Clone Sequence Records
BO12878.3prime Sequence
865 bp (701 high quality bases) assembled on 2006-05-08
> BO12878.3prime
ATGGTCTAGAAAGCTTGCCTTGTACTCCTGGTTGAGCTGGCGACCAATCA
GCCAGCGTCTGATCTCGGAGGTTCCTGCGCCAATCTCGTATAGTTTAGCA
TCTCGCAGGATGCGACCAGTGGGATTCTCGTTAATGTAGCCATTGCCACC
TAGGATCTGAATGGCATCGAGCGCCACCTTGGTGGCTTTCTCGGCGGTGT
AGAGAATAACGCCAGCACAATCTTTGGGACTGCGATTGCCGGCGTCACAG
GATCTGGCCACCGTGTACAAATAGCTCCTGCACGCACTCAGTGTGGTGTA
CATATCGGCCATCTTTCCTTGCAGCAACTGGAATTCTCCAATTAACTTGT
TCATCTGCTTGCGCTGGTGGGCATAGTCGAAAGCCACGTCGCAAGCGGCC
TGCATCAGACCCACGGGTCCGGCGGCCAGCACTAGTCGTTCAAAGTCCAA
TCCCGACATGAGCACATAGACGCCCCTGTTCTCCTGGCCCAGAATATTCT
TGGCCGGCACCTTCAGATCCTGGAAGACCAGCTCACAGGTACTGCTGCCT
CGCATGCCCAACTTGTCCAGCTTTTGGGCCACACTGAATCCTTCCCAGGC
GGTTTCGACTATGAAAGCGGTAATGCCGTGCTTGTCCGGAACACCGCTGC
CTCCTGTCTTGGCATAGACTATCAAGGTATCCGCATCAGATCCATTTGTG
ATCCAGAATTTTGATCCATTCAGGACATAGTAGTCTCCCTTGCGCTCCGC
ACGCAGCTTCATGGATACGACATCGGATCCAGCGCCCGGTTCGGACATGG
CCAGACCTCCAACATGCTCACCACTGCACAGCTTGGGAAGGTACTTCTCC
TTCTGCTCGGGGGTG
BO12878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-PA | 1263 | CG6638-RA | 414..1260 | 865..19 | 4235 | 100 | Minus |
| CG7461-PA | 1968 | CG7461-RA | 582..615 | 865..832 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-RA | 1514 | CG6638-RA | 497..1343 | 865..19 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8574578..8575424 | 19..865 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:05:30 has no hits.
BO12878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:33 Download gff for
BO12878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-PA | 414..1263 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:48 Download gff for
BO12878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-PA | 414..1263 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:48 Download gff for
BO12878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 497..1348 | 14..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:20 Download gff for
BO12878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 497..1348 | 14..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:20 Download gff for
BO12878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8574573..8575424 | 14..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:48 Download gff for
BO12878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8567673..8568524 | 14..865 | 99 | | Plus |
BO12878.5prime Sequence
877 bp (780 high quality bases) assembled on 2006-05-08
> BO12878.5prime
GAAGTTATCAGTCGACATGGCTCTGAGATTTGTGGCCCAGTCATGCAGAT
CCTTGCTGCAACGTGGCGATCGTCCTTTGTCTTGGACCCGTACCCTCGCC
CATTATCCCGTCAACGATGCGATGTTCGGTCTGGATGAGGATCGCCAAAA
GCTGCGGGAAGTCGCCTTCAATTTCTTTCAGAAGGAATTGGCGCCTCTGG
CCAAGGAAATCGACAAATTGGATAATTTCAAGGACATGCGCCCCTTCTGG
AAGAAACTAGGTGCTCTTGGCTTTTTGGGCATCACGGCGGAGCCAGATTT
TGGTGGCACTGGGGGCAGCTATTTGGACCACTGCATCATCATGGAGGAAT
TCTCCCGTGCTGCTGGTGGCGTGGCCTTGTCGTACGGAGCACACTCCAAT
CTGTGCATCAATCAGCTGACAAAGAACGGCACCCCCGAGCAGAAGGAGAA
GTACCTTCCCAAGCTGTGCAGTGGTGAGCATGTTGGAGGTCTGGCCATGT
CCGAACCGGGCGCTGGATCCGATGTCGTATCCATGAAGCTGCGTGCGGAG
CGCAAGGGAGACTACTATGTCCTGAATGGATCAAAATTCTGGATCACAAA
