Clone Sequence Records
BO12865.3prime Sequence
738 bp (737 high quality bases) assembled on 2006-05-08
> BO12865.3prime
ATGGTCTAGAAAGCTTGCATTGTAGCAGCGCCATACCGCCGGCAGCAGGC
GATACGTCCAACTCTCGTTGCTTAGGTTGCAGTTCTTTAGGGCGTAATGC
TCCATGGCGTATAGTGAGATCAGCGTGGCATTTCCCAGGATCAGAGAGAA
CCACAGAAAGATGTTGCCCATCACTTTTGGAGCACTCCGCATTAGGAATA
CCAAGGCAACACCCACGACCCCAAAGAAGAAGAACATCACTGGGAAGAAC
ATTTGCAGGGCAAAGCCGAGAACCTGCTCATGGACCACAGCGGAGATCAT
GAACACTGCCAGCGAGGCGGCCACCTTGGAACCTCGGAACACATGAGTGT
ACATATCCTTGTACACGTACTCGTACAGCCAGTCGTGCACGACGACATTC
CAGTTTCTGTAGTAGCCATCGTAAGTGTGCGACGTCCACCAGTCCTTGTA
GAACATTCGATCACCGAAGCGTAGCAGCTCCGACGTGAAGTTCAGCCACG
AGTGCAGGATTAGGTAGAAGCCGCACAGAAAGATCACCGCGCTGGGCAGC
ATCATGCCGAACAGCTTGAGGATCAGCTGGGAGGGTCCCATTGGTTCCAG
TCCGTACTGTCCGAAGTGCTCGTGGATGTGCCGCTCATGGATGAACGCGT
ACAGGAAGGCTATGGCCACCACCTCCAACAGTCGATTCAGGGCAAACTTC
CAGCGGATGTGGGAGGTGCGCGGGTAGCTGTCTCGGTA
BO12865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-PA | 1680 | CG8112-RA | 958..1677 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 637..1356 | 19..738 | 3600 | 100 | Plus |
| CG8112-RB | 1956 | CG8112-RB | 1147..1866 | 738..19 | 3600 | 100 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 1320..2039 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8714454..8715173 | 738..19 | 3600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:44:50 has no hits.
BO12865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:08 Download gff for
BO12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-PA | 959..1680 | 18..737 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:12 Download gff for
BO12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-PA | 959..1680 | 18..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:46 Download gff for
BO12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RD | 1321..2039 | 19..737 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:57 Download gff for
BO12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RD | 1321..2039 | 19..737 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:57 Download gff for
BO12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8714455..8715173 | 19..737 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:46 Download gff for
BO12865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4540177..4540895 | 19..737 | 100 | | Minus |
BO12865.5prime Sequence
879 bp (837 high quality bases) assembled on 2006-05-08
> BO12865.5prime
GAAGTTATCAGTCGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGG
AGGAGACGCAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTT
CAGAAGTTCCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTG
CATGGTAGAGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCC
ACGAGTTCCCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAAT
CGCGTGACCAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCA
TGCAAATGGCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTC
GTAAGCAGCGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCG
TACCTCACCGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACAT
CTTTTATATTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATT
ACTTTGTTGATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGA
CTGCGCCGCCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTT
CGTCCTGGCGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACA
AACTGAAACCGCACAGTTCTCTCCAGCGCTTTTGGTCGCACAGCTGTCTC
ATCCTGTACATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTCGACTTCGCT
GTGCCTCAAGTTCAACCTGCCCTTTGTGAGTGCGTGTATCCTGTTGCTCG
AGAGCACGCGACTGCTGATGAAGATGCACGCCTTTGTGAGGTACAATGCT
GAGCGCGTTCTGAATGGCAAGGCAAAGAA
BO12865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-PA | 1680 | CG8112-RA | 1..863 | 17..879 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1956 | CG8112-RB | 187..1052 | 14..879 | 4315 | 99.9 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 2038..2691 | 667..14 | 3270 | 100 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 187..840 | 14..667 | 3270 | 100 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 1451..1664 | 879..666 | 1055 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8713119..8713772 | 14..667 | 3270 | 100 | Plus |
| 3R | 32079331 | 3R | 8714146..8714359 | 666..879 | 1055 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:21:06 has no hits.
