Clone Sequence Records
BO12871.3prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-08
> BO12871.3prime
ATGGTCTAGAAAGCTTGCTTTTCCCATGCGCTGAATGGACCACTCCTGCT
GGCACAACGGGCATCGGTTGTTCTGCTTGACCCACAGCGACATGCAGCAG
TGGTGAAAGGAGTGGTTGCACTCGCCCCAAACCACCACGCAGTCCTGGCG
ACCCATCACATCCCGCTTGTTGTCCGCCTGGCAGCGAAGGCAGGAATCCA
TAACTTGAACACGGCAAATGGCACAGATATCGCATTCCACATCCCAACTC
CACATTGCAACTGCGTTCCATTTCTTCAGCGTAAACATTTTTTCCGGTTT
GCCGGCATCTCCGTCGTCTGTGGGCCTATCCACTGAGTTTTCTGGATCAT
CAGCCATGTCGACTGATAACT
BO12871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8998-PA | 342 | Roc2-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 360..19 | 1710 | 100 | Minus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 19..198 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 11678206..11678368 | 198..360 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:40:54 has no hits.
BO12871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:20 Download gff for
BO12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:28 Download gff for
BO12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8998-PA | 1..342 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:50 Download gff for
BO12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 15..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:03 Download gff for
BO12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 15..360 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:03 Download gff for
BO12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652901..11653083 | 15..197 | 98 | <- | Plus |
| 2R | 11678206..11678368 | 198..360 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:50 Download gff for
BO12871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540406..7540588 | 15..197 | 98 | <- | Plus |
| arm_2R | 7565711..7565873 | 198..360 | 100 | | Plus |
BO12871.5prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-08
> BO12871.5prime
GAAGTTATCAGTCGACATGGCTGATGATCCAGAAAACTCAGTGGATAGGC
CCACAGACGACGGAGATGCCGGCAAACCGGAAAAAATGTTTACGCTGAAG
AAATGGAACGCAGTTGCAATGTGGAGTTGGGATGTGGAATGCGATATCTG
TGCCATTTGCCGTGTTCAAGTTATGGATTCCTGCCTTCGCTGCCAGGCGG
ACAACAAGCGGGATGTGATGGGTCGCCAGGACTGCGTGGTGGTTTGGGGC
GAGTGCAACCACTCCTTTCACCACTGCTGCATGTCGCTGTGGGTCAAGCA
GAACAACCGATGCCCGTTGTGCCAGCAGGAGTGGTCCATTCAGCGCATGG
GAAAAGCAAGCTTTCTAGACC
BO12871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8998-PA | 342 | Roc2-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 14..355 | 1710 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 14..355 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 355..176 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 176..14 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:02:33 has no hits.
BO12871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:21 Download gff for
BO12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:29 Download gff for
BO12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8998-PA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:51 Download gff for
BO12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 14..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:25 Download gff for
BO12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 14..359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:25 Download gff for
BO12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652901..11653083 | 177..359 | 98 | <- | Minus |
| 2R | 11678206..11678368 | 14..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:51 Download gff for
BO12871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540406..7540588 | 177..359 | 98 | <- | Minus |
| arm_2R | 7565711..7565873 | 14..176 | 100 | | Minus |
BO12871.complete Sequence
373 bp assembled on 2006-10-11
GenBank Submission: FJ632615
> BO12871.complete
GAAGTTATCAGTCGACATGGCTGATGATCCAGAAAACTCAGTGGATAGGC
CCACAGACGACGGAGATGCCGGCAAACCGGAAAAAATGTTTACGCTGAAG
AAATGGAACGCAGTTGCAATGTGGAGTTGGGATGTGGAATGCGATATCTG
TGCCATTTGCCGTGTTCAAGTTATGGATTCCTGCCTTCGCTGCCAGGCGG
ACAACAAGCGGGATGTGATGGGTCGCCAGGACTGCGTGGTGGTTTGGGGC
GAGTGCAACCACTCCTTTCACCACTGCTGCATGTCGCTGTGGGTCAAGCA
GAACAACCGATGCCCGTTGTGCCAGCAGGAGTGGTCCATTCAGCGCATGG
GAAAAGCAAGCTTTCTAGACCAT
BO12871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 342 | CG8998-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
| Roc2-RA | 342 | CG8998-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 14..355 | 1710 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 14..355 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 355..176 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 176..14 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:00:04 has no hits.
BO12871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:46 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 1..342 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:42 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 173..507 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:24 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 175..509 | 17..351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:46 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 170..514 | 14..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:45 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 175..509 | 17..351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:45 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652909..11653083 | 177..351 | 100 | <- | Minus |
| 2R | 11678206..11678365 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:24 Download gff for
BO12871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7565711..7565870 | 17..176 | 100 | | Minus |
| arm_2R | 7540414..7540588 | 177..351 | 100 | <- | Minus |
BO12871.pep Sequence
Translation from 16 to 373
> BO12871.pep
MADDPENSVDRPTDDGDAGKPEKMFTLKKWNAVAMWSWDVECDICAICRV
QVMDSCLRCQADNKRDVMGRQDCVVVWGECNHSFHHCCMSLWVKQNNRCP
LCQQEWSIQRMGKASFLDH
BO12871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-PB | 113 | CG8998-PB | 1..113 | 1..113 | 658 | 100 | Plus |
| Roc2-PA | 113 | CG8998-PA | 1..113 | 1..113 | 658 | 100 | Plus |
| Roc1a-PD | 108 | CG16982-PD | 5..107 | 6..112 | 274 | 43.9 | Plus |
| Roc1a-PA | 108 | CG16982-PA | 5..107 | 6..112 | 274 | 43.9 | Plus |
| Roc1b-PA | 122 | CG16988-PA | 15..122 | 4..113 | 263 | 42.3 | Plus |
