Clone BO12876 Report

Search the DGRC for BO12876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCht4-RA
Protein status:BO12876.pep: validated full length
Sequenced Size:1420

Clone Sequence Records

BO12876.3prime Sequence

842 bp (717 high quality bases) assembled on 2006-05-08

> BO12876.3prime
ATGGTCTAGAAAGCTTGCCGGCCAGTCGCAATTTAAGGTAATGGTATTGA
AGCACAGCCCTGCTCCGCATTGGAAGTCGTAACGGACGCCACCGACGCAC
TGGTAGAACTTATTGCAATCGCTTTCCAAAACAAAGAAACCATCTTGGGC
GCACTCGTTGCCACCACTTCCACCACCGGGAGTGGGAGCCGGAGTGGGTG
ACGAAGTGGGAGCAGCCGTTGGAGCGGGAGTAACACTTCCTTCTCCTCCG
CCGCCGCCGCCTCCGCCACTTCCTCCACTCACTTCCCTGCCAAGAGCACG
ATTCATGGTCTTCAGCAGTGGATAGGACTCGCCGCACAGACCACGGAAAT
CATCCGTCTCGATGGACCACATCATGGCACCACCCAGATTGCGGGACTCG
ACCAACTGCATCTTCAGCTGGATGCTTTCGGGATTGTCATAGCCGATCCA
CTGATCACCCTGGAAGGCATATGGAGCACCGTTCTCCTGATCGAACACGG
TTTGCCAGTTGTTCAGGCAGATCTCGTGGTAGCCCAGGAATCCGTTCTCC
CGCGTGTAGACGCCAGCAGTTCCGGGACCAATGCACGCAGCACCGGGCCA
GTTCTGTGAGCTATCGGACATCTGGTAGCTGTGGCCATAGAAGCCAATGC
CAAGGATAAGCTTCTCAGCGGGAGCACCATGAGAAAGCCAATAATCAATA
GATTCGGCGACTTCGGGCAGAGGAGCATTGAGACCCAGATAGCCATCCAG
AGCCATGTGGAAATCGTAGGTCATAACGTTAATGAAAGTCAAGTGCTGCG
AAATGGCCGGAATGTCGTATGAGATGCTGGCCGATTTCTCGG

BO12876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3986-PA 1389 Cht4-RA 563..1386 842..19 4095 99.8 Minus
CG2054-PA 1455 Cht2-RA 921..964 559..516 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cht4-RA 1473 CG3986-RA 592..1415 842..19 4105 99.9 Minus
Cht9-RA 1161 CG10531-RA 868..1099 536..305 260 74.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21065437..21066096 19..678 3300 100 Plus
2R 25286936 2R 21066149..21066316 675..842 825 99.4 Plus
2R 25286936 2R 21068054..21068285 305..536 260 74.1 Plus
Blast to na_te.dros performed on 2015-02-10 20:53:27 has no hits.

BO12876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:30 Download gff for BO12876.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht4-PA 563..1389 15..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:42 Download gff for BO12876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3986-PA 563..1389 15..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:19 Download gff for BO12876.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 592..1418 15..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:51 Download gff for BO12876.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 592..1418 15..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:51 Download gff for BO12876.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21065433..21066095 15..677 99 <- Plus
2R 21066152..21066316 678..842 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:19 Download gff for BO12876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16952938..16953600 15..677 99 <- Plus
arm_2R 16953657..16953821 678..842 99   Plus

BO12876.5prime Sequence

871 bp (754 high quality bases) assembled on 2006-05-08

> BO12876.5prime
GAAGTTATCAGTCGACATGAAGTTAGTATCGATTTGGGCATTGGCAGCTC
TTTGCCTTTGCCTTGGACAAGTGGCCAGCAGCGAGAAGCTGCTTAACTGC
TACTGGGGCACGTGGGCCAACTATCGTCCCGGAGATGGAAAGTTCACACC
CTCCGATATCGATCCCTCCCTGTGCACCCACATCAGCTACACCTTTTTCG
GAATCAGCGATGCCGGCGAGTTCAAGTCCCTGGACACCTGGCTGGACATG
GACGATGGTCTGGGCTTTATTAGCCAGACAATTGCTCTGAAGCAGCGCAA
TCCAAACCTCAAGATTTTGGCGGTGGTTGGTGGTTGGAATGAAGGTTCCA
CCAAATACTCGGCCATGGCAGCCGATCCTGCCAAGCGTGCCACCTTCGTC
TCCACTTCCCTGGCCTTCATTCAGCAGTATAGCTTTGATGGCTTGGATTT
GGATTGGGAGTACCCTGGTCAGCGCGGAGGCAGTGAAGCGGATCGCGAGA
ACTTTGTTACTCTGCTGCGCGAGATTAAGGAGACCTACGATCAGTATGGC
TTGGAGCTGGGTATTGCTGTCGGTGCGTCCGAGAAATCGGCCAGCATCTC
ATACGACATTCCGGCCATTTCGCAGCACTTGACTTTCATTAACGTTATGA
CCTACGACTTCCACATGGCTCTGGATGGCTATCTGGGTCTCAATGCTCCT
CTGCCCGAAGTCGCCGAATCTATTGATTATTGGCTTTCTCATGGTGCTCC
CGCTGAGAAGCTTATCCTTGGCATTGGCTTCTATGGCCACAGCTACCAGA
TGTCCGATAGCTCACAGAACTGGCCCGGTGCTGCGTGCATTGGTCCCGGA
ACTGCTGGCGTCTACACGCGG

