Clone Sequence Records
BO12869.3prime Sequence
755 bp (739 high quality bases) assembled on 2006-05-08
> BO12869.3prime
ATGGTCTAGAAAGCTTGCCTTGACCTTGTTCACAGGCAGGTACGTGGCAC
TAGGCGCTGCGGCTGGTGGTGGAATATATCCTGCCGAAGGAGCCTCCAGT
TCGGCGCTTACACTTCCGCTGGAAGGCCGACGCTCATCAATCAGCTGCAC
CTGCTGCTGTTGCTGTTGCTGCTGCTGCTCTTGCTGTTGCTGCACTTTGG
TGGCAAAGTCCAGGACTGGTGCCACGCCTCCGTTGTAGGAGGTGCTGGCT
CCACCCAGACGCTCGTACTCCTGCTGAATGGTACGCTGGGCATTGATGGC
GTCCTGCTGGGTGCGGTACTTGACGAAATGCACCTCCGGCTTGCTGGCGC
TCACATGGTTCAGGTTCTGCAGCTGGTTGGCCAGGCTGGACAGATCACCC
TGTTTGGTCAGGACATAGATGGCGGTCTGCTGCTCGGCAGCCTGCTTGGC
CAAGGCCAGAGCGGCGTTCTCCAGACCCTTATTCTCGGGGGCCCTGATGA
AAACCACACGGAGGTTCTTCTTCAGAGTAGCAGCCAGATCACTGACACTC
TTATTATCCTCAAAATCGGCCTCGGGAGCGGAGTAGGTGAAGAACTCCTT
GTTAAATTCGGTGTTTACAGGAGCGTAGTTAGTGGAATAAGATCCCCCGG
ACAGGGAACCACTAGAAAGGGAACCACCAGAAATGGAGCCACCTGAGATG
GAGCCACCTGAGATGGAGCCACCTGAGATCGAGCCTCCAGAGATGGAGCC
TCCAG
BO12869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5480-PA | 852 | CG5480-RA | 113..849 | 755..19 | 3685 | 100 | Minus |
| CG5480-PA | 852 | CG5480-RA | 112..200 | 741..653 | 220 | 89.8 | Minus |
| CG5468-PA | 867 | CG5468-RA | 514..580 | 474..408 | 210 | 92.5 | Minus |
| CG6460-PA | 744 | CG6460-RA | 379..448 | 477..408 | 200 | 91.4 | Minus |
| CG6478-PA | 861 | CG6478-RA | 499..568 | 477..408 | 200 | 91.4 | Minus |
| CG5471-PA | 924 | CG5471-RA | 487..556 | 477..408 | 200 | 91.4 | Minus |
| CG5476-PA | 930 | CG5476-RA | 562..631 | 477..408 | 200 | 91.4 | Minus |
| CG6452-PA | 690 | CG6452-RA | 304..366 | 474..412 | 190 | 92 | Minus |
| CG6447-PB | 840 | CG6447-RB | 508..550 | 450..408 | 165 | 95.3 | Minus |
| CG6447-PA | 858 | CG6447-RA | 526..568 | 450..408 | 165 | 95.3 | Minus |
| CG14250-PA | 738 | CG14250-RA | 486..520 | 343..309 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 1031 | CG5480-RA | 202..938 | 755..19 | 3685 | 100 | Minus |
| TwdlM-RA | 1030 | CG5468-RA | 512..831 | 525..206 | 365 | 75.6 | Minus |
| TwdlK-RA | 840 | CG6460-RA | 360..599 | 513..274 | 360 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26656702..26657438 | 755..19 | 3685 | 100 | Minus |
| 3R | 32079331 | 3R | 26628126..26628365 | 274..513 | 360 | 76.7 | Plus |
| 3R | 32079331 | 3R | 26619706..26620025 | 525..206 | 340 | 73.8 | Minus |
| 3R | 32079331 | 3R | 26630307..26630425 | 513..395 | 325 | 84.9 | Minus |
| 3R | 32079331 | 3R | 26632459..26632570 | 510..399 | 305 | 84.8 | Minus |
| 3R | 32079331 | 3R | 26634173..26634491 | 524..206 | 305 | 73 | Minus |
| 3R | 32079331 | 3R | 26622847..26622954 | 394..501 | 300 | 85.2 | Plus |
| 3R | 32079331 | 3R | 26626320..26626433 | 400..513 | 285 | 83.3 | Plus |
| 3R | 32079331 | 3R | 26624962..26625064 | 399..501 | 275 | 84.5 | Plus |
| 3R | 32079331 | 3R | 26640455..26640669 | 525..311 | 265 | 74.9 | Minus |
| 3R | 32079331 | 3R | 26656680..26656757 | 747..670 | 210 | 84.6 | Minus |
| 3R | 32079331 | 3R | 26692806..26692886 | 263..343 | 180 | 81.5 | Plus |
Blast to na_te.dros performed 2015-02-11 10:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1566 | 204..144 | 197 | 80.3 | Minus |
BO12869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:16 Download gff for