TGGATCTGATGCGGATACCTTGATAGTCTATGCCAAGACAGGAGGCAGCG
GTGTTCCGGACAAGCACGGCATTACCGCTTTCATAGTCGAAACCGCCTGG
GAAGGATTCAGTGTGGCCCAAAAGCTGGACAAGTTGGGCATGCGAGGCAG
CAGTACCTGTGAGCTGGTCTTCCAGGATCTGAAGGTGCCGGCCAAGATCA
TCTGGGGCAGGAGAACAGGGGCGTCTATGTGCTCATGTCGGGATTGGACT
TTGAACGACTAGTGCTGGCCGCCGGAC
BO12878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-PA | 1263 | CG6638-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
| CG6638-PA | 1263 | CG6638-RA | 786..862 | 801..877 | 360 | 98.7 | Plus |
| CG7461-PA | 1968 | CG7461-RA | 578..615 | 426..463 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-RA | 1514 | CG6638-RA | 83..945 | 16..877 | 4245 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8574976..8575497 | 877..357 | 2515 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8575780..8575996 | 232..16 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 8575599..8575724 | 357..232 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:13:50 has no hits.
BO12878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:34 Download gff for
BO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-PA | 1..862 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:50 Download gff for
BO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-PA | 1..862 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:38 Download gff for
BO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 78..945 | 7..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:02 Download gff for
BO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 78..945 | 7..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:02 Download gff for
BO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8574976..8575496 | 358..877 | 99 | <- | Minus |
| 3L | 8575599..8575724 | 232..357 | 100 | <- | Minus |
| 3L | 8575781..8576001 | 7..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:38 Download gff for
BO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8568076..8568596 | 358..877 | 99 | <- | Minus |
| arm_3L | 8568699..8568824 | 232..357 | 100 | <- | Minus |
| arm_3L | 8568881..8569101 | 7..231 | 98 | | Minus |
BO12878.complete Sequence
1294 bp assembled on 2006-10-11
GenBank Submission: FJ632622
> BO12878.complete
GAAGTTATCAGTCGACATGGCTCTGAGATTTGTGGCCCAGTCATGCAGAT
CCTTGCTGCAACGTGGCGATCGTCCTTTGTCTTGGACCCGTACCCTCGCC
CATTATCCCGTCAACGATGCGATGTTCGGTCTGGATGAGGATCGCCAAAA
GCTGCGGGAAGTCGCCTTCAATTTCTTTCAGAAGGAATTGGCGCCTCTGG
CCAAGGAAATCGACAAATTGGATAATTTCAAGGACATGCGCCCCTTCTGG
AAGAAACTAGGTGCTCTTGGCTTTTTGGGCATCACGGCGGAGCCAGATTT
TGGTGGCACTGGGGGCAGCTATTTGGACCACTGCATCATCATGGAGGAAT
TCTCCCGTGCTGCTGGTGGCGTGGCCTTGTCGTACGGAGCACACTCCAAT
CTGTGCATCAATCAGCTGACAAAGAACGGCACCCCCGAGCAGAAGGAGAA
GTACCTTCCCAAGCTGTGCAGTGGTGAGCATGTTGGAGGTCTGGCCATGT
CCGAACCGGGCGCTGGATCCGATGTCGTATCCATGAAGCTGCGTGCGGAG
CGCAAGGGAGACTACTATGTCCTGAATGGATCAAAATTCTGGATCACAAA
TGGATCTGATGCGGATACCTTGATAGTCTATGCCAAGACAGGAGGCAGCG
GTGTTCCGGACAAGCACGGCATTACCGCTTTCATAGTCGAAACCGCCTGG
GAAGGATTCAGTGTGGCCCAAAAGCTGGACAAGTTGGGCATGCGAGGCAG
CAGTACCTGTGAGCTGGTCTTCCAGGATCTGAAGGTGCCGGCCAAGAATA
