Clone BO12875 Report

Search the DGRC for BO12875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG32442-RA
Protein status:BO12875.pep: validated full length
Sequenced Size:748

Clone Sequence Records

BO12875.3prime Sequence

746 bp (745 high quality bases) assembled on 2006-05-08

> BO12875.3prime
ATGGTCTAGAAAGCTTGCATTGTCCTCCACCACTAGTGATACAAACTGCC
TCGCGGTTTCCTTGAAGGCGAAAGCTATAACAACCAAAGTTAGAGCCCAC
CATCGAAGGTTCTTCCTAGTGGCTCCGACTGCCTGGTAGGCGAGGACCAG
GGAGCAGAGGTGATGTCCCATGACCAGAAGATGGTGCAAGTTCCGGCCAA
AAACGGTCGTGTTATTTCGCCACACCAAAATGGGCAGAAGGAAGAACTTG
GACAGGTTGGATATCAGCACCACTTTGAGTATAATTAAAGAAAAATTTCG
AAAGCCTATTTTCTGCATCCAATCAATACTCAGAGTGGCGGTGATTATTA
GCAGCAATAGAGTCATGAACATGTAATCTCCCATGTTTTGAAGGGTATAT
GTGTAAAAGCCCTTTTCGTGGACATGCAAAGAGGCATTCGGAGGGTCGGG
CAGTTTTTGGCGGCACAGCGCAAAGGATTCCAGGAGCAGCACCACCAGCG
AAACCTTCCAGTAGAGCTTAAAGTCGCCATTGTATATAATGTGCCGGAAG
GCGCACGAATCTAATAGCAGTGCATCTATTAATATGATAAACTCCTCGAA
CTCAATGTATTTATCCGTGATTTGGTGACAGTTGTCGCATTGCGTGGTTT
TCATAGTATTGCTGTATTTCTTGAACAGTTCTTTTACTCTGTGTCCACAA
TTAACGCACACAAATCGCTTCTTTTCGGACATGTCGACTGATAACT

BO12875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-PA 717 CG32442-RA 1..714 732..19 3570 100 Minus
CG32442-PB 378 CG32442-RB 1..216 732..517 1080 100 Minus
CG32442-PB 378 CG32442-RB 223..378 518..363 780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-RA 934 CG32442-RA 93..806 732..19 3570 100 Minus
CG32442-RB 942 CG32442-RB 93..814 732..19 3480 98.9 Minus
CG32442-RC 930 CG32442-RC 93..802 732..19 3450 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21528346..21528706 19..379 1805 100 Plus
3L 28110227 3L 21528770..21528910 378..518 705 100 Plus
3L 28110227 3L 21528966..21529085 517..636 600 100 Plus
3L 28110227 3L 21529145..21529241 636..732 485 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:04:14 has no hits.

BO12875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:27 Download gff for BO12875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-PA 1..717 16..732 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:39 Download gff for BO12875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-PA 1..717 16..732 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:43 Download gff for BO12875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 93..806 19..732 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:30 Download gff for BO12875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 93..806 19..732 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:30 Download gff for BO12875.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21528346..21528704 19..377 100 <- Plus
3L 21528770..21528908 378..516 100 <- Plus
3L 21528966..21529085 517..636 100 <- Plus
3L 21529146..21529241 637..732 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:43 Download gff for BO12875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21521446..21521804 19..377 100 <- Plus
arm_3L 21521870..21522008 378..516 100 <- Plus
arm_3L 21522066..21522185 517..636 100 <- Plus
arm_3L 21522246..21522341 637..732 100   Plus

BO12875.5prime Sequence

746 bp (745 high quality bases) assembled on 2006-05-08

> BO12875.5prime
GAAGTTATCAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATT
GTGGACACAGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAA
ACCACGCAATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTT
CGAGGAGTTTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCT
TCCGGCACATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTA
ATAATCACCGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCG
AAATTTTTCTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCA
AGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTT
GGCCGGAACTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCT
GGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGT
GGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGG
CAGTTTGTATCACTAGTGGTGGAGGACAATGCAAGCTTTCTAGACC

BO12875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-PA 717 CG32442-RA 1..714 17..730 3570 100 Plus
CG32442-PB 378 CG32442-RB 1..216 17..232 1080 100 Plus
CG32442-PB 378 CG32442-RB 223..378 231..386 780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-RA 934 CG32442-RA 93..806 17..730 3570 100 Plus
CG32442-RB 942 CG32442-RB 93..814 17..730 3480 98.9 Plus
CG32442-RC 930 CG32442-RC 93..802 17..730 3450 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21528346..21528706 730..370 1805 100 Minus
3L 28110227 3L 21528770..21528910 371..231 705 100 Minus
3L 28110227 3L 21528966..21529085 232..113 600 100 Minus
3L 28110227 3L 21529145..21529241 113..17 485 100 Minus
Blast to na_te.dros performed on 2015-02-02 10:10:09 has no hits.

