Clone Sequence Records
BO12874.3prime Sequence
794 bp (792 high quality bases) assembled on 2006-05-08
> BO12874.3prime
ATGGTCTAGAAAGCTTGCCACCTTGCCCAGGAGATCGTGGCCATAGGGCT
TCTTGCGGTATCCCTTGAAGGCGAACAATTTAAATGCCAACACCATCATC
ACAATGCAGAAGGCGTACAGCAGCATGCCCATCCGCATATCCATGTCGGT
GAAGACACTTGAGATCTGTCGCTTCTGCCGCATTTTGTCCGCCGTGGGAT
GCAGCAGCTCCTCCCGCTGCACACCGTACCGGCTAACGAACTGCGGATTG
TGTATGTTCTTGAGGAAGCCCAGCACGGCGTCCTTGTTCCATTCGATCTC
CAAGTTCTCCGACTTGGAGACGGGCGTGCGGTAGCATTCGTTGCAGCTTT
CCGGCGCTGGGAATTGCTTCTTGGGGAACTCTGGATCCTCGGTGGCATCG
CCTGCCAGGCGCTGGTTCACCTCGTTGTGCGCAGCCCAAAGCCACAGAAC
AGCTTCCTCTTTGTTCGGCACACTCCAGATTTTTCGCCTCGATGCCATTG
CCTGAAAGTGCTCGGAGCACTCGGTGCAGCCGAAGAAGTTCTTGATGTAC
CCGTGCATGGCCTGCAAGACTTCCAGCGGATCCTGGGTCTCCTCATTGTT
GGCCGCCTGCACGGTCATGAAGTGGAAGAGTGTCCACAGGGAGCAACTGA
AGCCGCGCAGGCGGGGACTGGATCCAACGCAACCCACAAAGTGGTTGGAT
GAGTAGACGGGCGAGAGATGAGCCTCTAGGCGCTTCAGCTCCTCCTCGAA
CTGGCTACCCGTCAGTCGTTGATCGTTGAACTGTACCACGTAGT
BO12874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-PA | 1914 | CG4670-RA | 1136..1911 | 794..19 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-RB | 2620 | CG4670-RB | 1535..2310 | 794..19 | 3880 | 100 | Minus |
| CG4670-RA | 2370 | CG4670-RA | 1285..2060 | 794..19 | 3880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13232068..13232553 | 19..504 | 2430 | 100 | Plus |
| 2R | 25286936 | 2R | 13233469..13233762 | 501..794 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:19:34 has no hits.
BO12874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:26 Download gff for
BO12874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-PA | 1136..1914 | 18..794 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:36 Download gff for
BO12874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-PA | 1136..1914 | 18..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:29 Download gff for
BO12874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 1285..2066 | 11..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:32 Download gff for
BO12874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 1285..2066 | 11..794 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:32 Download gff for
BO12874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13232062..13232550 | 11..501 | 99 | <- | Plus |
| 2R | 13233470..13233762 | 502..794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:29 Download gff for
BO12874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9119567..9120055 | 11..501 | 99 | <- | Plus |
| arm_2R | 9120975..9121267 | 502..794 | 100 | | Plus |
BO12874.5prime Sequence
866 bp (821 high quality bases) assembled on 2006-05-08
> BO12874.5prime
GAAGTTATCAGTCGACATGTCGGCGACGCACCTGGTGATTCTGGCCGTCG
CTCTGCTGGTGGACATCGCATCCGCGGGCGTTCCCCTTCCGCGATACGAG
GCGCTCCTCAAGCAGCAGTCCCCTCCATCGGATCCCACACTGGGTCTCTA
CGACGACGGGGATAAGGTTATCCGCCTGTCGGTCGACAACTTCAATGCTA
CCGTCCTGGACCAGAATCGCGGAGCATTAGTCGAGTTCTACAACACTTAC
TGCGGCCACTGTCGCAGATTCGCACCCACGTACAAGTCGGTAGCGGAGCA
CCTGTTGCCCTGGTCCGAGGTGCTCATCGTGGCGGCCATCGATTGCGCCG
CCGAGGAGAACAATGGCATCTGCCGCAACTACGAGGTGATGGGCTATCCA
ACGCTACGTTATCTGGGCCCCGGTTTCCAGCCGGGTCCTCAGCATTACGG
GCAGAGCCTGCATACGCAGGATAAAAACGAAATCCGCGAAATACTAGCGG
GTATGGTGGCCGCAGAGAACCTGACCAGCAGCCACAACAATTCCTACTGG
CCAAACTTTCACTACTTAACGGAGAACGATTCAGCCAGCAGTTTGTTCGA
AGGTCTCAGCAGCGCCACGGAGTACGTGGCAGTGGTTCACGAACCGGAGA
ACACCACTCTAGGCGTCGAGGTGGCTCTGTTCATGACCCAGTGGCCAGCG
GTGAGGGTCCGGCGCGTCATCGATCCAGCCGTGGCCGCCAAATTCAAGAT
TGATCCGACCAATCTGCCCCTCAGCTTGGTGGATCGCAAAGGTGAAATTA
CGGCGTACGCGCCGGAATCTACCAATGGTGAATCGTATGCCAAGAAGCTG
TGGGATGTACTGGGTA
BO12874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-PA | 1914 | CG4670-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-RB | 2620 | CG4670-RB | 400..1249 | 17..866 | 4250 | 100 | Plus |
| CG4670-RA | 2370 | CG4670-RA | 150..999 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13234048..13234897 | 866..17 | 4250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:05:21 has no hits.