BO12869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5480-PA | 113..852 | 18..755 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:23 Download gff for
BO12869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5480-PA | 113..852 | 18..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:09 Download gff for
BO12869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 202..938 | 19..755 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:44 Download gff for
BO12869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 202..938 | 19..755 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:44 Download gff for
BO12869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26656702..26657438 | 19..755 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:09 Download gff for
BO12869.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22482424..22483160 | 19..755 | 100 | | Minus |
BO12869.5prime Sequence
787 bp (759 high quality bases) assembled on 2006-05-08
> BO12869.5prime
GAAGTTATCAGTCGACATGCGTGGATTTATTATTTTTGCTGTCTTGGCTG
TGGCTCGCGCTGATGTAGGCGGCTATAACTATGGAGCTGGCATTGGATCA
GGCGGATCCATCTCGGGAGGCTCTCTGTCTGGAGGCTCCATCTCTGGAGG
CTCGATCTCAGGTGGCTCCATCTCAGGTGGCTCCATCTCAGGTGGCTCCA
TTTCTGGTGGTTCCCTTTCTAGTGGTTCCCTGTCCGGGGGATCTTATTCC
ACTAACTACGCTCCTGTAAACACCGAATTTAACAAGGAGTTCTTCACCTA
CTCCGCTCCCGAGGCCGATTTTGAGGATAATAAGAGTGTCAGTGATCTGG
CTGCTACTCTGAAGAAGAACCTCCGTGTGGTTTTCATCAGGGCCCCCGAG
AATAAGGGTCTGGAGAACGCCGCTCTGGCCTTGGCCAAGCAGGCTGCCGA
GCAGCAGACCGCCATCTATGTCCTGACCAAACAGGGTGATCTGTCCAGCC
TGGCCAACCAGCTGCAGAACCTGAACCATGTGAGCGCCAGCAAGCCGGAG
GTGCATTTCGTCAAGTACCGCACCCAGCAGGACGCCATCAATGCCCAGCG
TACCATTCAGCAGGAGTACGAGCGTCTGGGTGGAGCCAGCACCTCCTACA
ACGGAGGCGTGGCACCAGTCCTGGACTTTGCCACCAAAGTGCAGCAACAG
CAAGAGCAGCAGCAGCAACAGCAACAGCAGCAGGTGCAGCTGATTGATGA
GCGTCGGCCTTCCAGCGGAAGTGTAAGCGCCCAACTG
BO12869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5480-PA | 852 | CG5480-RA | 1..771 | 17..787 | 3830 | 99.8 | Plus |
| CG5468-PA | 867 | CG5468-RA | 514..580 | 410..476 | 210 | 92.5 | Plus |
| CG6460-PA | 744 | CG6460-RA | 379..448 | 407..476 | 200 | 91.4 | Plus |
| CG6478-PA | 861 | CG6478-RA | 499..568 | 407..476 | 200 | 91.4 | Plus |
| CG5471-PA | 924 | CG5471-RA | 487..556 | 407..476 | 200 | 91.4 | Plus |
| CG5476-PA | 930 | CG5476-RA | 562..631 | 407..476 | 200 | 91.4 | Plus |
| CG6452-PA | 690 | CG6452-RA | 304..366 | 410..472 | 190 | 92 | Plus |
| CG6447-PB | 840 | CG6447-RB | 508..550 | 434..476 | 165 | 95.3 | Plus |
| CG6447-PA | 858 | CG6447-RA | 526..568 | 434..476 | 165 | 95.3 | Plus |
| CG14250-PA | 738 | CG14250-RA | 486..520 | 541..575 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 1031 | CG5480-RA | 90..860 | 17..787 | 3840 | 99.9 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 512..831 | 359..678 | 365 | 75.6 | Plus |
| TwdlK-RA | 840 | CG6460-RA | 360..599 | 371..610 | 360 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26656605..26657360 | 32..787 | 3765 | 99.9 | Plus |
| 3R | 32079331 | 3R | 26628126..26628365 | 610..371 | 360 | 76.7 | Minus |
| 3R | 32079331 | 3R | 26619706..26620025 | 359..678 | 340 | 73.8 | Plus |
| 3R | 32079331 | 3R | 26630307..26630425 | 371..489 | 325 | 84.9 | Plus |
