Clone Sequence Records
BO12879.3prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-08
> BO12879.3prime
ATGGTCTAGAAAGCTTGCTGATAACAAATACTTCCGACCAAAGATCTCCG
ACTTCTTCTCAAACATCGGAGATTTAATGGGTGTGTTGATGCGATAGAAG
GCATTCATGGAGTTTTTGATATACGTGTCATACATCTCGTTAAAGAAGTT
CTTGATTCCCTCGTCGTTTTTGTTGTCATGAACGATGATGAATCGTATTT
GGCTGGCTGTGATGAAGGCCGAAACAAACCACTGATTGAATCTATCAATG
GATTTCAGCTGCATATTGGCCGTCTTCCATTTGTGCTCATCCACCAAATC
CAAGGCGGCATGGGCAATAAACTGGGTGAGGTGCCTGTGGTCCTCTTTCC
TTAGTTCCTTGTTCACGGTGCTGAATTCCTTCTCGTAAATGGGATTATCA
TTTTGACCCACAATAACAAAGTAGTATGTGGACATGTCGACTGATAACT
BO12879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5161-PA | 420 | CG5161-RA | 1..417 | 435..19 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 575 | CG5161-RA | 51..467 | 435..19 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16131109..16131439 | 19..349 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 16131496..16131582 | 349..435 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:39:09 has no hits.
BO12879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:35 Download gff for
BO12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:52 Download gff for
BO12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:02:31 Download gff for
BO12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dh-RA | 43..474 | 10..444 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:47 Download gff for
BO12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs20-RA | 43..474 | 10..444 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:47 Download gff for
BO12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16131102..16131438 | 10..348 | 98 | <- | Plus |
3L | 16131496..16131580 | 349..433 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:02:31 Download gff for
BO12879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16124202..16124538 | 10..348 | 98 | <- | Plus |
arm_3L | 16124596..16124680 | 349..433 | 100 | -> | Plus |
BO12879.5prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-08
> BO12879.5prime
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCAGCAAGCTTTCTAGACC
BO12879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5161-PA | 420 | CG5161-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 575 | CG5161-RA | 51..467 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16131109..16131439 | 433..103 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 16131496..16131582 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:42:40 has no hits.
BO12879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:37 Download gff for
BO12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:53 Download gff for
BO12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:41:27 Download gff for
BO12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dh-RA | 43..474 | 8..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:49 Download gff for
BO12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs20-RA | 43..474 | 8..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:49 Download gff for
BO12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16131102..16131438 | 104..442 | 98 | <- | Minus |
3L | 16131496..16131580 | 19..103 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:41:27 Download gff for
BO12879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16124596..16124680 | 19..103 | 100 | -> | Minus |
arm_3L | 16124202..16124538 | 104..442 | 98 | <- | Minus |
BO12879.complete Sequence
451 bp assembled on 2006-10-11
GenBank Submission: FJ632623
> BO12879.complete
GAAGTTATCAGTCGACATGTCCACATACTACTTTGTTATTGTGGGTCAAA
ATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGGAACTA
AGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCCGCCTT
GGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCTGAAAT
CCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAGCCAGC
CAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGAATCAA
GAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCATGAATG
CCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGAAGAAG
TCGGAGATCTTTGGTCGGAAGTATTTGTTATCAGCAAGCTTTCTAGACCA
T
BO12879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 420 | CG5161-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-RA | 575 | CG5161-RA | 51..467 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16131109..16131439 | 433..103 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 16131496..16131582 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:36:03 has no hits.
BO12879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:02 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-RA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:37 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-RA | 14..445 | 8..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:01 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)72Dh-RA | 51..467 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:02 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5161-RA | 14..445 | 8..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:38 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs20-RA | 51..467 | 17..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:38 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16131107..16131438 | 104..435 | 99 | <- | Minus |
3L | 16131496..16131582 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:01 Download gff for
BO12879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16124207..16124538 | 104..435 | 99 | <- | Minus |
arm_3L | 16124596..16124682 | 17..103 | 100 | | Minus |
BO12879.pep Sequence
Translation from 16 to 451
> BO12879.pep
MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDE
HKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNE
MYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLSASFLDH
BO12879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs20-PA | 139 | CG5161-PA | 1..139 | 1..139 | 735 | 100 | Plus |