Clone Sequence Records
BO12867.3prime Sequence
515 bp (514 high quality bases) assembled on 2006-05-08
> BO12867.3prime
ATGGTCTAGAAAGCTTGCCGTCGCCAAAGGATTGGCATGTATAGTTACTC
CATTGATCTTCTTGTCCACATGGGGACGATAGTTCTTGGGATTGACGGGC
AGTTTCTCCAGTTCATCCAGGGCATCGAATCCATCGATCACACGGCCAAA
GAGCGTGTACTTCAAGTCAAGATTTGGCTGGGCGGCATAGGTAATGAAGA
ACTGGCTGGCATTGGCGTTCGGTCCGTTGTTGGCCATGGAAACCATTCCT
CGATCAGTGTGCTTAATGGTCTCCTTGAATTCGTCGTCGAACTTCTGGCC
CCAAATGGACTGTCCATTCTTTCCGGTGTTCGTAGGATCTCCAGTTTGGA
CAATAAATCCCTTGATGTTTCGGATGAAGACGCAGCCGCTGTAATAGTCG
CTCGCACACAGGGCGAGGAAATTTTCGCAGGCCTTGGGGCAGGCATCGCA
GAAGAGCTCTATTTTGAGGTCACCCACGTCGGTGTGCAGCGTTACAGACA
TGTCGACTGATAACT
BO12867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-PA | 486 | CG11777-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 701 | CG11777-RA | 19..501 | 501..19 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10469199..10469443 | 263..19 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 10468700..10468937 | 499..262 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:38:29 has no hits.
BO12867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:12 Download gff for
BO12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-PA | 1..486 | 16..501 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:17 Download gff for
BO12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-PA | 1..486 | 16..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:33 Download gff for
BO12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..501 | 19..501 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:56 Download gff for
BO12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..501 | 19..501 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:56 Download gff for
BO12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10468698..10468937 | 262..502 | 99 | -> | Minus |
2R | 10469201..10469443 | 19..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:33 Download gff for
BO12867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6356203..6356442 | 262..502 | 99 | -> | Minus |
arm_2R | 6356706..6356948 | 19..261 | 100 | | Minus |
BO12867.5prime Sequence
515 bp (514 high quality bases) assembled on 2006-05-08
> BO12867.5prime
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGG
CAAGCTTTCTAGACC
BO12867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-PA | 486 | CG11777-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 701 | CG11777-RA | 19..501 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10469199..10469443 | 255..499 | 1225 | 100 | Plus |
2R | 25286936 | 2R | 10468700..10468937 | 19..256 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:49:35 has no hits.
BO12867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:13 Download gff for
BO12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-PA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:18 Download gff for
BO12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-PA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:29 Download gff for
BO12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..501 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:36 Download gff for
BO12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..501 | 17..499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:36 Download gff for
BO12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10468698..10468937 | 16..256 | 99 | -> | Plus |
2R | 10469201..10469443 | 257..499 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:29 Download gff for
BO12867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6356203..6356442 | 16..256 | 99 | -> | Plus |
arm_2R | 6356706..6356948 | 257..499 | 100 | | Plus |
BO12867.complete Sequence
517 bp assembled on 2006-10-11
GenBank Submission: FJ632612
> BO12867.complete
GAAGTTATCAGTCGACATGTCTGTAACGCTGCACACCGACGTGGGTGACC
TCAAAATAGAGCTCTTCTGCGATGCCTGCCCCAAGGCCTGCGAAAATTTC
CTCGCCCTGTGTGCGAGCGACTATTACAGCGGCTGCGTCTTCATCCGAAA
CATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGA
ATGGACAGTCCATTTGGGGCCAGAAGTTCGACGACGAATTCAAGGAGACC
ATTAAGCACACTGATCGAGGAATGGTTTCCATGGCCAACAACGGACCGAA
CGCCAATGCCAGCCAGTTCTTCATTACCTATGCCGCCCAGCCAAATCTTG
ACTTGAAGTACACGCTCTTTGGCCGTGTGATCGATGGATTCGATGCCCTG
GATGAACTGGAGAAACTGCCCGTCAATCCCAAGAACTATCGTCCCCATGT
GGACAAGAAGATCAATGGAGTAACTATACATGCCAATCCTTTGGCGACGG
CAAGCTTTCTAGACCAT
BO12867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 486 | CG11777-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-RA | 701 | CG11777-RA | 19..501 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10469199..10469443 | 255..499 | 1225 | 100 | Plus |
2R | 25286936 | 2R | 10468700..10468937 | 19..256 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:53:51 has no hits.
BO12867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:44 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:04 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 16..498 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:58 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..501 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:44 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 16..498 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:29 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11777-RA | 19..501 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:29 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10468699..10468937 | 17..256 | 99 | -> | Plus |
2R | 10469201..10469443 | 257..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:58 Download gff for
BO12867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6356204..6356442 | 17..256 | 99 | -> | Plus |
arm_2R | 6356706..6356948 | 257..501 | 99 | | Plus |
BO12867.pep Sequence
Translation from 16 to 517
> BO12867.pep
MSVTLHTDVGDLKIELFCDACPKACENFLALCASDYYSGCVFIRNIKGFI
VQTGDPTNTGKNGQSIWGQKFDDEFKETIKHTDRGMVSMANNGPNANASQ
FFITYAAQPNLDLKYTLFGRVIDGFDALDELEKLPVNPKNYRPHVDKKIN
GVTIHANPLATASFLDH
BO12867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11777-PA | 161 | CG11777-PA | 1..161 | 1..161 | 868 | 100 | Plus |
CG7747-PA | 517 | CG7747-PA | 282..441 | 3..163 | 442 | 50.3 | Plus |
CG3511-PB | 637 | CG3511-PB | 483..634 | 2..155 | 365 | 49.4 | Plus |
CG3511-PA | 637 | CG3511-PA | 483..634 | 2..155 | 365 | 49.4 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..162 | 3..143 | 319 | 44.7 | Plus |