Clone Sequence Records
BO12876.3prime Sequence
842 bp (717 high quality bases) assembled on 2006-05-08
> BO12876.3prime
ATGGTCTAGAAAGCTTGCCGGCCAGTCGCAATTTAAGGTAATGGTATTGA
AGCACAGCCCTGCTCCGCATTGGAAGTCGTAACGGACGCCACCGACGCAC
TGGTAGAACTTATTGCAATCGCTTTCCAAAACAAAGAAACCATCTTGGGC
GCACTCGTTGCCACCACTTCCACCACCGGGAGTGGGAGCCGGAGTGGGTG
ACGAAGTGGGAGCAGCCGTTGGAGCGGGAGTAACACTTCCTTCTCCTCCG
CCGCCGCCGCCTCCGCCACTTCCTCCACTCACTTCCCTGCCAAGAGCACG
ATTCATGGTCTTCAGCAGTGGATAGGACTCGCCGCACAGACCACGGAAAT
CATCCGTCTCGATGGACCACATCATGGCACCACCCAGATTGCGGGACTCG
ACCAACTGCATCTTCAGCTGGATGCTTTCGGGATTGTCATAGCCGATCCA
CTGATCACCCTGGAAGGCATATGGAGCACCGTTCTCCTGATCGAACACGG
TTTGCCAGTTGTTCAGGCAGATCTCGTGGTAGCCCAGGAATCCGTTCTCC
CGCGTGTAGACGCCAGCAGTTCCGGGACCAATGCACGCAGCACCGGGCCA
GTTCTGTGAGCTATCGGACATCTGGTAGCTGTGGCCATAGAAGCCAATGC
CAAGGATAAGCTTCTCAGCGGGAGCACCATGAGAAAGCCAATAATCAATA
GATTCGGCGACTTCGGGCAGAGGAGCATTGAGACCCAGATAGCCATCCAG
AGCCATGTGGAAATCGTAGGTCATAACGTTAATGAAAGTCAAGTGCTGCG
AAATGGCCGGAATGTCGTATGAGATGCTGGCCGATTTCTCGG
BO12876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3986-PA | 1389 | Cht4-RA | 563..1386 | 842..19 | 4095 | 99.8 | Minus |
CG2054-PA | 1455 | Cht2-RA | 921..964 | 559..516 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht4-RA | 1473 | CG3986-RA | 592..1415 | 842..19 | 4105 | 99.9 | Minus |
Cht9-RA | 1161 | CG10531-RA | 868..1099 | 536..305 | 260 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21065437..21066096 | 19..678 | 3300 | 100 | Plus |
2R | 25286936 | 2R | 21066149..21066316 | 675..842 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 21068054..21068285 | 305..536 | 260 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:53:27 has no hits.
BO12876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:30 Download gff for
BO12876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-PA | 563..1389 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:42 Download gff for
BO12876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3986-PA | 563..1389 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:19 Download gff for
BO12876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 592..1418 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:51 Download gff for
BO12876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 592..1418 | 15..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:51 Download gff for
BO12876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21065433..21066095 | 15..677 | 99 | <- | Plus |
2R | 21066152..21066316 | 678..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:19 Download gff for
BO12876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16952938..16953600 | 15..677 | 99 | <- | Plus |
arm_2R | 16953657..16953821 | 678..842 | 99 | | Plus |
BO12876.5prime Sequence
871 bp (754 high quality bases) assembled on 2006-05-08
> BO12876.5prime
GAAGTTATCAGTCGACATGAAGTTAGTATCGATTTGGGCATTGGCAGCTC
TTTGCCTTTGCCTTGGACAAGTGGCCAGCAGCGAGAAGCTGCTTAACTGC
TACTGGGGCACGTGGGCCAACTATCGTCCCGGAGATGGAAAGTTCACACC
CTCCGATATCGATCCCTCCCTGTGCACCCACATCAGCTACACCTTTTTCG
GAATCAGCGATGCCGGCGAGTTCAAGTCCCTGGACACCTGGCTGGACATG
GACGATGGTCTGGGCTTTATTAGCCAGACAATTGCTCTGAAGCAGCGCAA
TCCAAACCTCAAGATTTTGGCGGTGGTTGGTGGTTGGAATGAAGGTTCCA
CCAAATACTCGGCCATGGCAGCCGATCCTGCCAAGCGTGCCACCTTCGTC
TCCACTTCCCTGGCCTTCATTCAGCAGTATAGCTTTGATGGCTTGGATTT
GGATTGGGAGTACCCTGGTCAGCGCGGAGGCAGTGAAGCGGATCGCGAGA
ACTTTGTTACTCTGCTGCGCGAGATTAAGGAGACCTACGATCAGTATGGC
TTGGAGCTGGGTATTGCTGTCGGTGCGTCCGAGAAATCGGCCAGCATCTC
ATACGACATTCCGGCCATTTCGCAGCACTTGACTTTCATTAACGTTATGA
CCTACGACTTCCACATGGCTCTGGATGGCTATCTGGGTCTCAATGCTCCT
CTGCCCGAAGTCGCCGAATCTATTGATTATTGGCTTTCTCATGGTGCTCC
CGCTGAGAAGCTTATCCTTGGCATTGGCTTCTATGGCCACAGCTACCAGA
TGTCCGATAGCTCACAGAACTGGCCCGGTGCTGCGTGCATTGGTCCCGGA
ACTGCTGGCGTCTACACGCGG
BO12876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3986-PA | 1389 | Cht4-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
CG10531-PA | 1107 | CG10531-RA | 469..501 | 500..532 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht4-RA | 1473 | CG3986-RA | 30..884 | 17..871 | 4275 | 100 | Plus |
Cht9-RA | 1161 | CG10531-RA | 84..643 | 95..660 | 320 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21066416..21066687 | 534..263 | 1360 | 100 | Minus |
2R | 25286936 | 2R | 21066149..21066360 | 746..535 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 21066748..21066925 | 264..87 | 890 | 100 | Minus |
2R | 25286936 | 2R | 21065968..21066096 | 871..743 | 645 | 100 | Minus |
2R | 25286936 | 2R | 21066989..21067058 | 86..17 | 350 | 100 | Minus |
2R | 25286936 | 2R | 21068979..21069131 | 247..95 | 255 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:57:12 has no hits.
