAGCTTTCTAGACCAT
BO12861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 744 | CG16865-PB | 1..741 | 17..757 | 3705 | 100 | Plus |
CG16865-RA | 744 | CG16865-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 1549 | CG16865-RB | 123..864 | 16..757 | 3710 | 100 | Plus |
CG16865-RA | 915 | CG16865-RA | 123..864 | 16..757 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13812050..13812357 | 297..604 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13811825..13811986 | 137..298 | 810 | 100 | Plus |
2L | 23513712 | 2L | 13812478..13812631 | 604..757 | 770 | 100 | Plus |
2L | 23513712 | 2L | 13811644..13811765 | 16..137 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:57 has no hits.
BO12861.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:09 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 1..744 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:20 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 119..860 | 16..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:39 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 124..864 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:10 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 119..860 | 16..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:11 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 124..864 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:11 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
2L | 13812479..13812631 | 605..759 | 98 | | Plus |
2L | 13811645..13811765 | 17..137 | 100 | -> | Plus |
2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:39 Download gff for
BO12861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13811645..13811765 | 17..137 | 100 | -> | Plus |
arm_2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
arm_2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
arm_2L | 13812479..13812631 | 605..759 | 98 | | Plus |
BO12861.pep Sequence
Translation from 16 to 775
> BO12861.pep
MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLR
EVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSL
PLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPAT
SAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIA
DSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLERASF
LDH
BO12861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-PB | 247 | CG16865-PB | 1..247 | 1..247 | 1280 | 100 | Plus |
CG16865-PA | 247 | CG16865-PA | 1..247 | 1..247 | 1280 | 100 | Plus |