BO12865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:09 Download gff for
BO12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:13 Download gff for
BO12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:18 Download gff for
BO12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1052 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:01 Download gff for
BO12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1052 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:16:01 Download gff for
BO12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8713117..8713770 | 9..665 | 99 | -> | Plus |
| 3R | 8714146..8714359 | 666..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:18 Download gff for
BO12865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4539868..4540081 | 666..879 | 99 | | Plus |
| arm_3R | 4538839..4539492 | 9..665 | 99 | -> | Plus |
BO12865.complete Sequence
1711 bp assembled on 2008-01-17
GenBank Submission: FJ632610
> BO12865.complete
GAAGTTATCAGTCGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGG
AGGAGACGCAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTT
CAGAAGTTCCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTG
CATGGTAGAGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCC
ACGAGTTCCCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAAT
CGCGTGACCAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCA
TGCAAATGGCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTC
GTAAGCAGCGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCG
TACCTCACCGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACAT
CTTTTATATTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATT
ACTTTGTTGATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGA
CTGCGCCGCCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTT
CGTCCTGGCGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACA
AACTGAAACCGCACAGTTCTCTCCAGCGCTTTTGGTCGCACAGCTGTCTC
ATCCTGTACATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTCGACTTCGCT
GTGCCTCAAGTTCAACCTGCCCTTTGTGAGTGCGTGTATCCTGTTGCTCG
AGAGCACGCGACTGCTGATGAAGATGCACGCCTTTGTGAGGTACAATGCT
GAGCGCGTTCTGAATGGCAAGGCCAAGAAGGAAGATGCGGAGGAGGAGAA
AGAAGGCAGTGAGCGACCGTTTGTGCCGCCGCTGAGCTGTTACACGTACT
TTTTGTTTGCACCCACGCTTATCTACCGAGACAGCTACCCGCGCACCTCC
CACATCCGCTGGAAGTTTGCCCTGAATCGACTGTTGGAGGTGGTGGCCAT
AGCCTTCCTGTACGCGTTCATCCATGAGCGGCACATCCACGAGCACTTCG
GACAGTACGGACTGGAACCAATGGGACCCTCCCAGCTGATCCTCAAGCTG
TTCGGCATGATGCTGCCCAGCGCGGTGATCTTTCTGTGCGGCTTCTACCT
AATCCTGCACTCGTGGCTGAACTTCACGTCGGAGCTGCTACGCTTCGGTG
ATCGAATGTTCTACAAGGACTGGTGGACGTCGCACACTTACGATGGCTAC
TACAGAAACTGGAATGTCGTCGTGCACGACTGGCTGTACGAGTACGTGTA
CAAGGATATGTACACTCATGTGTTCCGAGGTTCCAAGGTGGCCGCCTCGC
TGGCAGTGTTCATGATCTCCGCTGTGGTCCATGAGCAGGTTCTCGGCTTT
GCCCTGCAAATGTTCTTCCCAGTGATGTTCTTCTTCTTTGGGGTCGTGGG
TGTTGCCTTGGTATTCCTAATGCGGAGTGCTCCAAAAGTGATGGGCAACA
TCTTTCTGTGGTTCTCTCTGATCCTGGGAAATGCCACGCTGATCTCACTA
TACGCCATGGAGCATTACGCCCTAAAGAACTGCAACCTAAGCAACGAGAG
TTGGACGTATCGCCTGCTGCCGGCGGTATGGCGCTGCTACAATGCAAGCT
TTCTAGACCAT
BO12865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1680 | CG8112-PB | 1..1677 | 17..1693 | 8370 | 99.9 | Plus |
| CG8112-RD | 669 | CG8112-PD | 1..651 | 17..667 | 3255 | 100 | Plus |
| CG8112-RC | 657 | CG8112-PC | 1..650 | 17..666 | 3250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1956 | CG8112-RB | 187..1866 | 14..1693 | 8385 | 99.9 | Plus |
| CG8112-RD | 2129 | CG8112-RD | 1011..2039 | 665..1693 | 5130 | 99.9 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 637..1664 | 1693..666 | 5125 | 99.9 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 187..840 | 14..667 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8714146..8715173 | 666..1693 | 5125 | 99.9 | Plus |
| 3R | 32079331 | 3R | 8713119..8713772 | 14..667 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:25 has no hits.
BO12865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:06 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 1..1680 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:32 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 326..2002 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:40 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 190..1866 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:06 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 321..2002 | 9..1693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:00 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 190..1866 | 17..1695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:00 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8713122..8713770 | 17..665 | 100 | -> | Plus |
| 3R | 8714146..8715173 | 666..1695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:40 Download gff for
BO12865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4538844..4539492 | 17..665 | 100 | -> | Plus |
| arm_3R | 4539868..4540895 | 666..1695 | 99 | | Plus |
BO12865.pep Sequence
Translation from 16 to 1711
> BO12865.pep
MAAERQEKRGEEETQPRLPDLGFVRDKLQKFQSKMLTDFEQRLSCMVEDV
LQDLRQRELRAHEFPNFERSDRKSTWHNRVTSQAPADVSDSTNGHANGTH
PRPPIQSETSARKQRRQLPEKVFVARESYLTALLQVEHMRTIYHIFYIIL
VMFLLNVICYDYFVDGRFDLGLGTFRGGLRRLHWVMGVWLLEHVFVLALY
FAFRGWALVRHKLKPHSSLQRFWSHSCLILYISSQLVFCFVSTSLCLKFN
LPFVSACILLLESTRLLMKMHAFVRYNAERVLNGKAKKEDAEEEKEGSER
PFVPPLSCYTYFLFAPTLIYRDSYPRTSHIRWKFALNRLLEVVAIAFLYA
FIHERHIHEHFGQYGLEPMGPSQLILKLFGMMLPSAVIFLCGFYLILHSW
LNFTSELLRFGDRMFYKDWWTSHTYDGYYRNWNVVVHDWLYEYVYKDMYT
HVFRGSKVAASLAVFMISAVVHEQVLGFALQMFFPVMFFFFGVVGVALVF
LMRSAPKVMGNIFLWFSLILGNATLISLYAMEHYALKNCNLSNESWTYRL
LPAVWRCYNASFLDH
BO12865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-PB | 559 | CG8112-PB | 1..559 | 1..559 | 2986 | 100 | Plus |
| CG8112-PD | 222 | CG8112-PD | 1..220 | 1..220 | 1149 | 98.6 | Plus |
| CG8112-PC | 218 | CG8112-PC | 1..216 | 1..216 | 1144 | 100 | Plus |
| mdy-PE | 565 | CG31991-PE | 297..545 | 281..529 | 350 | 35.8 | Plus |
| mdy-PC | 565 | CG31991-PC | 297..545 | 281..529 | 350 | 35.8 | Plus |