BO12874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:26 Download gff for
BO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:38 Download gff for
BO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:52 Download gff for
BO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 141..998 | 7..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:18 Download gff for
BO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 141..998 | 7..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:18 Download gff for
BO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13234049..13234906 | 7..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:52 Download gff for
BO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9121554..9122411 | 7..865 | 99 | | Minus |
BO12874.complete Sequence
1945 bp assembled on 2008-01-17
GenBank Submission: FJ632618
> BO12874.complete
GAAGTTATCAGTCGACATGTCGGCGACGCACCTGGTGATTCTGGCCGTCG
CTCTGCTGGTGGACATCGCATCCGCGGGCGTTCCCCTTCCGCGATACGAG
GCGCTCCTCAAGCAGCAGTCCCCTCCATCGGATCCCACACTGGGTCTCTA
CGACGACGGGGATAAGGTTATCCGCCTGTCGGTCGACAACTTCAATGCTA
CCGTCCTGGACCAGAATCGCGGAGCATTAGTCGAGTTCTACAACACTTAC
TGCGGCCACTGTCGCAGATTCGCACCCACGTACAAGTCGGTAGCGGAGCA
CCTGTTGCCCTGGTCCGAGGTGCTCATCGTGGCGGCCATCGATTGCGCCG
CCGAGGAGAACAATGGCATCTGCCGCAACTACGAGGTGATGGGCTATCCA
ACGCTACGTTATCTGGGCCCCGGTTTCCAGCCGGGTCCTCAGCATTACGG
GCAGAGCCTGCATACGCAGGATAAAAACGAAATCCGCGAAATACTAGCGG
GTATGGTGGCCGCAGAGAACCTGACCAGCAGCCACAACAATTCCTACTGG
CCAAACTTTCACTACTTAACGGAGAACGATTCAGCCAGCAGTTTGTTCGA
AGGTCTCAGCAGCGCCACGGAGTACGTGGCAGTGGTTCACGAACCGGAGA
ACACCACTCTAGGCGTCGAGGTGGCTCTGTTCATGACCCAGTGGCCAGCG
GTGAGGGTCCGGCGCGTCATCGATCCAGCCGTGGCCGCCAAATTCAAGAT
TGATCCGACCAATCTGCCCCTCAGCTTGGTGGATCGCAAAGGTGAAATTA
CGGCGTACGCGCCGGAATCTACCAATGGTGAATCGTATGCCAAGAAGCTG
TGGGATGTACTGGGTAAGAAGAATATCACTCCCAGGCCAGTGAAGGTGCA
CCAACCATCGGCAACGCCGGCGTCCAAGATTAAGGGACAAAACGAATTGA
TCGATGAAGTGCACCGGAACAAGCACTTCGTCTACCAGGCGGATCTCGAG
CAGGCCATACGCACGGTGCTGCACAACGAGGTGTCCAAGGTGGGCGAGAT
CAGTGGCGAGAAACTGCTCGCACTGCAGCGATTCCTAGCTGTGCTGCAGC
GCTACAATCCGCTCGGCGCCAATGGCCACCAGCTGGTGTCCAAGCTGAAG
GACTACGTGGTACAGTTCAACGATCAACGACTGACGGGTAGCCAGTTCGA
GGAGGAGCTGAAGCGCCTAGAGGCTCATCTCTCGCCCGTCTACTCATCCA
ACCACTTTGTGGGTTGCGTTGGATCCAGTCCCCGCCTGCGCGGCTTCAGT
TGCTCCCTGTGGACACTCTTCCACTTCATGACCGTGCAGGCGGCCAACAA
TGAGGAGACCCAGGATCCGCTGGAAGTCTTGCAGGCCATGCACGGGTACA
TCAAGAACTTCTTCGGCTGCACCGAGTGCTCCGAGCACTTTCAGGCAATG
GCATCGAGGCGAAAAATCTGGAGTGTGCCGAACAAAGAGGAAGCTGTTCT
GTGGCTTTGGGCTGCGCACAACGAGGTGAACCAGCGCCTGGCAGGCGATG
CCACCGAGGATCCAGAGTTCCCCAAGAAGCAATTCCCAGCGCCGGAAAGC
TGCAACGAATGCTACCGCACGCCCGTCTCCAAGTCGGAGAACTTGGAGAT
CGAATGGAACAAGGACGCCGTGCTGGGCTTCCTCAAGAACATACACAATC
CGCAGTTCGTTAGCCGGTACGGTGTGCAGCGGGAGGAGCTGCTGCATCCC
ACGGCGGACAAAATGCGGCAGAAGCGACAGATCTCAAGTGTCTTCACCGA
CATGGATATGCGGATGGGCATGCTGCTGTACGCCTTCTGCATTGTGATGA
TGGTGTTGGCATTTAAATTGTTCGCCTTCAAGGGATACCGCAAGAAGCCC