BO12876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3986-PA 1389 Cht4-RA 1..855 17..871 4275 100 Plus
CG10531-PA 1107 CG10531-RA 469..501 500..532 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cht4-RA 1473 CG3986-RA 30..884 17..871 4275 100 Plus
Cht9-RA 1161 CG10531-RA 84..643 95..660 320 72.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21066416..21066687 534..263 1360 100 Minus
2R 25286936 2R 21066149..21066360 746..535 1060 100 Minus
2R 25286936 2R 21066748..21066925 264..87 890 100 Minus
2R 25286936 2R 21065968..21066096 871..743 645 100 Minus
2R 25286936 2R 21066989..21067058 86..17 350 100 Minus
2R 25286936 2R 21068979..21069131 247..95 255 77.8 Minus
Blast to na_te.dros performed on 2015-02-11 12:57:12 has no hits.

BO12876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:31 Download gff for BO12876.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht4-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:43 Download gff for BO12876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3986-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:19:07 Download gff for BO12876.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 26..884 9..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:06:18 Download gff for BO12876.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 26..884 9..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:18 Download gff for BO12876.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21065968..21066095 744..871 100 <- Minus
2R 21066152..21066360 535..743 100 <- Minus
2R 21066416..21066686 264..534 100 <- Minus
2R 21066749..21066925 87..263 100 <- Minus
2R 21066989..21067062 9..86 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:19:07 Download gff for BO12876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16953473..16953600 744..871 100 <- Minus
arm_2R 16953657..16953865 535..743 100 <- Minus
arm_2R 16953921..16954191 264..534 100 <- Minus
arm_2R 16954254..16954430 87..263 100 <- Minus
arm_2R 16954494..16954567 9..86 94   Minus

BO12876.complete Sequence

1420 bp assembled on 2006-10-11

GenBank Submission: FJ632620

> BO12876.complete
GAAGTTATCAGTCGACATGAAGTTAGTATCGATTTGGGCATTGGCAGCTC
TTTGCCTTTGCCTTGGACAAGTGGCCAGCAGCGAGAAGCTGCTTAACTGC
TACTGGGGCACGTGGGCCAACTATCGTCCCGGAGATGGAAAGTTCACACC
CTCCGATATCGATCCCTCCCTGTGCACCCACATCAGCTACACCTTTTTCG
GAATCAGCGATGCCGGCGAGTTCAAGTCCCTGGACACCTGGCTGGACATG
GACGATGGTCTGGGCTTTATTAGCCAGACAATTGCTCTGAAGCAGCGCAA
TCCAAACCTCAAGATTTTGGCGGTGGTTGGTGGTTGGAATGAAGGTTCCA
CCAAATACTCGGCCATGGCAGCCGATCCTGCCAAGCGTGCCACCTTCGTC
TCCACTTCCCTGGCCTTCATTCAGCAGTATAGCTTTGATGGCTTGGATTT
GGATTGGGAGTACCCTGGTCAGCGCGGAGGCAGTGAAGCGGATCGCGAGA
ACTTTGTTACTCTGCTGCGCGAGATTAAGGAGACCTACGATCAGTATGGC
TTGGAGCTGGGTATTGCTGTCGGTGCGTCCGAGAAATCGGCCAGCATCTC
ATACGACATTCCGGCCATTTCGCAGCACTTGACTTTCATTAACGTTATGA
CCTACGACTTCCACATGGCTCTGGATGGCTATCTGGGTCTCAATGCTCCT
CTGCCCGAAGTCGCCGAATCTATTGATTATTGGCTTTCTCATGGTGCTCC
CGCTGAGAAGCTTATCCTTGGCATTGGCTTCTATGGCCACAGCTACCAGA
TGTCCGATAGCTCACAGAACTGGCCCGGTGCTGCGTGCATTGGTCCCGGA
ACTGCTGGCGTCTACACGCGGGAGAACGGATTCCTGGGCTACCACGAGAT
CTGCCTGAACAACTGGCAAACCGTGTTCGATCAGGAGAACGGTGCTCCAT
ATGCCTTCCAGGGTGATCAGTGGATCGGCTATGACAATCCCGAAAGCATC
CAGCTGAAGATGCAGTTGGTCGAGTCCCGCAATCTGGGTGGTGCCATGAT
GTGGTCCATCGAGACGGATGATTTCCGTGGTCTGTGCGGCGAGTCCTATC
CACTGCTGAAGACCATGAATCGTGCTCTTGGCAGGGAAGTGAGTGGAGGA
AGTGGCGGAGGCGGCGGCGGCGGAGGAGAAGGAAGTGTTACTCCCGCTCC
AACGGCTGCTCCCACTTCGTCACCCACTCCGGCTCCCACTCCCGGTGGTG
GAAGTGGTGGCAACGAGTGCGCCCAAGATGGTTTCTTTGTTTTGGAAAGC
GATTGCAATAAGTTCTACCAGTGCGTCGGTGGCGTCCGTTACGACTTCCA
ATGCGGAGCAGGGCTGTGCTTCAATACCATTACCTTAAATTGCGACTGGC
CGGCAAGCTTTCTAGACCAT

