Clone Sequence Records
BO12866.3prime Sequence
812 bp (754 high quality bases) assembled on 2006-05-08
> BO12866.3prime
ATGGTCTAGAAAGCTTGCATCGGAGCGATCGGGACTGGAGATTTGGTCGC
CGGCGAAGTTCACACTAGCACTAGCATCGTGTCCTTGAACCGTGGGAATC
GATCTTATCAGCTCGGAACGGCGTCGTTTGAGTTCCTGGCGCGACGAACT
GAGCCTCTTGCTTCGCTTCATGTTGGTGAATCTCACGTAGATCTTACCCC
TTCGCTCGGTGCGGTAATAGCTGAGCTGTTCCTGCGGGAAAAGCTGCAGT
ATCTCGCGTTCCAGCAAGTGACTCCTCTGCAGGGTCAGGTGCATCTGGTT
CTCCTCGTAGTAGCTGCACACTAGTTGGATGAGCAAAAGGCGCTGCACGG
CGTCCAGCGGATCGTTCTGGCCAATACGCTCCAGCAAGCTCTGGGCTTTC
ATACCCGAGGATCGCAGAATGCCCAAAATGCTAACTTCTTGGTCAGGAGT
GGCAGTTGCATCCTCCTTGTTGCCTGAGGTTCCTCCTGAAGACCCAGCCG
CCAATACAGCTTCAGGCTTCCTAGTTTGCTGCATCGGCATCAGCTCCTGT
TTGACCATCATTATGTCGTCGGTTATCTGCGCAGGCGGATGGACCAAAGG
CAATGGAAAGGGAACTGACATTTCCCTGGGATCACTGAGGGCCACCAGCG
ATTCTGCTGGTATTGTCTTGACCAGATCTTCAGGCTTGTGCAATTCTTCC
TGCTCTGACGGCTGTTCCATGTGCAACGGCGATTGCTCCTGACATTGCGA
TTGGCCCAGATTCTCCGGAAAGCGACAGCCGGAGCAGTGGCTCGACCCCT
GGCCCTGGGCGC
BO12866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-PA | 1119 | CG1888-RA | 323..1116 | 812..19 | 3920 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 2535 | CG1888-RD | 1555..2348 | 812..19 | 3940 | 99.7 | Minus |
CG1888-RC | 4527 | CG1888-RC | 378..1171 | 812..19 | 3940 | 99.7 | Minus |
CG1888-RB | 2400 | CG1888-RB | 1420..2213 | 812..19 | 3940 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9545359..9546152 | 19..812 | 3940 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-01 04:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 401..450 | 327..376 | 115 | 70 | Plus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1826..1869 | 607..565 | 109 | 75 | Minus |
BO12866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:10 Download gff for
BO12866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-PA | 323..1119 | 16..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:14 Download gff for
BO12866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-PA | 323..1119 | 16..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:54 Download gff for
BO12866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1420..2219 | 12..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:13 Download gff for
BO12866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1420..2219 | 12..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:13 Download gff for
BO12866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9545353..9546152 | 12..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:54 Download gff for
BO12866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5432858..5433657 | 12..812 | 99 | | Plus |
BO12866.5prime Sequence
810 bp (748 high quality bases) assembled on 2006-05-08
> BO12866.5prime
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAGAACGATCCGCTGGACG
CCGTGCAGCG
BO12866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-PA | 1119 | CG1888-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 2535 | CG1888-RD | 1227..2026 | 10..810 | 3980 | 99.9 | Plus |
CG1888-RC | 4527 | CG1888-RC | 50..849 | 10..810 | 3980 | 99.9 | Plus |
CG1888-RB | 2400 | CG1888-RB | 1092..1891 | 10..810 | 3980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9545681..9546298 | 810..193 | 3090 | 100 | Minus |
2R | 25286936 | 2R | 9546726..9546903 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1826..1869 | 544..586 | 109 | 75 | Plus |
BO12866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:11 Download gff for
BO12866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:15 Download gff for
BO12866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:53 Download gff for
BO12866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1086..1891 | 1..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:55 Download gff for
BO12866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1086..1891 | 1..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:55 Download gff for
BO12866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9545681..9546296 | 195..810 | 100 | <- | Minus |
2R | 9546726..9546915 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:53 Download gff for
BO12866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5433186..5433801 | 195..810 | 100 | <- | Minus |
arm_2R | 5434231..5434420 | 1..194 | 97 | | Minus |
BO12866.complete Sequence
1150 bp assembled on 2006-10-11
GenBank Submission: FJ632611
> BO12866.complete
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAGAACGATCCGCTGGACG
CCGTGCAGCGCCTTTTGCTCATCCAACTAGTGTGCAGCTACTACGAGGAG
AACCAGATGCACCTGACCCTGCAGAGGAGTCACTTGCTGGAACGCGAGAT
ACTGCAGCTTTTCCCGCAGGAACAGCTCAGCTATTACCGCACCGAGCGAA
GGGGTAAGATCTACGTGAGATTCACCAACATGAAGCGAAGCAAGAGGCTC
AGTTCGTCGCGCCAGGAACTCAAACGACGCCGTTCCGAGCTGATAAGATC
GATTCCCACGGTTCAAGGACACGATGCTAGTGCTAGTGTGAACTTCGCCG
GCGACCAAATCTCCAGTCCCGATCGCTCCGATGCAAGCTTTCTAGACCAT
BO12866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 1119 | CG1888-PD | 1..1116 | 17..1132 | 5580 | 100 | Plus |
CG1888-RC | 1119 | CG1888-PC | 1..1116 | 17..1132 | 5580 | 100 | Plus |
CG1888-RB | 1119 | CG1888-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 2535 | CG1888-RD | 1233..2348 | 17..1132 | 5580 | 100 | Plus |
CG1888-RC | 4527 | CG1888-RC | 56..1171 | 17..1132 | 5580 | 100 | Plus |
CG1888-RB | 2400 | CG1888-RB | 1098..2213 | 17..1132 | 5580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9545359..9546298 | 1132..193 | 4700 | 100 | Minus |
2R | 25286936 | 2R | 9546726..9546903 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 401..450 | 824..775 | 115 | 70 | Minus |
BO12866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:43 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RA | 1..1119 | 17..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:02 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RA | 40..1173 | 1..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:13 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1098..2213 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:43 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RA | 40..1173 | 1..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:26 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1098..2213 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:26 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9545356..9546296 | 195..1134 | 99 | <- | Minus |
2R | 9546726..9546903 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:13 Download gff for
BO12866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5432861..5433801 | 195..1134 | 99 | <- | Minus |
arm_2R | 5434231..5434408 | 17..194 | 100 | | Minus |
BO12866.pep Sequence
Translation from 16 to 1150
> BO12866.pep
MNPCTSSPPQMPRGSGSVENCNLESDGLQLLEMAGKEDYEELRDLLQSWD
VADLLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRR
WLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQEQSPLHMEQPSEQEELHK
PEDLVKTIPAESLVALSDPREMSVPFPLPLVHPPAQITDDIMMVKQELMP
MQQTRKPEAVLAAGSSGGTSGNKEDATATPDQEVSILGILRSSGMKAQSL
LERIGQNDPLDAVQRLLLIQLVCSYYEENQMHLTLQRSHLLEREILQLFP
QEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQELKRRRSELIRSIPTVQ
GHDASASVNFAGDQISSPDRSDASFLDH
BO12866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-PD | 372 | CG1888-PD | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PC | 372 | CG1888-PC | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PB | 372 | CG1888-PB | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PA | 372 | CG1888-PA | 1..372 | 1..372 | 1927 | 100 | Plus |