Clone BO12879 Report

Search the DGRC for BO12879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG5161-RA
Protein status:BO12879.pep: validated full length
Sequenced Size:451

Clone Sequence Records

BO12879.3prime Sequence

449 bp (448 high quality bases) assembled on 2006-05-08

> BO12879.3prime
ATGGTCTAGAAAGCTTGCTGATAACAAATACTTCCGACCAAAGATCTCCG
ACTTCTTCTCAAACATCGGAGATTTAATGGGTGTGTTGATGCGATAGAAG
GCATTCATGGAGTTTTTGATATACGTGTCATACATCTCGTTAAAGAAGTT
CTTGATTCCCTCGTCGTTTTTGTTGTCATGAACGATGATGAATCGTATTT
GGCTGGCTGTGATGAAGGCCGAAACAAACCACTGATTGAATCTATCAATG
GATTTCAGCTGCATATTGGCCGTCTTCCATTTGTGCTCATCCACCAAATC
CAAGGCGGCATGGGCAATAAACTGGGTGAGGTGCCTGTGGTCCTCTTTCC
TTAGTTCCTTGTTCACGGTGCTGAATTCCTTCTCGTAAATGGGATTATCA
TTTTGACCCACAATAACAAAGTAGTATGTGGACATGTCGACTGATAACT

BO12879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5161-PA 420 CG5161-RA 1..417 435..19 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 575 CG5161-RA 51..467 435..19 2085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16131109..16131439 19..349 1655 100 Plus
3L 28110227 3L 16131496..16131582 349..435 435 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:39:09 has no hits.

BO12879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:35 Download gff for BO12879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5161-PA 1..420 15..435 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:52 Download gff for BO12879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5161-PA 1..420 15..435 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:31 Download gff for BO12879.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)72Dh-RA 43..474 10..444 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:47 Download gff for BO12879.3prime
Subject Subject Range Query Range Percent Splice Strand
Trs20-RA 43..474 10..444 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:47 Download gff for BO12879.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16131102..16131438 10..348 98 <- Plus
3L 16131496..16131580 349..433 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:31 Download gff for BO12879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16124202..16124538 10..348 98 <- Plus
arm_3L 16124596..16124680 349..433 100 -> Plus

BO12879.5prime Sequence

449 bp (448 high quality bases) assembled on 2006-05-08

> BO12879.5prime
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCAGCAAGCTTTCTAGACC

BO12879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5161-PA 420 CG5161-RA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 575 CG5161-RA 51..467 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16131109..16131439 433..103 1655 100 Minus
3L 28110227 3L 16131496..16131582 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:42:40 has no hits.

BO12879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:37 Download gff for BO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5161-PA 1..420 17..437 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:53 Download gff for BO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5161-PA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:41:27 Download gff for BO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)72Dh-RA 43..474 8..442 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:49 Download gff for BO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
Trs20-RA 43..474 8..442 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:49 Download gff for BO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16131102..16131438 104..442 98 <- Minus
3L 16131496..16131580 19..103 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:41:27 Download gff for BO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16124596..16124680 19..103 100 -> Minus
arm_3L 16124202..16124538 104..442 98 <- Minus

BO12879.complete Sequence

451 bp assembled on 2006-10-11

GenBank Submission: FJ632623

> BO12879.complete
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCAGCAAGCTTTCTAGACCA
T

BO12879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 420 CG5161-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-RA 575 CG5161-RA 51..467 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16131109..16131439 433..103 1655 100 Minus
3L 28110227 3L 16131496..16131582 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:36:03 has no hits.

BO12879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:02 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
CG5161-RA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:37 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
CG5161-RA 14..445 8..442 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:01 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)72Dh-RA 51..467 17..435 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:02 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
CG5161-RA 14..445 8..442 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:38 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
Trs20-RA 51..467 17..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:38 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16131107..16131438 104..435 99 <- Minus
3L 16131496..16131582 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:01 Download gff for BO12879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16124207..16124538 104..435 99 <- Minus
arm_3L 16124596..16124682 17..103 100   Minus

BO12879.pep Sequence

Translation from 16 to 451

> BO12879.pep
MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDE
HKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNE
MYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLSASFLDH

BO12879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Trs20-PA 139 CG5161-PA 1..139 1..139 735 100 Plus