Clone Sequence Records
BO12873.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO12873.5prime
GAAGTTATCAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACAC
GGGACATGTTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCC
ACATACATGCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACA
TGGTGCTGTACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCG
GGCGCATATTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAA
CGCGTAAGAGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCA
CATCCACCACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAA
ATGAGCGATTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTG
AAGCGCCAGCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGA
AGAACCGATTGCTCTGGCCCCGATTCCATACGAATTCATTGCCGCAAGCT
TTCTAGACC
BO12873.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12775-PA | 480 | RpL21-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL21-RC | 656 | CG12775-RC | 97..573 | 17..493 | 2385 | 100 | Plus |
| RpL21-RB | 662 | CG12775-RB | 68..544 | 17..493 | 2385 | 100 | Plus |
| RpL21-RA | 614 | CG12775-RA | 55..531 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22247229..22247705 | 493..17 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:37:24 has no hits.
BO12873.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:25 Download gff for
BO12873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:35 Download gff for
BO12873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12775-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:55 Download gff for
BO12873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:10 Download gff for
BO12873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 17..502 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:10 Download gff for
BO12873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22247218..22247705 | 17..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:55 Download gff for
BO12873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22247218..22247705 | 17..502 | 99 | | Minus |
BO12873.3prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO12873.3prime
ATGGTCTAGAAAGCTTGCGGCAATGAATTCGTATGGAATCGGGGCCAGAG
CAATCGGTTCTTCAAGTTTCTTAACAAAGTGCGCCTTCTTCGGCTGTTCC
GGCTGGCGCTTCAGACTGACCCATTGTCCCTTTTCCTTCGCCTCCTTCAG
CAATCGCTCATTTTCCTTTACGCGGCGCAAAAAATCTTCGCGGCACTTGG
AGTGGTGGATGTGCTCAATGCGCACATTGACCCGCTTAGCAAGGATTTTG
CCTCTTACGCGTTTGTTTACTATTACACCAACGGCGTGCTGAGTCACATT
GAATATGCGCCCGGTTTTGCCATGATATGCCTTATAGGGCAAACCCTTCT
GTACAGCACCATGTCCCTTAATGTCAACGATGTCGCCGATCTTGAAAACC
CGCATGTATGTGGACAACGGAATAACTCCATGCTTTCGGAAGGGACGGGA
AAACATGTCCCGTGTGCCGCGACGATAGCCCTTTGAGTTGGTCATGTCGA
CTGATAACT
BO12873.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12775-PA | 480 | RpL21-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL21-RC | 656 | CG12775-RC | 97..573 | 495..19 | 2385 | 100 | Minus |
| RpL21-RB | 662 | CG12775-RB | 68..544 | 495..19 | 2385 | 100 | Minus |
| RpL21-RA | 614 | CG12775-RA | 55..531 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22247229..22247705 | 19..495 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:40:02 has no hits.
BO12873.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:24 Download gff for
BO12873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-PA | 1..480 | 15..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:34 Download gff for
BO12873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12775-PA | 1..480 | 15..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:07 Download gff for
BO12873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 10..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:54 Download gff for
BO12873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 10..495 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:54 Download gff for
BO12873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22247218..22247705 | 10..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:07 Download gff for
BO12873.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22247218..22247705 | 10..495 | 99 | | Plus |
BO12873.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ632617
> BO12873.complete
GAAGTTATCAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACAC
GGGACATGTTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCC
ACATACATGCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACA
TGGTGCTGTACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCG
GGCGCATATTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAA
CGCGTAAGAGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCA
CATCCACCACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAA
ATGAGCGATTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTG
AAGCGCCAGCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGA
AGAACCGATTGCTCTGGCCCCGATTCCATACGAATTCATTGCCGCAAGCT
TTCTAGACCAT
BO12873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL21-RC | 480 | CG12775-PC | 1..477 | 17..493 | 2385 | 100 | Plus |
| RpL21-RB | 480 | CG12775-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
| RpL21-RA | 480 | CG12775-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL21-RC | 656 | CG12775-RC | 97..573 | 17..493 | 2385 | 100 | Plus |
| RpL21-RB | 662 | CG12775-RB | 68..544 | 17..493 | 2385 | 100 | Plus |
| RpL21-RA | 614 | CG12775-RA | 55..531 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22247229..22247705 | 493..17 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:52:22 has no hits.
BO12873.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:48 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:12 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:06 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..531 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:48 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:36 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..531 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:36 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22247227..22247705 | 17..495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:06 Download gff for
BO12873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22247227..22247705 | 17..495 | 99 | | Minus |
BO12873.pep Sequence
Translation from 16 to 511
> BO12873.pep
MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQK
GLPYKAYHGKTGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSK
CREDFLRRVKENERLLKEAKEKGQWVSLKRQPEQPKKAHFVKKLEEPIAL
APIPYEFIAASFLDH
BO12873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL21-PC | 159 | CG12775-PC | 1..159 | 1..159 | 834 | 100 | Plus |
| RpL21-PB | 159 | CG12775-PB | 1..159 | 1..159 | 834 | 100 | Plus |
| RpL21-PA | 159 | CG12775-PA | 1..159 | 1..159 | 834 | 100 | Plus |