TATGGCCACGATCTCCTGGGCAAGGTGGCAAGCTTTCTAGACCAT
BO12874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-RB | 1914 | CG4670-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| CG4670-RA | 1914 | CG4670-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-RB | 2620 | CG4670-RB | 400..2310 | 17..1927 | 9555 | 100 | Plus |
| CG4670-RA | 2370 | CG4670-RA | 150..2060 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13233469..13234897 | 1445..17 | 7145 | 100 | Minus |
| 2R | 25286936 | 2R | 13232068..13232553 | 1927..1442 | 2430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:02 has no hits.
BO12874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:08 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 1..1914 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:36 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 146..2056 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:48 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 150..2060 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:08 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 137..2062 | 7..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:40 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4670-RA | 150..2060 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:40 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13232066..13232550 | 1445..1929 | 99 | <- | Minus |
| 2R | 13233470..13234897 | 17..1444 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:48 Download gff for
BO12874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9119571..9120055 | 1445..1929 | 99 | <- | Minus |
| arm_2R | 9120975..9122402 | 17..1444 | 100 | | Minus |
BO12874.pep Sequence
Translation from 16 to 1945
> BO12874.pep
MSATHLVILAVALLVDIASAGVPLPRYEALLKQQSPPSDPTLGLYDDGDK
VIRLSVDNFNATVLDQNRGALVEFYNTYCGHCRRFAPTYKSVAEHLLPWS
EVLIVAAIDCAAEENNGICRNYEVMGYPTLRYLGPGFQPGPQHYGQSLHT
QDKNEIREILAGMVAAENLTSSHNNSYWPNFHYLTENDSASSLFEGLSSA
TEYVAVVHEPENTTLGVEVALFMTQWPAVRVRRVIDPAVAAKFKIDPTNL
PLSLVDRKGEITAYAPESTNGESYAKKLWDVLGKKNITPRPVKVHQPSAT
PASKIKGQNELIDEVHRNKHFVYQADLEQAIRTVLHNEVSKVGEISGEKL
LALQRFLAVLQRYNPLGANGHQLVSKLKDYVVQFNDQRLTGSQFEEELKR
LEAHLSPVYSSNHFVGCVGSSPRLRGFSCSLWTLFHFMTVQAANNEETQD
PLEVLQAMHGYIKNFFGCTECSEHFQAMASRRKIWSVPNKEEAVLWLWAA
HNEVNQRLAGDATEDPEFPKKQFPAPESCNECYRTPVSKSENLEIEWNKD
AVLGFLKNIHNPQFVSRYGVQREELLHPTADKMRQKRQISSVFTDMDMRM
GMLLYAFCIVMMVLAFKLFAFKGYRKKPYGHDLLGKVASFLDH
BO12874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4670-PB | 637 | CG4670-PB | 1..637 | 1..637 | 3361 | 100 | Plus |
| CG4670-PA | 637 | CG4670-PA | 1..637 | 1..637 | 3361 | 100 | Plus |
| CG17843-PA | 552 | CG17843-PA | 35..545 | 44..570 | 865 | 35.8 | Plus |
| CG6690-PA | 562 | CG6690-PA | 25..540 | 32..566 | 765 | 32.2 | Plus |
| CG31413-PA | 561 | CG31413-PA | 27..553 | 44..570 | 625 | 28.2 | Plus |