| 3R | 32079331 | 3R | 26632459..26632570 | 374..485 | 305 | 84.8 | Plus |
| 3R | 32079331 | 3R | 26634173..26634491 | 360..678 | 305 | 73 | Plus |
| 3R | 32079331 | 3R | 26622847..26622954 | 490..383 | 300 | 85.2 | Minus |
| 3R | 32079331 | 3R | 26626320..26626433 | 484..371 | 285 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26624962..26625064 | 485..383 | 275 | 84.5 | Minus |
| 3R | 32079331 | 3R | 26640455..26640669 | 359..573 | 265 | 74.9 | Plus |
| 3R | 32079331 | 3R | 26656710..26656787 | 107..184 | 210 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26656680..26656757 | 137..214 | 210 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26692806..26692886 | 621..541 | 180 | 81.5 | Minus |
Blast to na_te.dros performed 2015-02-09 09:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1566 | 680..740 | 197 | 80.3 | Plus |
BO12869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:17 Download gff for
BO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5480-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:24 Download gff for
BO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5480-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:35 Download gff for
BO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 85..860 | 12..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:52 Download gff for
BO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 85..860 | 12..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:52 Download gff for
BO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26656605..26657360 | 32..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:35 Download gff for
BO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22482327..22483082 | 32..787 | 99 | | Plus |
BO12869.complete Sequence
883 bp assembled on 2006-10-11
GenBank Submission: FJ632613
> BO12869.complete
GAAGTTATCAGTCGACATGCGTGGATTTATTATTTTTGCTGTCTTGGCTG
TGGCTCGCGCTGATGTAGGCGGCTATAACTATGGAGCTGGCATTGGATCA
GGCGGATCCATCTCGGGAGGCTCTCTGTCTGGAGGCTCCATCTCTGGAGG
CTCGATCTCAGGTGGCTCCATCTCAGGTGGCTCCATCTCAGGTGGCTCCA
TTTCTGGTGGTTCCCTTTCTAGTGGTTCCCTGTCCGGGGGATCTTATTCC
ACTAACTACGCTCCTGTAAACACCGAATTTAACAAGGAGTTCTTCACCTA
CTCCGCTCCCGAGGCCGATTTTGAGGATAATAAGAGTGTCAGTGATCTGG
CTGCTACTCTGAAGAAGAACCTCCGTGTGGTTTTCATCAGGGCCCCCGAG
AATAAGGGTCTGGAGAACGCCGCTCTGGCCTTGGCCAAGCAGGCTGCCGA
GCAGCAGACCGCCATCTATGTCCTGACCAAACAGGGTGATCTGTCCAGCC
TGGCCAACCAGCTGCAGAACCTGAACCATGTGAGCGCCAGCAAGCCGGAG
GTGCATTTCGTCAAGTACCGCACCCAGCAGGACGCCATCAATGCCCAGCG
TACCATTCAGCAGGAGTACGAGCGTCTGGGTGGAGCCAGCACCTCCTACA
ACGGAGGCGTGGCACCAGTCCTGGACTTTGCCACCAAAGTGCAGCAACAG
CAAGAGCAGCAGCAGCAACAGCAACAGCAGCAGGTGCAGCTGATTGATGA
GCGTCGGCCTTCCAGCGGAAGTGTAAGCGCCGAACTGGAGGCTCCTTCGG
CAGGATATATTCCACCACCAGCCGCAGCGCCTAGTGCCACGTACCTGCCT
GTGAACAAGGTCAAGGCAAGCTTTCTAGACCAT
BO12869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 852 | CG5480-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
| TwdlK-RA | 744 | CG6460-PA | 343..582 | 371..610 | 360 | 76.7 | Plus |
| TwdlM-RA | 867 | CG5468-PA | 463..782 | 359..678 | 340 | 73.8 | Plus |
| Tb-RA | 852 | CG5480-PA | 91..168 | 137..214 | 210 | 84.6 | Plus |