BO12876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:31 Download gff for
BO12876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:43 Download gff for
BO12876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3986-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:19:07 Download gff for
BO12876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 26..884 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:06:18 Download gff for
BO12876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 26..884 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:18 Download gff for
BO12876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21065968..21066095 | 744..871 | 100 | <- | Minus |
2R | 21066152..21066360 | 535..743 | 100 | <- | Minus |
2R | 21066416..21066686 | 264..534 | 100 | <- | Minus |
2R | 21066749..21066925 | 87..263 | 100 | <- | Minus |
2R | 21066989..21067062 | 9..86 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:19:07 Download gff for
BO12876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16953473..16953600 | 744..871 | 100 | <- | Minus |
arm_2R | 16953657..16953865 | 535..743 | 100 | <- | Minus |
arm_2R | 16953921..16954191 | 264..534 | 100 | <- | Minus |
arm_2R | 16954254..16954430 | 87..263 | 100 | <- | Minus |
arm_2R | 16954494..16954567 | 9..86 | 94 | | Minus |
BO12876.complete Sequence
1420 bp assembled on 2006-10-11
GenBank Submission: FJ632620
> BO12876.complete
GAAGTTATCAGTCGACATGAAGTTAGTATCGATTTGGGCATTGGCAGCTC
TTTGCCTTTGCCTTGGACAAGTGGCCAGCAGCGAGAAGCTGCTTAACTGC
TACTGGGGCACGTGGGCCAACTATCGTCCCGGAGATGGAAAGTTCACACC
CTCCGATATCGATCCCTCCCTGTGCACCCACATCAGCTACACCTTTTTCG
GAATCAGCGATGCCGGCGAGTTCAAGTCCCTGGACACCTGGCTGGACATG
GACGATGGTCTGGGCTTTATTAGCCAGACAATTGCTCTGAAGCAGCGCAA
TCCAAACCTCAAGATTTTGGCGGTGGTTGGTGGTTGGAATGAAGGTTCCA
CCAAATACTCGGCCATGGCAGCCGATCCTGCCAAGCGTGCCACCTTCGTC
TCCACTTCCCTGGCCTTCATTCAGCAGTATAGCTTTGATGGCTTGGATTT
GGATTGGGAGTACCCTGGTCAGCGCGGAGGCAGTGAAGCGGATCGCGAGA
ACTTTGTTACTCTGCTGCGCGAGATTAAGGAGACCTACGATCAGTATGGC
TTGGAGCTGGGTATTGCTGTCGGTGCGTCCGAGAAATCGGCCAGCATCTC
ATACGACATTCCGGCCATTTCGCAGCACTTGACTTTCATTAACGTTATGA
CCTACGACTTCCACATGGCTCTGGATGGCTATCTGGGTCTCAATGCTCCT
CTGCCCGAAGTCGCCGAATCTATTGATTATTGGCTTTCTCATGGTGCTCC
CGCTGAGAAGCTTATCCTTGGCATTGGCTTCTATGGCCACAGCTACCAGA
TGTCCGATAGCTCACAGAACTGGCCCGGTGCTGCGTGCATTGGTCCCGGA
ACTGCTGGCGTCTACACGCGGGAGAACGGATTCCTGGGCTACCACGAGAT
CTGCCTGAACAACTGGCAAACCGTGTTCGATCAGGAGAACGGTGCTCCAT
ATGCCTTCCAGGGTGATCAGTGGATCGGCTATGACAATCCCGAAAGCATC
CAGCTGAAGATGCAGTTGGTCGAGTCCCGCAATCTGGGTGGTGCCATGAT
GTGGTCCATCGAGACGGATGATTTCCGTGGTCTGTGCGGCGAGTCCTATC
CACTGCTGAAGACCATGAATCGTGCTCTTGGCAGGGAAGTGAGTGGAGGA
AGTGGCGGAGGCGGCGGCGGCGGAGGAGAAGGAAGTGTTACTCCCGCTCC
AACGGCTGCTCCCACTTCGTCACCCACTCCGGCTCCCACTCCCGGTGGTG
GAAGTGGTGGCAACGAGTGCGCCCAAGATGGTTTCTTTGTTTTGGAAAGC
GATTGCAATAAGTTCTACCAGTGCGTCGGTGGCGTCCGTTACGACTTCCA
ATGCGGAGCAGGGCTGTGCTTCAATACCATTACCTTAAATTGCGACTGGC
CGGCAAGCTTTCTAGACCAT
BO12876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht4-RA | 1389 | CG3986-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Cht9-RA | 1107 | CG10531-PA | 70..1085 | 95..1116 | 275 | 68.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht4-RA | 1473 | CG3986-RA | 30..1415 | 17..1402 | 6930 | 100 | Plus |
