Clone BO12864 Report

Search the DGRC for BO12864

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG10311-RA
Protein status:BO12864.pep: validated full length
Sequenced Size:529

Clone Sequence Records

BO12864.3prime Sequence

527 bp (526 high quality bases) assembled on 2006-05-08

> BO12864.3prime
ATGGTCTAGAAAGCTTGCGCGACGGTACGGCTGCTTGTTGTAACGACCGC
GCTCGTTCTCCTCGGACAGGTTGGCGTATTCACTATAGACCACGCACCAG
CAATAGGTCATAATCGCGCAGACAATTAGGCCGAAGATCAGCCAGAGGAC
TCCCGTCAGCACGTAGCCGTCGATGAAGAAGACGATGCCCGTGTAGATGA
CGGAGATCAGCAGACCGATGGCAATCATAATGCCGAGGACCACCCATGGA
ACCATCAGGTAGTGGTTCCGCTTCAGGGCACCAATGATCATGAGCAGCGA
TATCAAGATCGTCATGCACAAATTGATGACTAGAATTATCTTAACAATGT
CATTGGGGATGAAGTCAAAGATTATCGTCTTGAAGTGCACCCGCGTCGTG
AAGATCACCACGATGGTGATGATCGACAGGACTATCGCCAGTATGCCCGA
GATAACGGAGCCATTCCGGGTCGATTGGCACAGACAGCACGAATTTAACA
GTGGCTTCGGCATGTCGACTGATAACT

BO12864.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-PA 498 CG10311-RA 1..495 513..19 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 1086 CG10311-RB 245..739 513..19 2475 100 Minus
CG10311-RA 966 CG10311-RA 245..739 513..19 2475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16352089..16352331 271..513 1215 100 Plus
3R 32079331 3R 16351878..16352033 117..272 780 100 Plus
3R 32079331 3R 16351133..16351231 19..117 495 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:47:16 has no hits.

BO12864.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:06 Download gff for BO12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-PA 1..498 18..513 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:09 Download gff for BO12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-PA 1..498 18..513 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:25 Download gff for BO12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..739 19..513 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:29 Download gff for BO12864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..739 19..513 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:29 Download gff for BO12864.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16351133..16351230 19..116 100 <- Plus
3R 16351878..16352031 117..270 100 <- Plus
3R 16352089..16352331 271..513 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:25 Download gff for BO12864.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12176855..12176952 19..116 100 <- Plus
arm_3R 12177600..12177753 117..270 100 <- Plus
arm_3R 12177811..12178053 271..513 100   Plus

BO12864.5prime Sequence

527 bp (526 high quality bases) assembled on 2006-05-08

> BO12864.5prime
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCGCAAGCTTTCTAGACC

BO12864.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-PA 498 CG10311-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 1086 CG10311-RB 245..739 17..511 2475 100 Plus
CG10311-RA 966 CG10311-RA 245..739 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16352089..16352331 259..17 1215 100 Minus
3R 32079331 3R 16351878..16352033 413..258 780 100 Minus
3R 32079331 3R 16351133..16351231 511..413 495 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:01:16 has no hits.

BO12864.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:07 Download gff for BO12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-PA 1..498 17..512 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:10 Download gff for BO12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-PA 1..498 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:18 Download gff for BO12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..739 17..511 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:35:41 Download gff for BO12864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..739 17..511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:35:41 Download gff for BO12864.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16351133..16351230 414..511 100 <- Minus
3R 16351878..16352031 260..413 100 <- Minus
3R 16352089..16352331 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:18 Download gff for BO12864.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12176855..12176952 414..511 100 <- Minus
arm_3R 12177600..12177753 260..413 100 <- Minus
arm_3R 12177811..12178053 17..259 100   Minus

BO12864.complete Sequence

529 bp assembled on 2006-10-11

GenBank Submission: FJ632609

> BO12864.complete
GAAGTTATCAGTCGACATGCCGAAGCCACTGTTAAATTCGTGCTGTCTGT
GCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATAGTC
CTGTCGATCATCACCATCGTGGTGATCTTCACGACGCGGGTGCACTTCAA
GACGATAATCTTTGACTTCATCCCCAATGACATTGTTAAGATAATTCTAG
TCATCAATTTGTGCATGACGATCTTGATATCGCTGCTCATGATCATTGGT
GCCCTGAAGCGGAACCACTACCTGATGGTTCCATGGGTGGTCCTCGGCAT
TATGATTGCCATCGGTCTGCTGATCTCCGTCATCTACACGGGCATCGTCT
TCTTCATCGACGGCTACGTGCTGACGGGAGTCCTCTGGCTGATCTTCGGC
CTAATTGTCTGCGCGATTATGACCTATTGCTGGTGCGTGGTCTATAGTGA
ATACGCCAACCTGTCCGAGGAGAACGAGCGCGGTCGTTACAACAAGCAGC
CGTACCGTCGCGCAAGCTTTCTAGACCAT

BO12864.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 498 CG10311-PB 1..495 17..511 2475 100 Plus
CG10311-RA 498 CG10311-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-RB 1086 CG10311-RB 245..739 17..511 2475 100 Plus
CG10311-RA 966 CG10311-RA 245..739 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16352089..16352331 259..17 1215 100 Minus
3R 32079331 3R 16351878..16352033 413..258 780 100 Minus
3R 32079331 3R 16351133..16351231 511..413 495 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:39:02 has no hits.

BO12864.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:56 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 1..498 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:59 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 241..735 17..511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:39 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..739 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:56 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 241..735 17..511 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:07 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
CG10311-RA 245..739 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:07 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16351131..16351230 414..513 98 <- Minus
3R 16351878..16352031 260..413 100 <- Minus
3R 16352089..16352331 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:39 Download gff for BO12864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12177600..12177753 260..413 100 <- Minus
arm_3R 12177811..12178053 17..259 100   Minus
arm_3R 12176853..12176952 414..513 98 <- Minus

BO12864.pep Sequence

Translation from 16 to 529

> BO12864.pep
MPKPLLNSCCLCQSTRNGSVISGILAIVLSIITIVVIFTTRVHFKTIIFD
FIPNDIVKIILVINLCMTILISLLMIIGALKRNHYLMVPWVVLGIMIAIG
LLISVIYTGIVFFIDGYVLTGVLWLIFGLIVCAIMTYCWCVVYSEYANLS
EENERGRYNKQPYRRASFLDH

BO12864.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10311-PB 165 CG10311-PB 1..165 1..165 852 100 Plus
CG10311-PA 165 CG10311-PA 1..165 1..165 852 100 Plus