BO12876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cht4-RA 1389 CG3986-PA 1..1386 17..1402 6930 100 Plus
Cht9-RA 1107 CG10531-PA 70..1085 95..1116 275 68.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cht4-RA 1473 CG3986-RA 30..1415 17..1402 6930 100 Plus
Cht9-RA 1161 CG10531-RA 84..1099 95..1116 275 68.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21065437..21066096 1402..743 3300 100 Minus
2R 25286936 2R 21066416..21066687 534..263 1360 100 Minus
2R 25286936 2R 21066149..21066360 746..535 1060 100 Minus
2R 25286936 2R 21066748..21066925 264..87 890 100 Minus
2R 25286936 2R 21066989..21067058 86..17 350 100 Minus
2R 25286936 2R 21068054..21068285 1116..885 260 74.1 Minus
2R 25286936 2R 21068979..21069131 247..95 255 77.8 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:22 has no hits.

BO12876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:34 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 1..1389 17..1406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:48 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 26..1418 9..1406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:15 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 30..1415 17..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:34 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 26..1418 9..1406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:16 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
Cht4-RA 30..1415 17..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:16 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21066416..21066686 264..534 100 <- Minus
2R 21066749..21066925 87..263 100 <- Minus
2R 21066989..21067058 17..86 100   Minus
2R 21066152..21066360 535..743 100 <- Minus
2R 21065435..21066095 744..1404 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:15 Download gff for BO12876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16954254..16954430 87..263 100 <- Minus
arm_2R 16954494..16954563 17..86 100   Minus
arm_2R 16952940..16953600 744..1404 99 <- Minus
arm_2R 16953657..16953865 535..743 100 <- Minus
arm_2R 16953921..16954191 264..534 100 <- Minus

BO12876.pep Sequence

Translation from 16 to 1420

> BO12876.pep
MKLVSIWALAALCLCLGQVASSEKLLNCYWGTWANYRPGDGKFTPSDIDP
SLCTHISYTFFGISDAGEFKSLDTWLDMDDGLGFISQTIALKQRNPNLKI
LAVVGGWNEGSTKYSAMAADPAKRATFVSTSLAFIQQYSFDGLDLDWEYP
GQRGGSEADRENFVTLLREIKETYDQYGLELGIAVGASEKSASISYDIPA
ISQHLTFINVMTYDFHMALDGYLGLNAPLPEVAESIDYWLSHGAPAEKLI
LGIGFYGHSYQMSDSSQNWPGAACIGPGTAGVYTRENGFLGYHEICLNNW
QTVFDQENGAPYAFQGDQWIGYDNPESIQLKMQLVESRNLGGAMMWSIET
DDFRGLCGESYPLLKTMNRALGREVSGGSGGGGGGGGEGSVTPAPTAAPT
SSPTPAPTPGGGSGGNECAQDGFFVLESDCNKFYQCVGGVRYDFQCGAGL
CFNTITLNCDWPASFLDH

BO12876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cht4-PA 462 CG3986-PA 1..462 1..462 2513 100 Plus
Cht9-PA 368 CG10531-PA 3..366 2..371 1274 63 Plus
Cht8-PA 476 CG9357-PA 26..473 21..464 982 43.6 Plus
Cht2-PB 484 CG2054-PB 40..428 23..370 723 39.9 Plus
Cht2-PC 484 CG2054-PC 40..428 23..370 723 39.9 Plus