Clone Sequence Records
BO12875.3prime Sequence
746 bp (745 high quality bases) assembled on 2006-05-08
> BO12875.3prime
ATGGTCTAGAAAGCTTGCATTGTCCTCCACCACTAGTGATACAAACTGCC
TCGCGGTTTCCTTGAAGGCGAAAGCTATAACAACCAAAGTTAGAGCCCAC
CATCGAAGGTTCTTCCTAGTGGCTCCGACTGCCTGGTAGGCGAGGACCAG
GGAGCAGAGGTGATGTCCCATGACCAGAAGATGGTGCAAGTTCCGGCCAA
AAACGGTCGTGTTATTTCGCCACACCAAAATGGGCAGAAGGAAGAACTTG
GACAGGTTGGATATCAGCACCACTTTGAGTATAATTAAAGAAAAATTTCG
AAAGCCTATTTTCTGCATCCAATCAATACTCAGAGTGGCGGTGATTATTA
GCAGCAATAGAGTCATGAACATGTAATCTCCCATGTTTTGAAGGGTATAT
GTGTAAAAGCCCTTTTCGTGGACATGCAAAGAGGCATTCGGAGGGTCGGG
CAGTTTTTGGCGGCACAGCGCAAAGGATTCCAGGAGCAGCACCACCAGCG
AAACCTTCCAGTAGAGCTTAAAGTCGCCATTGTATATAATGTGCCGGAAG
GCGCACGAATCTAATAGCAGTGCATCTATTAATATGATAAACTCCTCGAA
CTCAATGTATTTATCCGTGATTTGGTGACAGTTGTCGCATTGCGTGGTTT
TCATAGTATTGCTGTATTTCTTGAACAGTTCTTTTACTCTGTGTCCACAA
TTAACGCACACAAATCGCTTCTTTTCGGACATGTCGACTGATAACT
BO12875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-PA | 717 | CG32442-RA | 1..714 | 732..19 | 3570 | 100 | Minus |
CG32442-PB | 378 | CG32442-RB | 1..216 | 732..517 | 1080 | 100 | Minus |
CG32442-PB | 378 | CG32442-RB | 223..378 | 518..363 | 780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-RA | 934 | CG32442-RA | 93..806 | 732..19 | 3570 | 100 | Minus |
CG32442-RB | 942 | CG32442-RB | 93..814 | 732..19 | 3480 | 98.9 | Minus |
CG32442-RC | 930 | CG32442-RC | 93..802 | 732..19 | 3450 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21528346..21528706 | 19..379 | 1805 | 100 | Plus |
3L | 28110227 | 3L | 21528770..21528910 | 378..518 | 705 | 100 | Plus |
3L | 28110227 | 3L | 21528966..21529085 | 517..636 | 600 | 100 | Plus |
3L | 28110227 | 3L | 21529145..21529241 | 636..732 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:04:14 has no hits.
BO12875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:27 Download gff for
BO12875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-PA | 1..717 | 16..732 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:39 Download gff for
BO12875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-PA | 1..717 | 16..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:43 Download gff for
BO12875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 93..806 | 19..732 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:30 Download gff for
BO12875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 93..806 | 19..732 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:30 Download gff for
BO12875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21528346..21528704 | 19..377 | 100 | <- | Plus |
3L | 21528770..21528908 | 378..516 | 100 | <- | Plus |
3L | 21528966..21529085 | 517..636 | 100 | <- | Plus |
3L | 21529146..21529241 | 637..732 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:43 Download gff for
BO12875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21521446..21521804 | 19..377 | 100 | <- | Plus |
arm_3L | 21521870..21522008 | 378..516 | 100 | <- | Plus |
arm_3L | 21522066..21522185 | 517..636 | 100 | <- | Plus |
arm_3L | 21522246..21522341 | 637..732 | 100 | | Plus |
BO12875.5prime Sequence
746 bp (745 high quality bases) assembled on 2006-05-08
> BO12875.5prime
GAAGTTATCAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATT
GTGGACACAGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAA
ACCACGCAATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTT
CGAGGAGTTTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCT
TCCGGCACATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTA
ATAATCACCGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCG
AAATTTTTCTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCA
AGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTT
GGCCGGAACTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCT
GGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGT
GGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGG
CAGTTTGTATCACTAGTGGTGGAGGACAATGCAAGCTTTCTAGACC
BO12875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-PA | 717 | CG32442-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
CG32442-PB | 378 | CG32442-RB | 1..216 | 17..232 | 1080 | 100 | Plus |
CG32442-PB | 378 | CG32442-RB | 223..378 | 231..386 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-RA | 934 | CG32442-RA | 93..806 | 17..730 | 3570 | 100 | Plus |
CG32442-RB | 942 | CG32442-RB | 93..814 | 17..730 | 3480 | 98.9 | Plus |
CG32442-RC | 930 | CG32442-RC | 93..802 | 17..730 | 3450 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21528346..21528706 | 730..370 | 1805 | 100 | Minus |
3L | 28110227 | 3L | 21528770..21528910 | 371..231 | 705 | 100 | Minus |
3L | 28110227 | 3L | 21528966..21529085 | 232..113 | 600 | 100 | Minus |
3L | 28110227 | 3L | 21529145..21529241 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:10:09 has no hits.
