Clone BO12872 Report

Search the DGRC for BO12872

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG11134-RA
Protein status:BO12872.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO12872.3prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-08

> BO12872.3prime
ATGGTCTAGAAAGCTTGCTGAGCTCTCGAACTTTTCCGGATCGATTCCGG
CCTTCTTCATTTCCACGGCAATGGAGAAGAGATAGTCATAGCATTCCGAC
ATGGTTTTGGCCTTCTCCCAGTTCTGTCCCCAAACGTAGACGCCGTGTCG
TCGAACCAGGATCGCACTGCAGCCCGGATACTCCATCATGGCGGCGTACA
TACTGTCGGCCAGGTCGCGTTCAAAGGGTGTGTTCTCGATGATCGGTACG
ACGAGCTCCTCGTCGTAGCGCAAATATCGCTTGTCCGCCTCATCGTAGAC
GCCCTTGATCATCTCCAAGTGGGTGCAGCGGAAGGTTTTCCCTGGCCACA
GGAGCGTGGCCATTACGGCGTGCTGCGAATGGGTGTGGATGACGGCTCCC
GCCTGCCGATGCTGATAGGCCAGCATAAAGAGCGGCGTACATTGGCTCTT
CTTCAGGCCCTTGATCTCAGGCGGCAGTTGCAGATCCTTGCCGGTTATAT
CCTGCACGAAGAGATCCTCCGGCTGCATTCGCTCCTTCTGGACGCCCGAC
GGTGCTATGTAGATCTCATCGTTGTACTTAATGCTCATGCCACCTCCTGT
GCCGGTCACCCATCCCAAATGATAGAATTGCCTGCATAGCGAGGGAATCA
AGTGGCGAGGATGCTCCGCCGGCAAGTCTTTGAAGATCGAGAGGGCCATG
TCGACTGATAACT

BO12872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-PA 684 CG11134-RA 1..681 699..19 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 913 CG11134-RB 119..803 703..19 3410 99.9 Minus
CG11134-RA 901 CG11134-RA 107..791 703..19 3410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13738440..13738912 571..99 2365 100 Minus
X 23542271 X 13738245..13738376 703..572 645 99.2 Minus
X 23542271 X 13738980..13739067 106..19 425 98.9 Minus
Blast to na_te.dros performed on 2015-02-03 07:23:28 has no hits.

BO12872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:22 Download gff for BO12872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-PA 1..684 15..699 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:31 Download gff for BO12872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-PA 1..684 15..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:21 Download gff for BO12872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 99..795 14..713 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:39 Download gff for BO12872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 99..795 14..713 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:39 Download gff for BO12872.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13738237..13738376 572..713 97 -> Minus
X 13738440..13738910 101..571 100 -> Minus
X 13738986..13739071 14..100 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:21 Download gff for BO12872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13632270..13632409 572..713 97 -> Minus
arm_X 13632473..13632943 101..571 100 -> Minus
arm_X 13633019..13633104 14..100 97   Minus

BO12872.5prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-08

> BO12872.5prime
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCAGCA
AGCTTTCTAGACC

BO12872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-PA 684 CG11134-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 913 CG11134-RB 119..803 13..697 3410 99.9 Plus
CG11134-RA 901 CG11134-RA 107..791 13..697 3410 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13738440..13738912 145..617 2365 100 Plus
X 23542271 X 13738245..13738376 13..144 645 99.2 Plus
X 23542271 X 13738980..13739067 610..697 425 98.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:39:38 has no hits.

BO12872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:23 Download gff for BO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:32 Download gff for BO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:40 Download gff for BO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 100..795 5..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:26 Download gff for BO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 100..795 5..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:26 Download gff for BO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13738238..13738376 5..144 97 -> Plus
X 13738440..13738910 145..615 100 -> Plus
X 13738986..13739071 616..702 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:40 Download gff for BO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13632271..13632409 5..144 97 -> Plus
arm_X 13632473..13632943 145..615 100 -> Plus
arm_X 13633019..13633104 616..702 97   Plus

BO12872.complete Sequence

715 bp assembled on 2006-10-11

GenBank Submission: FJ632616

> BO12872.complete
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCAGCA
AGCTTTCTAGACCAT

BO12872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 684 CG11134-PB 1..681 17..697 3405 100 Plus
CG11134-RA 684 CG11134-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 913 CG11134-RB 119..803 13..697 3410 99.9 Plus
CG11134-RA 901 CG11134-RA 107..791 13..697 3410 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13738440..13738912 145..617 2365 100 Plus
X 23542271 X 13738245..13738376 13..144 645 99.2 Plus
X 23542271 X 13738980..13739067 610..697 425 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:33 has no hits.

BO12872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:47 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:11 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 96..791 5..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:49 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 111..791 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:47 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 96..791 5..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:39 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 111..791 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:39 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
X 13738249..13738376 17..144 100 -> Plus
X 13738440..13738910 145..615 100 -> Plus
X 13738986..13739067 616..699 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:49 Download gff for BO12872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13632282..13632409 17..144 100 -> Plus
arm_X 13632473..13632943 145..615 100 -> Plus
arm_X 13633019..13633100 616..699 97   Plus

BO12872.pep Sequence

Translation from 16 to 715

> BO12872.pep
MALSIFKDLPAEHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAP
SGVQKERMQPEDLFVQDITGKDLQLPPEIKGLKKSQCTPLFMLAYQHRQA
GAVIHTHSQHAVMATLLWPGKTFRCTHLEMIKGVYDEADKRYLRYDEELV
VPIIENTPFERDLADSMYAAMMEYPGCSAILVRRHGVYVWGQNWEKAKTM
SECYDYLFSIAVEMKKAGIDPEKFESSASFLDH

BO12872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-PB 227 CG11134-PB 1..227 1..227 1221 100 Plus
CG11134-PA 227 CG11134-PA 1..227 1..227 1221 100 Plus