| Tb-RA | 852 | CG5480-PA | 121..198 | 107..184 | 210 | 84.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 1031 | CG5480-RA | 90..938 | 17..865 | 4245 | 100 | Plus |
| TwdlK-RA | 840 | CG6460-RA | 360..599 | 371..610 | 360 | 76.7 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 512..831 | 359..678 | 340 | 73.8 | Plus |
| Tb-RA | 1031 | CG5480-RA | 180..257 | 137..214 | 210 | 84.6 | Plus |
| Tb-RA | 1031 | CG5480-RA | 210..287 | 107..184 | 210 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26656605..26657438 | 32..865 | 4170 | 100 | Plus |
| 3R | 32079331 | 3R | 26628126..26628365 | 610..371 | 360 | 76.7 | Minus |
| 3R | 32079331 | 3R | 26619706..26620025 | 359..678 | 340 | 73.8 | Plus |
| 3R | 32079331 | 3R | 26630307..26630425 | 371..489 | 325 | 84.9 | Plus |
| 3R | 32079331 | 3R | 26632459..26632570 | 374..485 | 305 | 84.8 | Plus |
| 3R | 32079331 | 3R | 26634173..26634491 | 360..678 | 305 | 73 | Plus |
| 3R | 32079331 | 3R | 26622847..26622954 | 490..383 | 300 | 85.2 | Minus |
| 3R | 32079331 | 3R | 26626320..26626433 | 484..371 | 285 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26624962..26625064 | 485..383 | 275 | 84.5 | Minus |
| 3R | 32079331 | 3R | 26640455..26640669 | 359..573 | 265 | 74.9 | Plus |
| 3R | 32079331 | 3R | 26656680..26656757 | 137..214 | 210 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26656710..26656787 | 107..184 | 210 | 84.6 | Plus |
Blast to na_te.dros performed 2014-11-27 14:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1566 | 680..740 | 197 | 80.3 | Plus |
BO12869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:55 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:58 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 80..933 | 12..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:20 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 90..938 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:55 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 80..933 | 12..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:31 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 90..938 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:31 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26656605..26657438 | 32..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:20 Download gff for
BO12869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22482327..22483160 | 32..867 | 99 | | Plus |
BO12869.pep Sequence
Translation from 16 to 883
> BO12869.pep
MRGFIIFAVLAVARADVGGYNYGAGIGSGGSISGGSLSGGSISGGSISGG
SISGGSISGGSISGGSLSSGSLSGGSYSTNYAPVNTEFNKEFFTYSAPEA
DFEDNKSVSDLAATLKKNLRVVFIRAPENKGLENAALALAKQAAEQQTAI
YVLTKQGDLSSLANQLQNLNHVSASKPEVHFVKYRTQQDAINAQRTIQQE
YERLGGASTSYNGGVAPVLDFATKVQQQQEQQQQQQQQQVQLIDERRPSS
GSVSAELEAPSAGYIPPPAAAPSATYLPVNKVKASFLDH
BO12869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-PA | 283 | CG5480-PA | 1..283 | 1..283 | 1409 | 100 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 1..269 | 1..233 | 623 | 51.1 | Plus |
| TwdlB-PA | 286 | CG6478-PA | 1..269 | 1..233 | 616 | 50.7 | Plus |
| TwdlM-PA | 288 | CG5468-PA | 1..273 | 1..233 | 606 | 50 | Plus |
| TwdlL-PB | 279 | CG6447-PB | 3..263 | 9..233 | 600 | 51.1 | Plus |