BO12875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:29 Download gff for
BO12875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-PA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:40 Download gff for
BO12875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-PA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:55:58 Download gff for
BO12875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 93..806 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:20:42 Download gff for
BO12875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 93..806 | 17..730 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:20:42 Download gff for
BO12875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21529146..21529241 | 17..112 | 100 | | Minus |
3L | 21528346..21528704 | 372..730 | 100 | <- | Minus |
3L | 21528770..21528908 | 233..371 | 100 | <- | Minus |
3L | 21528966..21529085 | 113..232 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:55:58 Download gff for
BO12875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21521446..21521804 | 372..730 | 100 | <- | Minus |
arm_3L | 21521870..21522008 | 233..371 | 100 | <- | Minus |
arm_3L | 21522066..21522185 | 113..232 | 100 | <- | Minus |
arm_3L | 21522246..21522341 | 17..112 | 100 | | Minus |
BO12875.complete Sequence
748 bp assembled on 2006-10-11
GenBank Submission: FJ632619
> BO12875.complete
GAAGTTATCAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATT
GTGGACACAGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAA
ACCACGCAATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTT
CGAGGAGTTTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCT
TCCGGCACATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTA
ATAATCACCGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCG
AAATTTTTCTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCA
AGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTT
GGCCGGAACTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCT
GGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGT
GGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGG
CAGTTTGTATCACTAGTGGTGGAGGACAATGCAAGCTTTCTAGACCAT
BO12875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-RA | 717 | CG32442-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
CG32442-RB | 378 | CG32442-PB | 1..378 | 17..386 | 1735 | 97.9 | Plus |
CG32442-RC | 366 | CG32442-PC | 1..366 | 17..386 | 1680 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-RA | 934 | CG32442-RA | 93..806 | 17..730 | 3570 | 100 | Plus |
CG32442-RB | 942 | CG32442-RB | 93..814 | 17..730 | 3455 | 98.9 | Plus |
CG32442-RC | 930 | CG32442-RC | 93..802 | 17..730 | 3400 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21528346..21528706 | 730..370 | 1805 | 100 | Minus |
3L | 28110227 | 3L | 21528770..21528910 | 371..231 | 705 | 100 | Minus |
3L | 28110227 | 3L | 21528966..21529085 | 232..113 | 600 | 100 | Minus |
3L | 28110227 | 3L | 21529145..21529241 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:47:45 has no hits.
BO12875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:31 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:45 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 66..779 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:06 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 93..806 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:32 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 66..779 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:34 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32442-RA | 93..806 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:34 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21528343..21528704 | 372..732 | 99 | <- | Minus |
3L | 21528770..21528908 | 233..371 | 100 | <- | Minus |
3L | 21528966..21529085 | 113..232 | 100 | <- | Minus |
3L | 21529146..21529241 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:06 Download gff for
BO12875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21521443..21521804 | 372..732 | 99 | <- | Minus |
arm_3L | 21521870..21522008 | 233..371 | 100 | <- | Minus |
arm_3L | 21522066..21522185 | 113..232 | 100 | <- | Minus |
arm_3L | 21522246..21522341 | 17..112 | 100 | | Minus |
BO12875.pep Sequence
Translation from 16 to 748
> BO12875.pep
MSEKKRFVCVNCGHRVKELFKKYSNTMKTTQCDNCHQITDKYIEFEEFII
LIDALLLDSCAFRHIIYNGDFKLYWKVSLVVLLLESFALCRQKLPDPPNA
SLHVHEKGFYTYTLQNMGDYMFMTLLLLIITATLSIDWMQKIGFRNFSLI
ILKVVLISNLSKFFLLPILVWRNNTTVFGRNLHHLLVMGHHLCSLVLAYQ
AVGATRKNLRWWALTLVVIAFAFKETARQFVSLVVEDNASFLDH
BO12875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32442-PA | 238 | CG32442-PA | 1..238 | 1..238 | 1251 | 100 | Plus |
CG32442-PC | 121 | CG32442-PC | 1..73 | 1..73 | 393 | 98.6 | Plus |
CG32442-PB | 125 | CG32442-PB | 1..73 | 1..73 | 393 | 98.6 | Plus |