Clone Sequence Records
BO12864.3prime Sequence
527 bp (526 high quality bases) assembled on 2006-05-08
> BO12864.3prime
ATGGTCTAGAAAGCTTGCGCGACGGTACGGCTGCTTGTTGTAACGACCGC
GCTCGTTCTCCTCGGACAGGTTGGCGTATTCACTATAGACCACGCACCAG
CAATAGGTCATAATCGCGCAGACAATTAGGCCGAAGATCAGCCAGAGGAC
TCCCGTCAGCACGTAGCCGTCGATGAAGAAGACGATGCCCGTGTAGATGA
CGGAGATCAGCAGACCGATGGCAATCATAATGCCGAGGACCACCCATGGA
ACCATCAGGTAGTGGTTCCGCTTCAGGGCACCAATGATCATGAGCAGCGA
TATCAAGATCGTCATGCACAAATTGATGACTAGAATTATCTTAACAATGT
CATTGGGGATGAAGTCAAAGATTATCGTCTTGAAGTGCACCCGCGTCGTG
AAGATCACCACGATGGTGATGATCGACAGGACTATCGCCAGTATGCCCGA
GATAACGGAGCCATTCCGGGTCGATTGGCACAGACAGCACGAATTTAACA
GTGGCTTCGGCATGTCGACTGATAACT
BO12864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-PA | 498 | CG10311-RA | 1..495 | 513..19 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 1086 | CG10311-RB | 245..739 | 513..19 | 2475 | 100 | Minus |
CG10311-RA | 966 | CG10311-RA | 245..739 | 513..19 | 2475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16352089..16352331 | 271..513 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 16351878..16352033 | 117..272 | 780 | 100 | Plus |
3R | 32079331 | 3R | 16351133..16351231 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:47:16 has no hits.
BO12864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:06 Download gff for
BO12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:09 Download gff for
BO12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:25 Download gff for
BO12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..739 | 19..513 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:29 Download gff for
BO12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..739 | 19..513 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:29 Download gff for
BO12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16351133..16351230 | 19..116 | 100 | <- | Plus |
3R | 16351878..16352031 | 117..270 | 100 | <- | Plus |
3R | 16352089..16352331 | 271..513 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:25 Download gff for
BO12864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12176855..12176952 | 19..116 | 100 | <- | Plus |
arm_3R | 12177600..12177753 | 117..270 | 100 | <- | Plus |
arm_3R | 12177811..12178053 | 271..513 | 100 | | Plus |
BO12864.5prime Sequence
527 bp (526 high quality bases) assembled on 2006-05-08
> BO12864.5prime
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCGCAAGCTTTCTAGACC
BO12864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-PA | 498 | CG10311-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 1086 | CG10311-RB | 245..739 | 17..511 | 2475 | 100 | Plus |
CG10311-RA | 966 | CG10311-RA | 245..739 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16352089..16352331 | 259..17 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 16351878..16352033 | 413..258 | 780 | 100 | Minus |
3R | 32079331 | 3R | 16351133..16351231 | 511..413 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:01:16 has no hits.
BO12864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:07 Download gff for
BO12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:10 Download gff for
BO12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:18 Download gff for
BO12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..739 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:35:41 Download gff for
BO12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..739 | 17..511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:35:41 Download gff for
BO12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16351133..16351230 | 414..511 | 100 | <- | Minus |
3R | 16351878..16352031 | 260..413 | 100 | <- | Minus |
3R | 16352089..16352331 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:18 Download gff for
BO12864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12176855..12176952 | 414..511 | 100 | <- | Minus |
arm_3R | 12177600..12177753 | 260..413 | 100 | <- | Minus |
arm_3R | 12177811..12178053 | 17..259 | 100 | | Minus |
BO12864.complete Sequence
529 bp assembled on 2006-10-11
GenBank Submission: FJ632609
> BO12864.complete
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCGCAAGCTTTCTAGACCAT
BO12864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 498 | CG10311-PB | 1..495 | 17..511 | 2475 | 100 | Plus |
CG10311-RA | 498 | CG10311-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-RB | 1086 | CG10311-RB | 245..739 | 17..511 | 2475 | 100 | Plus |
CG10311-RA | 966 | CG10311-RA | 245..739 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16352089..16352331 | 259..17 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 16351878..16352033 | 413..258 | 780 | 100 | Minus |
3R | 32079331 | 3R | 16351133..16351231 | 511..413 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:39:02 has no hits.
BO12864.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:56 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:59 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 241..735 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:39 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..739 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:56 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 241..735 | 17..511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:07 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10311-RA | 245..739 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:07 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16351131..16351230 | 414..513 | 98 | <- | Minus |
3R | 16351878..16352031 | 260..413 | 100 | <- | Minus |
3R | 16352089..16352331 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:39 Download gff for
BO12864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12177600..12177753 | 260..413 | 100 | <- | Minus |
arm_3R | 12177811..12178053 | 17..259 | 100 | | Minus |
arm_3R | 12176853..12176952 | 414..513 | 98 | <- | Minus |
BO12864.pep Sequence
Translation from 16 to 529
> BO12864.pep
MPKPLLNSCCLCQSTRNGSVISGILAIVLSIITIVVIFTTRVHFKTIIFD
FIPNDIVKIILVINLCMTILISLLMIIGALKRNHYLMVPWVVLGIMIAIG
LLISVIYTGIVFFIDGYVLTGVLWLIFGLIVCAIMTYCWCVVYSEYANLS
EENERGRYNKQPYRRASFLDH
BO12864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10311-PB | 165 | CG10311-PB | 1..165 | 1..165 | 852 | 100 | Plus |
CG10311-PA | 165 | CG10311-PA | 1..165 | 1..165 | 852 | 100 | Plus |