Clone BO12877 Report

Search the DGRC for BO12877

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12134-RA
Protein status:BO12877.pep: validated full length
Sequenced Size:1267

Clone Sequence Records

BO12877.3prime Sequence

824 bp (731 high quality bases) assembled on 2006-05-08

> BO12877.3prime
ATGGTCTAGAAAGCTTGCATATGGCGCTTGCTTGCGTGATTTCTTCTCCT
TCCTGGCCTTCAGTTTTTCACTGCTGAACGCCGTTCCACTTGCGTCCTGT
GCCCAAACCGTAACAATGCCGGATTCTCCGCCTGTAAAAAGTAAACTTCT
CTTTGAATCGAAAAGACTATCTCTGACGATCTGCTTGTTTCCCTGGAAAT
TGGCCAATGGCTGGAGGCTGTTCTTCGAGGTAACGCTAACGGAGCGCAGG
ATCTCGCCCTTGTTGAAGTTGGTGCCCGCCAACAGAAAGACTCCTCCGTC
TTCCTGATTGTGGGCATTTATCAGGTTGAAGTTTGCGGCTTTTTTTCTCC
TTATTGCCGCCGTAACATCCGGCCGCTCGAAGGATGCCACCTCGTCGCCC
TCCTCGCACTCGTAGCTCTTGAAATCGCCAGTGGTCGTGACGCAGGATAT
GATGTCCTTGTCGTAGACGTTTCTGTGCCACGCCAACCGGGCCACACTGC
TCTCCGTGTTGAAGGTGTTAAGCAGTGCTTCATCCTCGTCCGGCTCCTTC
ACATCGAACACGTTTACTAGCCCGTCCACACTGCCCGTGGCCAGAAGGTC
TGGATTCTGGGCATGGAACCGCAACGAGGTGATATCGTCCTCATGGCTTT
CGAAGTAGACGCCCATTTGCTGGCGCTCCCGAACATCGAAGAACACGAAG
AACGCGTTGCTGTGAAACTGTTCGGTGCCGCAGCAAATAATCCGACCGTT
GGCGTTTCTGTCGAAGCACGAAAGCGATTTGGGCACCGGAGGCACATTAG
GGTGCTGCGTGTACTTGAACCGCG

BO12877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 428..1233 824..19 4005 99.8 Minus
CG12134-PB 1026 CG12134-RB 218..1023 824..19 4005 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1581 CG12134-RB 734..1539 824..19 4015 99.9 Minus
CG12134-RA 1526 CG12134-RA 679..1484 824..19 4015 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971876..9972443 824..257 2825 99.8 Minus
2R 25286936 2R 9972500..9972738 257..19 1195 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:05:51 has no hits.

BO12877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:31 Download gff for BO12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PA 428..1236 15..824 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:45 Download gff for BO12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PB 218..1026 15..824 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:53 Download gff for BO12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 679..1487 15..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:23 Download gff for BO12877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 679..1487 15..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:23 Download gff for BO12877.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971876..9972443 257..824 99 -> Minus
2R 9972501..9972741 15..256 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:53 Download gff for BO12877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5859381..5859948 257..824 99 -> Minus
arm_2R 5860006..5860246 15..256 99   Minus

BO12877.5prime Sequence

861 bp (736 high quality bases) assembled on 2006-05-08

> BO12877.5prime
GAAGTTATCAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTG
CGAGGGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAG
GACACTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAA
GCCGCAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCC
TGGCCGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCA
GCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTT
TAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCG
TTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGAT
GGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTT
CAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGT
GCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAG
TTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCA
AATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGT
TCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTA
GTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAA
CACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACG
TCTACGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAG
AGCTACGAGTG

BO12877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 1236 CG12134-RA 1..845 17..861 4225 100 Plus
CG12134-PB 1026 CG12134-RB 1..635 227..861 3175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1526 CG12134-RA 252..1096 17..861 4225 100 Plus
CG12134-RB 1581 CG12134-RB 333..1151 43..861 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971475..9972293 43..861 4095 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:39:21 has no hits.

BO12877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:32 Download gff for BO12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:46 Download gff for BO12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:38 Download gff for BO12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 247..1096 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:39 Download gff for BO12877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 247..1096 9..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:39 Download gff for BO12877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9971477..9972293 45..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:38 Download gff for BO12877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5858982..5859798 45..861 100   Plus

BO12877.complete Sequence

1267 bp assembled on 2006-10-11

GenBank Submission: FJ632621

> BO12877.complete
GAAGTTATCAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTG
CGAGGGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAG
GACACTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAA
GCCGCAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCC
TGGCCGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCA
GCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTT
TAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCG
TTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGAT
GGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTT
CAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGT
GCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAG
TTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCA
AATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGT
TCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTA
GTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAA
CACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACG
TCTACGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAG
AGCTACGAGTGCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGA
TGTTACGGCGGCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAA
ATGCCCACAATCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAAC
TTCAACAAGGGCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAG
CCTCCAGCCATTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATA
GTCTTTTCGATTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGC
ATTGTTACGGTTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGA
AAAACTGAAGGCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATG
CAAGCTTTCTAGACCAT

BO12877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1236 CG12134-PA 1..1233 17..1249 6165 100 Plus
CG12134-RB 1026 CG12134-PB 1..1023 227..1249 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1526 CG12134-RA 252..1484 17..1249 6165 100 Plus
CG12134-RB 1581 CG12134-RB 333..1539 43..1249 6035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971475..9972443 43..1011 4845 100 Plus
2R 25286936 2R 9972500..9972738 1011..1249 1195 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:43:08 has no hits.

BO12877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:35 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 17..1253 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:50 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 241..1481 9..1253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:46 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 252..1484 17..1251 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:35 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 241..1481 9..1253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:10 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 252..1484 17..1251 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:10 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9972501..9972738 1012..1251 99   Plus
2R 9971394..9971421 17..44 100 -> Plus
2R 9971477..9972443 45..1011 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:46 Download gff for BO12877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5858899..5858926 17..44 100 -> Plus
arm_2R 5858982..5859948 45..1011 100 -> Plus
arm_2R 5860006..5860243 1012..1251 99   Plus

BO12877.pep Sequence

Translation from 16 to 1267

> BO12877.pep
MSDFNKYCEEAAREALPDSEDEEDIGDEDTCSAQDLAAEFQLKYKPQDEV
SVSLQREYVLSLAADQGFSRMAAGLSNSAVHIYNLDSGAGKLENFSYLPP
TDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQH
PNVPPVPKSLSCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYF
ESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALLNTFNTE
SSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAI
RRKKAANFNLINAHNQEDGGVFLLAGTNFNKGEILRSVSVTSKNSLQPLA
NFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGTAFSSEKLKAR
KEKKSRKQAPYASFLDH

BO12877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 411 CG12134-PA 1..411 1..411 2136 100 Plus
CG12134-PB 341 CG12134-PB 1..341 71..411 1778 100 Plus