Clone BO12861 Report

Search the DGRC for BO12861

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG16865-RA
Protein status:BO12861.pep: validated full length
Sequenced Size:775

Clone Sequence Records

BO12861.3prime Sequence

723 bp (721 high quality bases) assembled on 2006-05-08

> BO12861.3prime
ATGGTCTAGAAAGCTTGCTCTTTCCAGTAGCGTGCCGCGCTGCTTCTTCT
GCGGCGGAGGTGCGTCCTCTGTCTTGGTTTTGATGCCCACATCGCTCAAT
TTTCCGCCTTTGCGCTGCAGTTGCTTCTCGATAATCCTTGCGTTGTTCGC
ATAGCTGTCTGCGATCTCGCGCGCCTCGATTTCATCCTCCTCCTCGTCGA
TGGTAGACACCGTGACCGAGCTGAACTTGCCCATGTTCTTCGTGTGTCTG
GTGACGACGACCTTCTTGCCACTGGCATCCACAATACCCGAATCGTCTGG
ACCGGCGGAAGTCGCTGGCTTGGCAGCCGGTGCCTTGAAACTGCCCTTGA
TCTCCGAATTCAGCAGCTGTGTGAGAGGACTCTCACCCTTGTTGCGGATT
AGGGCATTGGACATGACGAAGGTTACGTGGGAGTCGGGACTGTGGCGATA
GTAAAGCGGCAGACTGCAGCTTCGGCACTTGTAGCGGTACTGCTTCTCGA
TCCCATTGCCCCTGCTCTTGCGTTTGATGTAGACCATCCTCGGTGTGGGA
TTGTGGGTGAGTTTGTTGGCATGGTCGTTGGCGTTTATCACACGGGCGTT
GTCCACCTCTCGTAGCGGCAACTGTTCGAGGGTGCAATCCAGAATCAGAG
CCATCTTGTTGCACAGACAGTAGTAAATGTTTAGCGGCTTTTCCTCGTTG
TACTCCTCCTGATCCTTGGTATC

BO12861.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-PA 744 CG16865-RA 37..741 723..19 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 160..864 723..19 3525 100 Minus
CG16865-RA 915 CG16865-RA 160..864 723..19 3525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 479..172 1540 100 Minus
2L 23513712 2L 13811825..13811986 639..478 810 100 Minus
2L 23513712 2L 13812478..13812631 172..19 770 100 Minus
2L 23513712 2L 13811681..13811765 723..639 425 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:28:18 has no hits.

BO12861.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:00 Download gff for BO12861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-PA 37..744 18..723 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:00 Download gff for BO12861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-PA 37..744 18..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:59 Download gff for BO12861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 160..864 19..723 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:58 Download gff for BO12861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 160..864 19..723 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:58 Download gff for BO12861.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13811681..13811765 639..723 100 -> Minus
2L 13811826..13811986 478..638 100 -> Minus
2L 13812052..13812357 172..477 100 -> Minus
2L 13812479..13812633 14..171 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:59 Download gff for BO12861.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811681..13811765 639..723 100 -> Minus
arm_2L 13811826..13811986 478..638 100 -> Minus
arm_2L 13812052..13812357 172..477 100 -> Minus
arm_2L 13812479..13812633 14..171 97 -> Minus

BO12861.5prime Sequence

776 bp (772 high quality bases) assembled on 2006-05-08

> BO12861.5prime
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCTACT
GGAAAGAGCAAGCTTTCTAGACCATT

BO12861.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-PA 744 CG16865-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 123..864 16..757 3710 100 Plus
CG16865-RA 915 CG16865-RA 123..864 16..757 3710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 297..604 1540 100 Plus
2L 23513712 2L 13811825..13811986 137..298 810 100 Plus
2L 23513712 2L 13812478..13812631 604..757 770 100 Plus
2L 23513712 2L 13811644..13811765 16..137 610 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:30:27 has no hits.

BO12861.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:01 Download gff for BO12861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-PA 1..744 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:01 Download gff for BO12861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-PA 1..744 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:11 Download gff for BO12861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 123..864 16..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:30 Download gff for BO12861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 123..864 16..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:30 Download gff for BO12861.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13811644..13811765 16..137 100 -> Plus
2L 13811826..13811986 138..298 100 -> Plus
2L 13812052..13812357 299..604 100 -> Plus
2L 13812479..13812633 605..762 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:11 Download gff for BO12861.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811644..13811765 16..137 100 -> Plus
arm_2L 13811826..13811986 138..298 100 -> Plus
arm_2L 13812052..13812357 299..604 100 -> Plus
arm_2L 13812479..13812633 605..762 97 -> Plus

BO12861.complete Sequence

775 bp assembled on 2006-10-11

GenBank Submission: FJ638710

> BO12861.complete
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCTACT
GGAAAGAGCAAGCTTTCTAGACCAT

BO12861.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 744 CG16865-PB 1..741 17..757 3705 100 Plus
CG16865-RA 744 CG16865-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 123..864 16..757 3710 100 Plus
CG16865-RA 915 CG16865-RA 123..864 16..757 3710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 297..604 1540 100 Plus
2L 23513712 2L 13811825..13811986 137..298 810 100 Plus
2L 23513712 2L 13812478..13812631 604..757 770 100 Plus
2L 23513712 2L 13811644..13811765 16..137 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:49:57 has no hits.

BO12861.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:09 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 1..744 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:20 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 119..860 16..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:39 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 124..864 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:10 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 119..860 16..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:11 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 124..864 17..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:11 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13812052..13812357 299..604 100 -> Plus
2L 13812479..13812631 605..759 98   Plus
2L 13811645..13811765 17..137 100 -> Plus
2L 13811826..13811986 138..298 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:39 Download gff for BO12861.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811645..13811765 17..137 100 -> Plus
arm_2L 13811826..13811986 138..298 100 -> Plus
arm_2L 13812052..13812357 299..604 100 -> Plus
arm_2L 13812479..13812631 605..759 98   Plus

BO12861.pep Sequence

Translation from 16 to 775

> BO12861.pep
MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLR
EVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSL
PLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPAT
SAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIA
DSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLERASF
LDH

BO12861.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-PB 247 CG16865-PB 1..247 1..247 1280 100 Plus
CG16865-PA 247 CG16865-PA 1..247 1..247 1280 100 Plus