Clone BO12867 Report

Search the DGRC for BO12867

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG11777-RA
Protein status:BO12867.pep: validated full length
Sequenced Size:517

Clone Sequence Records

BO12867.3prime Sequence

515 bp (514 high quality bases) assembled on 2006-05-08

> BO12867.3prime
ATGGTCTAGAAAGCTTGCCGTCGCCAAAGGATTGGCATGTATAGTTACTC
CATTGATCTTCTTGTCCACATGGGGACGATAGTTCTTGGGATTGACGGGC
AGTTTCTCCAGTTCATCCAGGGCATCGAATCCATCGATCACACGGCCAAA
GAGCGTGTACTTCAAGTCAAGATTTGGCTGGGCGGCATAGGTAATGAAGA
ACTGGCTGGCATTGGCGTTCGGTCCGTTGTTGGCCATGGAAACCATTCCT
CGATCAGTGTGCTTAATGGTCTCCTTGAATTCGTCGTCGAACTTCTGGCC
CCAAATGGACTGTCCATTCTTTCCGGTGTTCGTAGGATCTCCAGTTTGGA
CAATAAATCCCTTGATGTTTCGGATGAAGACGCAGCCGCTGTAATAGTCG
CTCGCACACAGGGCGAGGAAATTTTCGCAGGCCTTGGGGCAGGCATCGCA
GAAGAGCTCTATTTTGAGGTCACCCACGTCGGTGTGCAGCGTTACAGACA
TGTCGACTGATAACT

BO12867.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-PA 486 CG11777-RA 1..483 501..19 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..501 501..19 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469443 263..19 1225 100 Minus
2R 25286936 2R 10468700..10468937 499..262 1190 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:38:29 has no hits.

BO12867.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:12 Download gff for BO12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-PA 1..486 16..501 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:17 Download gff for BO12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-PA 1..486 16..501 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:33 Download gff for BO12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 19..501 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:56 Download gff for BO12867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 19..501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:56 Download gff for BO12867.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10468698..10468937 262..502 99 -> Minus
2R 10469201..10469443 19..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:33 Download gff for BO12867.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356203..6356442 262..502 99 -> Minus
arm_2R 6356706..6356948 19..261 100   Minus

BO12867.5prime Sequence

515 bp (514 high quality bases) assembled on 2006-05-08

> BO12867.5prime
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGG
CAAGCTTTCTAGACC

BO12867.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-PA 486 CG11777-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..501 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469443 255..499 1225 100 Plus
2R 25286936 2R 10468700..10468937 19..256 1190 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:49:35 has no hits.

BO12867.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:13 Download gff for BO12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-PA 1..486 17..502 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:18 Download gff for BO12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-PA 1..486 17..502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:29 Download gff for BO12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 17..499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:36 Download gff for BO12867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 17..499 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:36 Download gff for BO12867.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10468698..10468937 16..256 99 -> Plus
2R 10469201..10469443 257..499 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:29 Download gff for BO12867.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356203..6356442 16..256 99 -> Plus
arm_2R 6356706..6356948 257..499 100   Plus

BO12867.complete Sequence

517 bp assembled on 2006-10-11

GenBank Submission: FJ632612

> BO12867.complete
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGG
CAAGCTTTCTAGACCAT

BO12867.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 486 CG11777-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..501 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469443 255..499 1225 100 Plus
2R 25286936 2R 10468700..10468937 19..256 1190 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:53:51 has no hits.

BO12867.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:44 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 1..486 17..502 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:04 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 16..498 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:58 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:44 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 16..498 17..499 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:29 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:29 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10468699..10468937 17..256 99 -> Plus
2R 10469201..10469443 257..501 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:58 Download gff for BO12867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356204..6356442 17..256 99 -> Plus
arm_2R 6356706..6356948 257..501 99   Plus

BO12867.pep Sequence

Translation from 16 to 517

> BO12867.pep
MSVTLHTDVGDLKIELFCDACPKACENFLALCASDYYSGCVFIRNIKGFI
VQTGDPTNTGKNGQSIWGQKFDDEFKETIKHTDRGMVSMANNGPNANASQ
FFITYAAQPNLDLKYTLFGRVIDGFDALDELEKLPVNPKNYRPHVDKKIN
GVTIHANPLATASFLDH

BO12867.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-PA 161 CG11777-PA 1..161 1..161 868 100 Plus
CG7747-PA 517 CG7747-PA 282..441 3..163 442 50.3 Plus
CG3511-PB 637 CG3511-PB 483..634 2..155 365 49.4 Plus
CG3511-PA 637 CG3511-PA 483..634 2..155 365 49.4 Plus
Cypl-PA 176 CG13892-PA 23..162 3..143 319 44.7 Plus