Clone Sequence Records
BO12872.3prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-08
> BO12872.3prime
ATGGTCTAGAAAGCTTGCTGAGCTCTCGAACTTTTCCGGATCGATTCCGG
CCTTCTTCATTTCCACGGCAATGGAGAAGAGATAGTCATAGCATTCCGAC
ATGGTTTTGGCCTTCTCCCAGTTCTGTCCCCAAACGTAGACGCCGTGTCG
TCGAACCAGGATCGCACTGCAGCCCGGATACTCCATCATGGCGGCGTACA
TACTGTCGGCCAGGTCGCGTTCAAAGGGTGTGTTCTCGATGATCGGTACG
ACGAGCTCCTCGTCGTAGCGCAAATATCGCTTGTCCGCCTCATCGTAGAC
GCCCTTGATCATCTCCAAGTGGGTGCAGCGGAAGGTTTTCCCTGGCCACA
GGAGCGTGGCCATTACGGCGTGCTGCGAATGGGTGTGGATGACGGCTCCC
GCCTGCCGATGCTGATAGGCCAGCATAAAGAGCGGCGTACATTGGCTCTT
CTTCAGGCCCTTGATCTCAGGCGGCAGTTGCAGATCCTTGCCGGTTATAT
CCTGCACGAAGAGATCCTCCGGCTGCATTCGCTCCTTCTGGACGCCCGAC
GGTGCTATGTAGATCTCATCGTTGTACTTAATGCTCATGCCACCTCCTGT
GCCGGTCACCCATCCCAAATGATAGAATTGCCTGCATAGCGAGGGAATCA
AGTGGCGAGGATGCTCCGCCGGCAAGTCTTTGAAGATCGAGAGGGCCATG
TCGACTGATAACT
BO12872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-PA | 684 | CG11134-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..803 | 703..19 | 3410 | 99.9 | Minus |
CG11134-RA | 901 | CG11134-RA | 107..791 | 703..19 | 3410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 571..99 | 2365 | 100 | Minus |
X | 23542271 | X | 13738245..13738376 | 703..572 | 645 | 99.2 | Minus |
X | 23542271 | X | 13738980..13739067 | 106..19 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:23:28 has no hits.
BO12872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:22 Download gff for
BO12872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:31 Download gff for
BO12872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:21 Download gff for
BO12872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 99..795 | 14..713 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:39 Download gff for
BO12872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 99..795 | 14..713 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:39 Download gff for
BO12872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738237..13738376 | 572..713 | 97 | -> | Minus |
X | 13738440..13738910 | 101..571 | 100 | -> | Minus |
X | 13738986..13739071 | 14..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:21 Download gff for
BO12872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632270..13632409 | 572..713 | 97 | -> | Minus |
arm_X | 13632473..13632943 | 101..571 | 100 | -> | Minus |
arm_X | 13633019..13633104 | 14..100 | 97 | | Minus |
BO12872.5prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-08
> BO12872.5prime
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCAGCA
AGCTTTCTAGACC
BO12872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-PA | 684 | CG11134-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..803 | 13..697 | 3410 | 99.9 | Plus |
CG11134-RA | 901 | CG11134-RA | 107..791 | 13..697 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 145..617 | 2365 | 100 | Plus |
X | 23542271 | X | 13738245..13738376 | 13..144 | 645 | 99.2 | Plus |
X | 23542271 | X | 13738980..13739067 | 610..697 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:39:38 has no hits.
BO12872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:23 Download gff for
BO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:32 Download gff for
BO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:40 Download gff for
BO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 100..795 | 5..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:26 Download gff for
BO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 100..795 | 5..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:26 Download gff for
BO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738238..13738376 | 5..144 | 97 | -> | Plus |
X | 13738440..13738910 | 145..615 | 100 | -> | Plus |
X | 13738986..13739071 | 616..702 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:40 Download gff for
BO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632271..13632409 | 5..144 | 97 | -> | Plus |
arm_X | 13632473..13632943 | 145..615 | 100 | -> | Plus |
arm_X | 13633019..13633104 | 616..702 | 97 | | Plus |
BO12872.complete Sequence
715 bp assembled on 2006-10-11
GenBank Submission: FJ632616
> BO12872.complete
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCAGCA
AGCTTTCTAGACCAT
BO12872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 684 | CG11134-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
CG11134-RA | 684 | CG11134-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..803 | 13..697 | 3410 | 99.9 | Plus |
CG11134-RA | 901 | CG11134-RA | 107..791 | 13..697 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 145..617 | 2365 | 100 | Plus |
X | 23542271 | X | 13738245..13738376 | 13..144 | 645 | 99.2 | Plus |
X | 23542271 | X | 13738980..13739067 | 610..697 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:33 has no hits.
BO12872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:47 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:11 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 96..791 | 5..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:49 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 111..791 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:47 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 96..791 | 5..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:39 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 111..791 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:39 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738249..13738376 | 17..144 | 100 | -> | Plus |
X | 13738440..13738910 | 145..615 | 100 | -> | Plus |
X | 13738986..13739067 | 616..699 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:49 Download gff for
BO12872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632282..13632409 | 17..144 | 100 | -> | Plus |
arm_X | 13632473..13632943 | 145..615 | 100 | -> | Plus |
arm_X | 13633019..13633100 | 616..699 | 97 | | Plus |
BO12872.pep Sequence
Translation from 16 to 715
> BO12872.pep
MALSIFKDLPAEHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAP
SGVQKERMQPEDLFVQDITGKDLQLPPEIKGLKKSQCTPLFMLAYQHRQA
GAVIHTHSQHAVMATLLWPGKTFRCTHLEMIKGVYDEADKRYLRYDEELV
VPIIENTPFERDLADSMYAAMMEYPGCSAILVRRHGVYVWGQNWEKAKTM
SECYDYLFSIAVEMKKAGIDPEKFESSASFLDH
BO12872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-PB | 227 | CG11134-PB | 1..227 | 1..227 | 1221 | 100 | Plus |
CG11134-PA | 227 | CG11134-PA | 1..227 | 1..227 | 1221 | 100 | Plus |