Clone Sequence Records
BO12870.3prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-08
> BO12870.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGTTCCAGGCTGCCAGGTATTTCATGA
GGTCCGTGAGACTCTCGAAATCGGTGCGGCTGGCTGGTGGTTCGTCCTTG
GTGATTCTTGGCAGTGCATTGCCCATCTTGAGGCGGAACTCCTGGAAATC
CTTGGCTCCGGATAGCTTCCAGAAGCCGTAGCAGAAGGCGCCGGTGCCCA
TCACGGCGTACAGTGTGCCCCAGCCCAGCGCCCGCAGGGCCAGGGTGGCG
CCCTCGTCCATCAGGATCATGCCTTGCCGCGTTCCAGCCTGCTGGAGGAC
CTTGCTATCCGTCTTCTTGGCGGTGGCCAGCGTGCGCGAGAAGCCGAACA
GAGCGGACACCCCGCCCACCAAACCCAGAAAGGCGGCGGCCTGGATGCGG
AACTTGCGCTCCTTCTCGGCGGCCACTGCATCCGCGCTGGTGCCGGCCTC
GCTCATGTCGACTGATAACT
BO12870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-PA | 441 | CG11699-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-RA | 640 | CG11699-RA | 90..527 | 456..19 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11570866..11571108 | 390..148 | 1215 | 100 | Minus |
X | 23542271 | X | 11571169..11571297 | 147..19 | 645 | 100 | Minus |
X | 23542271 | X | 11570710..11570776 | 456..390 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:10:43 has no hits.
BO12870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:18 Download gff for
BO12870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-PA | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:25 Download gff for
BO12870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-PA | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:54 Download gff for
BO12870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 84..536 | 8..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:14 Download gff for
BO12870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 84..536 | 8..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:14 Download gff for
BO12870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11570704..11570776 | 390..463 | 94 | -> | Minus |
X | 11570867..11571108 | 148..389 | 100 | -> | Minus |
X | 11571169..11571306 | 8..147 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:54 Download gff for
BO12870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11464737..11464809 | 390..463 | 94 | -> | Minus |
arm_X | 11464900..11465141 | 148..389 | 100 | -> | Minus |
arm_X | 11465202..11465339 | 8..147 | 96 | | Minus |
BO12870.5prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-08
> BO12870.5prime
GAAGTTATCAGTCGACATGAGCGAGGCCGGCACCAGCGCGGATGCAGTGG
CCGCCGAGAAGGAGCGCAAGTTCCGCATCCAGGCCGCCGCCTTTCTGGGT
TTGGTGGGCGGGGTGTCCGCTCTGTTCGGCTTCTCGCGCACGCTGGCCAC
CGCCAAGAAGACGGATAGCAAGGTCCTCCAGCAGGCTGGAACGCGGCAAG
GCATGATCCTGATGGACGAGGGCGCCACCCTGGCCCTGCGGGCGCTGGGC
TGGGGCACACTGTACGCCGTGATGGGCACCGGCGCCTTCTGCTACGGCTT
CTGGAAGCTATCCGGAGCCAAGGATTTCCAGGAGTTCCGCCTCAAGATGG
GCAATGCACTGCCAAGAATCACCAAGGACGAACCACCAGCCAGCCGCACC
GATTTCGAGAGTCTCACGGACCTCATGAAATACCTGGCAGCCTGGAACAA
GGAAGCAAGCTTTCTAGACC
BO12870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-PA | 441 | CG11699-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-RA | 640 | CG11699-RA | 90..527 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11570866..11571108 | 83..325 | 1215 | 100 | Plus |
X | 23542271 | X | 11571169..11571297 | 326..454 | 645 | 100 | Plus |
X | 23542271 | X | 11570710..11570776 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:05:38 has no hits.
BO12870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:19 Download gff for
BO12870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:27 Download gff for
BO12870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:27 Download gff for
BO12870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 84..536 | 10..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:42 Download gff for
BO12870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 84..536 | 10..465 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:42 Download gff for
BO12870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11570704..11570776 | 10..83 | 94 | -> | Plus |
X | 11570867..11571108 | 84..325 | 100 | -> | Plus |
X | 11571169..11571306 | 326..465 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:27 Download gff for
BO12870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11464737..11464809 | 10..83 | 94 | -> | Plus |
arm_X | 11464900..11465141 | 84..325 | 100 | -> | Plus |
arm_X | 11465202..11465339 | 326..465 | 96 | | Plus |
BO12870.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ632614
> BO12870.complete
GAAGTTATCAGTCGACATGAGCGAGGCCGGCACCAGCGCGGATGCAGTGG
CCGCCGAGAAGGAGCGCAAGTTCCGCATCCAGGCCGCCGCCTTTCTGGGT
TTGGTGGGCGGGGTGTCCGCTCTGTTCGGCTTCTCGCGCACGCTGGCCAC
CGCCAAGAAGACGGATAGCAAGGTCCTCCAGCAGGCTGGAACGCGGCAAG
GCATGATCCTGATGGACGAGGGCGCCACCCTGGCCCTGCGGGCGCTGGGC
TGGGGCACACTGTACGCCGTGATGGGCACCGGCGCCTTCTGCTACGGCTT
CTGGAAGCTATCCGGAGCCAAGGATTTCCAGGAGTTCCGCCTCAAGATGG
GCAATGCACTGCCAAGAATCACCAAGGACGAACCACCAGCCAGCCGCACC
GATTTCGAGAGTCTCACGGACCTCATGAAATACCTGGCAGCCTGGAACAA
GGAAGCAAGCTTTCTAGACCAT
BO12870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-RA | 441 | CG11699-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-RA | 640 | CG11699-RA | 90..527 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11570866..11571108 | 83..325 | 1215 | 100 | Plus |
X | 23542271 | X | 11571169..11571297 | 326..454 | 645 | 100 | Plus |
X | 23542271 | X | 11570710..11570776 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:11:36 has no hits.
BO12870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:45 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:07 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 81..533 | 10..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:46 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 90..527 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:45 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 81..533 | 10..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:02 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11699-RA | 90..527 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:02 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11570710..11570776 | 17..83 | 100 | -> | Plus |
X | 11570867..11571108 | 84..325 | 100 | -> | Plus |
X | 11571169..11571297 | 326..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:46 Download gff for
BO12870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11464743..11464809 | 17..83 | 100 | -> | Plus |
arm_X | 11464900..11465141 | 84..325 | 100 | -> | Plus |
arm_X | 11465202..11465330 | 326..456 | 98 | | Plus |
BO12870.pep Sequence
Translation from 16 to 472
> BO12870.pep
MSEAGTSADAVAAEKERKFRIQAAAFLGLVGGVSALFGFSRTLATAKKTD
SKVLQQAGTRQGMILMDEGATLALRALGWGTLYAVMGTGAFCYGFWKLSG
AKDFQEFRLKMGNALPRITKDEPPASRTDFESLTDLMKYLAAWNKEASFL
DH
BO12870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11699-PA | 146 | CG11699-PA | 1..146 | 1..146 | 743 | 100 | Plus |