TTCTGGGCCAGGAGAACAGGGGCGTCTATGTGCTCATGTCGGGATTGGAC
TTTGAACGACTAGTGCTGGCCGCCGGACCCGTGGGTCTGATGCAGGCCGC
TTGCGACGTGGCTTTCGACTATGCCCACCAGCGCAAGCAGATGAACAAGT
TAATTGGAGAATTCCAGTTGCTGCAAGGAAAGATGGCCGATATGTACACC
ACACTGAGTGCGTGCAGGAGCTATTTGTACACGGTGGCCAGATCCTGTGA
CGCCGGCAATCGCAGTCCCAAAGATTGTGCTGGCGTTATTCTCTACACCG
CCGAGAAAGCCACCAAGGTGGCGCTCGATGCCATTCAGATCCTAGGTGGC
AATGGCTACATTAACGAGAATCCCACTGGTCGCATCCTGCGAGATGCTAA
ACTATACGAGATTGGCGCAGGAACCTCCGAGATCAGACGCTGGCTGATTG
GTCGCCAGCTCAACCAGGAGTACAAGGCAAGCTTTCTAGACCAT
BO12878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-RA | 1263 | CG6638-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-RA | 1514 | CG6638-RA | 83..1343 | 16..1276 | 6305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8574578..8575497 | 1276..357 | 4600 | 100 | Minus |
| 3L | 28110227 | 3L | 8575780..8575996 | 232..16 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 8575599..8575724 | 357..232 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:52 has no hits.
BO12878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:36 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 1..1263 | 17..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:51 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 73..1343 | 7..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:05 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 84..1343 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:36 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 73..1343 | 7..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:13 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6638-RA | 84..1343 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:13 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8575781..8575995 | 17..231 | 100 | | Minus |
| 3L | 8574575..8575496 | 358..1278 | 99 | <- | Minus |
| 3L | 8575599..8575724 | 232..357 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:05 Download gff for
BO12878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8567675..8568596 | 358..1278 | 99 | <- | Minus |
| arm_3L | 8568699..8568824 | 232..357 | 100 | <- | Minus |
| arm_3L | 8568881..8569095 | 17..231 | 100 | | Minus |
BO12878.pep Sequence
Translation from 16 to 1294
> BO12878.pep
MALRFVAQSCRSLLQRGDRPLSWTRTLAHYPVNDAMFGLDEDRQKLREVA
FNFFQKELAPLAKEIDKLDNFKDMRPFWKKLGALGFLGITAEPDFGGTGG
SYLDHCIIMEEFSRAAGGVALSYGAHSNLCINQLTKNGTPEQKEKYLPKL
CSGEHVGGLAMSEPGAGSDVVSMKLRAERKGDYYVLNGSKFWITNGSDAD
TLIVYAKTGGSGVPDKHGITAFIVETAWEGFSVAQKLDKLGMRGSSTCEL
VFQDLKVPAKNILGQENRGVYVLMSGLDFERLVLAAGPVGLMQAACDVAF
DYAHQRKQMNKLIGEFQLLQGKMADMYTTLSACRSYLYTVARSCDAGNRS
PKDCAGVILYTAEKATKVALDAIQILGGNGYINENPTGRILRDAKLYEIG
AGTSEIRRWLIGRQLNQEYKASFLDH
BO12878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6638-PA | 420 | CG6638-PA | 1..420 | 1..420 | 2195 | 100 | Plus |
| Arc42-PA | 405 | CG4703-PA | 23..403 | 35..419 | 623 | 37.6 | Plus |
| CG4860-PA | 415 | CG4860-PA | 37..411 | 39..418 | 589 | 37 | Plus |
| CG12262-PA | 419 | CG12262-PA | 25..416 | 27..420 | 577 | 35.9 | Plus |
| CG3902-PA | 414 | CG3902-PA | 37..414 | 39..421 | 551 | 33.4 | Plus |