Cht9-RA | 1161 | CG10531-RA | 84..1099 | 95..1116 | 275 | 68.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21065437..21066096 | 1402..743 | 3300 | 100 | Minus |
2R | 25286936 | 2R | 21066416..21066687 | 534..263 | 1360 | 100 | Minus |
2R | 25286936 | 2R | 21066149..21066360 | 746..535 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 21066748..21066925 | 264..87 | 890 | 100 | Minus |
2R | 25286936 | 2R | 21066989..21067058 | 86..17 | 350 | 100 | Minus |
2R | 25286936 | 2R | 21068054..21068285 | 1116..885 | 260 | 74.1 | Minus |
2R | 25286936 | 2R | 21068979..21069131 | 247..95 | 255 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:22 has no hits.
BO12876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:34 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 1..1389 | 17..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:48 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 26..1418 | 9..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:15 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 30..1415 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:34 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 26..1418 | 9..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:16 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht4-RA | 30..1415 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:16 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21066416..21066686 | 264..534 | 100 | <- | Minus |
2R | 21066749..21066925 | 87..263 | 100 | <- | Minus |
2R | 21066989..21067058 | 17..86 | 100 | | Minus |
2R | 21066152..21066360 | 535..743 | 100 | <- | Minus |
2R | 21065435..21066095 | 744..1404 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:15 Download gff for
BO12876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16954254..16954430 | 87..263 | 100 | <- | Minus |
arm_2R | 16954494..16954563 | 17..86 | 100 | | Minus |
arm_2R | 16952940..16953600 | 744..1404 | 99 | <- | Minus |
arm_2R | 16953657..16953865 | 535..743 | 100 | <- | Minus |
arm_2R | 16953921..16954191 | 264..534 | 100 | <- | Minus |
BO12876.pep Sequence
Translation from 16 to 1420
> BO12876.pep
MKLVSIWALAALCLCLGQVASSEKLLNCYWGTWANYRPGDGKFTPSDIDP
SLCTHISYTFFGISDAGEFKSLDTWLDMDDGLGFISQTIALKQRNPNLKI
LAVVGGWNEGSTKYSAMAADPAKRATFVSTSLAFIQQYSFDGLDLDWEYP
GQRGGSEADRENFVTLLREIKETYDQYGLELGIAVGASEKSASISYDIPA
ISQHLTFINVMTYDFHMALDGYLGLNAPLPEVAESIDYWLSHGAPAEKLI
LGIGFYGHSYQMSDSSQNWPGAACIGPGTAGVYTRENGFLGYHEICLNNW
QTVFDQENGAPYAFQGDQWIGYDNPESIQLKMQLVESRNLGGAMMWSIET
DDFRGLCGESYPLLKTMNRALGREVSGGSGGGGGGGGEGSVTPAPTAAPT
SSPTPAPTPGGGSGGNECAQDGFFVLESDCNKFYQCVGGVRYDFQCGAGL
CFNTITLNCDWPASFLDH
BO12876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht4-PA | 462 | CG3986-PA | 1..462 | 1..462 | 2513 | 100 | Plus |
Cht9-PA | 368 | CG10531-PA | 3..366 | 2..371 | 1274 | 63 | Plus |
Cht8-PA | 476 | CG9357-PA | 26..473 | 21..464 | 982 | 43.6 | Plus |
Cht2-PB | 484 | CG2054-PB | 40..428 | 23..370 | 723 | 39.9 | Plus |
Cht2-PC | 484 | CG2054-PC | 40..428 | 23..370 | 723 | 39.9 | Plus |