Clone BO12866 Report

Search the DGRC for BO12866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG1888-RA
Protein status:BO12866.pep: validated full length
Sequenced Size:1150

Clone Sequence Records

BO12866.3prime Sequence

812 bp (754 high quality bases) assembled on 2006-05-08

> BO12866.3prime
ATGGTCTAGAAAGCTTGCATCGGAGCGATCGGGACTGGAGATTTGGTCGC
CGGCGAAGTTCACACTAGCACTAGCATCGTGTCCTTGAACCGTGGGAATC
GATCTTATCAGCTCGGAACGGCGTCGTTTGAGTTCCTGGCGCGACGAACT
GAGCCTCTTGCTTCGCTTCATGTTGGTGAATCTCACGTAGATCTTACCCC
TTCGCTCGGTGCGGTAATAGCTGAGCTGTTCCTGCGGGAAAAGCTGCAGT
ATCTCGCGTTCCAGCAAGTGACTCCTCTGCAGGGTCAGGTGCATCTGGTT
CTCCTCGTAGTAGCTGCACACTAGTTGGATGAGCAAAAGGCGCTGCACGG
CGTCCAGCGGATCGTTCTGGCCAATACGCTCCAGCAAGCTCTGGGCTTTC
ATACCCGAGGATCGCAGAATGCCCAAAATGCTAACTTCTTGGTCAGGAGT
GGCAGTTGCATCCTCCTTGTTGCCTGAGGTTCCTCCTGAAGACCCAGCCG
CCAATACAGCTTCAGGCTTCCTAGTTTGCTGCATCGGCATCAGCTCCTGT
TTGACCATCATTATGTCGTCGGTTATCTGCGCAGGCGGATGGACCAAAGG
CAATGGAAAGGGAACTGACATTTCCCTGGGATCACTGAGGGCCACCAGCG
ATTCTGCTGGTATTGTCTTGACCAGATCTTCAGGCTTGTGCAATTCTTCC
TGCTCTGACGGCTGTTCCATGTGCAACGGCGATTGCTCCTGACATTGCGA
TTGGCCCAGATTCTCCGGAAAGCGACAGCCGGAGCAGTGGCTCGACCCCT
GGCCCTGGGCGC

BO12866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PA 1119 CG1888-RA 323..1116 812..19 3920 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 2535 CG1888-RD 1555..2348 812..19 3940 99.7 Minus
CG1888-RC 4527 CG1888-RC 378..1171 812..19 3940 99.7 Minus
CG1888-RB 2400 CG1888-RB 1420..2213 812..19 3940 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545359..9546152 19..812 3940 99.7 Plus
Blast to na_te.dros performed 2015-02-01 04:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 401..450 327..376 115 70 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1826..1869 607..565 109 75 Minus

BO12866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:10 Download gff for BO12866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-PA 323..1119 16..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:14 Download gff for BO12866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-PA 323..1119 16..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:54 Download gff for BO12866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1420..2219 12..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:13 Download gff for BO12866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1420..2219 12..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:13 Download gff for BO12866.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9545353..9546152 12..812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:54 Download gff for BO12866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5432858..5433657 12..812 99   Plus

BO12866.5prime Sequence

810 bp (748 high quality bases) assembled on 2006-05-08

> BO12866.5prime
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAGAACGATCCGCTGGACG
CCGTGCAGCG

BO12866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PA 1119 CG1888-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 2535 CG1888-RD 1227..2026 10..810 3980 99.9 Plus
CG1888-RC 4527 CG1888-RC 50..849 10..810 3980 99.9 Plus
CG1888-RB 2400 CG1888-RB 1092..1891 10..810 3980 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545681..9546298 810..193 3090 100 Minus
2R 25286936 2R 9546726..9546903 194..17 890 100 Minus
Blast to na_te.dros performed 2015-02-12 04:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1826..1869 544..586 109 75 Plus

BO12866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:11 Download gff for BO12866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:15 Download gff for BO12866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:53 Download gff for BO12866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1086..1891 1..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:55 Download gff for BO12866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1086..1891 1..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:55 Download gff for BO12866.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9545681..9546296 195..810 100 <- Minus
2R 9546726..9546915 1..194 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:53 Download gff for BO12866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5433186..5433801 195..810 100 <- Minus
arm_2R 5434231..5434420 1..194 97   Minus

BO12866.complete Sequence

1150 bp assembled on 2006-10-11

GenBank Submission: FJ632611

> BO12866.complete
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAGAACGATCCGCTGGACG
CCGTGCAGCGCCTTTTGCTCATCCAACTAGTGTGCAGCTACTACGAGGAG
AACCAGATGCACCTGACCCTGCAGAGGAGTCACTTGCTGGAACGCGAGAT
ACTGCAGCTTTTCCCGCAGGAACAGCTCAGCTATTACCGCACCGAGCGAA
GGGGTAAGATCTACGTGAGATTCACCAACATGAAGCGAAGCAAGAGGCTC
AGTTCGTCGCGCCAGGAACTCAAACGACGCCGTTCCGAGCTGATAAGATC
GATTCCCACGGTTCAAGGACACGATGCTAGTGCTAGTGTGAACTTCGCCG
GCGACCAAATCTCCAGTCCCGATCGCTCCGATGCAAGCTTTCTAGACCAT

BO12866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 1119 CG1888-PD 1..1116 17..1132 5580 100 Plus
CG1888-RC 1119 CG1888-PC 1..1116 17..1132 5580 100 Plus
CG1888-RB 1119 CG1888-PB 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 2535 CG1888-RD 1233..2348 17..1132 5580 100 Plus
CG1888-RC 4527 CG1888-RC 56..1171 17..1132 5580 100 Plus
CG1888-RB 2400 CG1888-RB 1098..2213 17..1132 5580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545359..9546298 1132..193 4700 100 Minus
2R 25286936 2R 9546726..9546903 194..17 890 100 Minus
Blast to na_te.dros performed 2014-11-28 00:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 401..450 824..775 115 70 Minus

BO12866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:43 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1119 17..1135 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:02 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 40..1173 1..1139 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:13 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1098..2213 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:43 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 40..1173 1..1139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:26 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1098..2213 17..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:26 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9545356..9546296 195..1134 99 <- Minus
2R 9546726..9546903 17..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:13 Download gff for BO12866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5432861..5433801 195..1134 99 <- Minus
arm_2R 5434231..5434408 17..194 100   Minus

BO12866.pep Sequence

Translation from 16 to 1150

> BO12866.pep
MNPCTSSPPQMPRGSGSVENCNLESDGLQLLEMAGKEDYEELRDLLQSWD
VADLLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRR
WLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQEQSPLHMEQPSEQEELHK
PEDLVKTIPAESLVALSDPREMSVPFPLPLVHPPAQITDDIMMVKQELMP
MQQTRKPEAVLAAGSSGGTSGNKEDATATPDQEVSILGILRSSGMKAQSL
LERIGQNDPLDAVQRLLLIQLVCSYYEENQMHLTLQRSHLLEREILQLFP
QEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQELKRRRSELIRSIPTVQ
GHDASASVNFAGDQISSPDRSDASFLDH

BO12866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PD 372 CG1888-PD 1..372 1..372 1927 100 Plus
CG1888-PC 372 CG1888-PC 1..372 1..372 1927 100 Plus
CG1888-PB 372 CG1888-PB 1..372 1..372 1927 100 Plus
CG1888-PA 372 CG1888-PA 1..372 1..372 1927 100 Plus