Clone BO12870 Report

Search the DGRC for BO12870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG11699-RA
Protein status:BO12870.pep: validated full length
Sequenced Size:472

Clone Sequence Records

BO12870.3prime Sequence

470 bp (469 high quality bases) assembled on 2006-05-08

> BO12870.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGTTCCAGGCTGCCAGGTATTTCATGA
GGTCCGTGAGACTCTCGAAATCGGTGCGGCTGGCTGGTGGTTCGTCCTTG
GTGATTCTTGGCAGTGCATTGCCCATCTTGAGGCGGAACTCCTGGAAATC
CTTGGCTCCGGATAGCTTCCAGAAGCCGTAGCAGAAGGCGCCGGTGCCCA
TCACGGCGTACAGTGTGCCCCAGCCCAGCGCCCGCAGGGCCAGGGTGGCG
CCCTCGTCCATCAGGATCATGCCTTGCCGCGTTCCAGCCTGCTGGAGGAC
CTTGCTATCCGTCTTCTTGGCGGTGGCCAGCGTGCGCGAGAAGCCGAACA
GAGCGGACACCCCGCCCACCAAACCCAGAAAGGCGGCGGCCTGGATGCGG
AACTTGCGCTCCTTCTCGGCGGCCACTGCATCCGCGCTGGTGCCGGCCTC
GCTCATGTCGACTGATAACT

BO12870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-PA 441 CG11699-RA 1..438 456..19 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-RA 640 CG11699-RA 90..527 456..19 2190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11570866..11571108 390..148 1215 100 Minus
X 23542271 X 11571169..11571297 147..19 645 100 Minus
X 23542271 X 11570710..11570776 456..390 335 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:10:43 has no hits.

BO12870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:18 Download gff for BO12870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-PA 1..441 15..456 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:25 Download gff for BO12870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-PA 1..441 15..456 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:54 Download gff for BO12870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 84..536 8..463 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:14 Download gff for BO12870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 84..536 8..463 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:14 Download gff for BO12870.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11570704..11570776 390..463 94 -> Minus
X 11570867..11571108 148..389 100 -> Minus
X 11571169..11571306 8..147 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:54 Download gff for BO12870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11464737..11464809 390..463 94 -> Minus
arm_X 11464900..11465141 148..389 100 -> Minus
arm_X 11465202..11465339 8..147 96   Minus

BO12870.5prime Sequence

470 bp (469 high quality bases) assembled on 2006-05-08

> BO12870.5prime
GAAGTTATCAGTCGACATGAGCGAGGCCGGCACCAGCGCGGATGCAGTGG
CCGCCGAGAAGGAGCGCAAGTTCCGCATCCAGGCCGCCGCCTTTCTGGGT
TTGGTGGGCGGGGTGTCCGCTCTGTTCGGCTTCTCGCGCACGCTGGCCAC
CGCCAAGAAGACGGATAGCAAGGTCCTCCAGCAGGCTGGAACGCGGCAAG
GCATGATCCTGATGGACGAGGGCGCCACCCTGGCCCTGCGGGCGCTGGGC
TGGGGCACACTGTACGCCGTGATGGGCACCGGCGCCTTCTGCTACGGCTT
CTGGAAGCTATCCGGAGCCAAGGATTTCCAGGAGTTCCGCCTCAAGATGG
GCAATGCACTGCCAAGAATCACCAAGGACGAACCACCAGCCAGCCGCACC
GATTTCGAGAGTCTCACGGACCTCATGAAATACCTGGCAGCCTGGAACAA
GGAAGCAAGCTTTCTAGACC

BO12870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-PA 441 CG11699-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-RA 640 CG11699-RA 90..527 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11570866..11571108 83..325 1215 100 Plus
X 23542271 X 11571169..11571297 326..454 645 100 Plus
X 23542271 X 11570710..11570776 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:05:38 has no hits.

BO12870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:19 Download gff for BO12870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-PA 1..441 17..458 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:27 Download gff for BO12870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-PA 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:27 Download gff for BO12870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 84..536 10..465 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:42 Download gff for BO12870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 84..536 10..465 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:42 Download gff for BO12870.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11570704..11570776 10..83 94 -> Plus
X 11570867..11571108 84..325 100 -> Plus
X 11571169..11571306 326..465 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:27 Download gff for BO12870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11464737..11464809 10..83 94 -> Plus
arm_X 11464900..11465141 84..325 100 -> Plus
arm_X 11465202..11465339 326..465 96   Plus

BO12870.complete Sequence

472 bp assembled on 2006-10-11

GenBank Submission: FJ632614

> BO12870.complete
GAAGTTATCAGTCGACATGAGCGAGGCCGGCACCAGCGCGGATGCAGTGG
CCGCCGAGAAGGAGCGCAAGTTCCGCATCCAGGCCGCCGCCTTTCTGGGT
TTGGTGGGCGGGGTGTCCGCTCTGTTCGGCTTCTCGCGCACGCTGGCCAC
CGCCAAGAAGACGGATAGCAAGGTCCTCCAGCAGGCTGGAACGCGGCAAG
GCATGATCCTGATGGACGAGGGCGCCACCCTGGCCCTGCGGGCGCTGGGC
TGGGGCACACTGTACGCCGTGATGGGCACCGGCGCCTTCTGCTACGGCTT
CTGGAAGCTATCCGGAGCCAAGGATTTCCAGGAGTTCCGCCTCAAGATGG
GCAATGCACTGCCAAGAATCACCAAGGACGAACCACCAGCCAGCCGCACC
GATTTCGAGAGTCTCACGGACCTCATGAAATACCTGGCAGCCTGGAACAA
GGAAGCAAGCTTTCTAGACCAT

BO12870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-RA 441 CG11699-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-RA 640 CG11699-RA 90..527 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11570866..11571108 83..325 1215 100 Plus
X 23542271 X 11571169..11571297 326..454 645 100 Plus
X 23542271 X 11570710..11570776 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:11:36 has no hits.

BO12870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:45 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:07 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 81..533 10..465 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:46 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 90..527 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:45 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 81..533 10..465 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:02 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
CG11699-RA 90..527 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:02 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
X 11570710..11570776 17..83 100 -> Plus
X 11570867..11571108 84..325 100 -> Plus
X 11571169..11571297 326..456 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:46 Download gff for BO12870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11464743..11464809 17..83 100 -> Plus
arm_X 11464900..11465141 84..325 100 -> Plus
arm_X 11465202..11465330 326..456 98   Plus

BO12870.pep Sequence

Translation from 16 to 472

> BO12870.pep
MSEAGTSADAVAAEKERKFRIQAAAFLGLVGGVSALFGFSRTLATAKKTD
SKVLQQAGTRQGMILMDEGATLALRALGWGTLYAVMGTGAFCYGFWKLSG
AKDFQEFRLKMGNALPRITKDEPPASRTDFESLTDLMKYLAAWNKEASFL
DH

BO12870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11699-PA 146 CG11699-PA 1..146 1..146 743 100 Plus