BO12875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:29 Download gff for BO12875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-PA 1..717 17..733 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:40 Download gff for BO12875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-PA 1..717 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:55:58 Download gff for BO12875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 93..806 17..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:20:42 Download gff for BO12875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 93..806 17..730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:20:42 Download gff for BO12875.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21529146..21529241 17..112 100   Minus
3L 21528346..21528704 372..730 100 <- Minus
3L 21528770..21528908 233..371 100 <- Minus
3L 21528966..21529085 113..232 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:55:58 Download gff for BO12875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21521446..21521804 372..730 100 <- Minus
arm_3L 21521870..21522008 233..371 100 <- Minus
arm_3L 21522066..21522185 113..232 100 <- Minus
arm_3L 21522246..21522341 17..112 100   Minus

BO12875.complete Sequence

748 bp assembled on 2006-10-11

GenBank Submission: FJ632619

> BO12875.complete
GAAGTTATCAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATT
GTGGACACAGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAA
ACCACGCAATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTT
CGAGGAGTTTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCT
TCCGGCACATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCG
CTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCC
CGACCCTCCGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACAT
ATACCCTTCAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTA
ATAATCACCGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCG
AAATTTTTCTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCA
AGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTT
GGCCGGAACTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCT
GGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGT
GGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGG
CAGTTTGTATCACTAGTGGTGGAGGACAATGCAAGCTTTCTAGACCAT

BO12875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-RA 717 CG32442-PA 1..714 17..730 3570 100 Plus
CG32442-RB 378 CG32442-PB 1..378 17..386 1735 97.9 Plus
CG32442-RC 366 CG32442-PC 1..366 17..386 1680 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-RA 934 CG32442-RA 93..806 17..730 3570 100 Plus
CG32442-RB 942 CG32442-RB 93..814 17..730 3455 98.9 Plus
CG32442-RC 930 CG32442-RC 93..802 17..730 3400 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21528346..21528706 730..370 1805 100 Minus
3L 28110227 3L 21528770..21528910 371..231 705 100 Minus
3L 28110227 3L 21528966..21529085 232..113 600 100 Minus
3L 28110227 3L 21529145..21529241 113..17 485 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:47:45 has no hits.

BO12875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:31 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 1..717 17..733 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:45 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 66..779 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:06 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 93..806 17..732 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:32 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 66..779 17..730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:34 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
CG32442-RA 93..806 17..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:34 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21528343..21528704 372..732 99 <- Minus
3L 21528770..21528908 233..371 100 <- Minus
3L 21528966..21529085 113..232 100 <- Minus
3L 21529146..21529241 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:06 Download gff for BO12875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21521443..21521804 372..732 99 <- Minus
arm_3L 21521870..21522008 233..371 100 <- Minus
arm_3L 21522066..21522185 113..232 100 <- Minus
arm_3L 21522246..21522341 17..112 100   Minus

BO12875.pep Sequence

Translation from 16 to 748

> BO12875.pep
MSEKKRFVCVNCGHRVKELFKKYSNTMKTTQCDNCHQITDKYIEFEEFII
LIDALLLDSCAFRHIIYNGDFKLYWKVSLVVLLLESFALCRQKLPDPPNA
SLHVHEKGFYTYTLQNMGDYMFMTLLLLIITATLSIDWMQKIGFRNFSLI
ILKVVLISNLSKFFLLPILVWRNNTTVFGRNLHHLLVMGHHLCSLVLAYQ
AVGATRKNLRWWALTLVVIAFAFKETARQFVSLVVEDNASFLDH

BO12875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32442-PA 238 CG32442-PA 1..238 1..238 1251 100 Plus
CG32442-PC 121 CG32442-PC 1..73 1..73 393 98.6 Plus
CG32442-PB 125 CG32442-PB 1..73 1..73 393 98.6 Plus