Clone BO12880 Report

Search the DGRC for BO12880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG14820-RA
Protein status:BO12880.pep: validated full length
Sequenced Size:1282

Clone Sequence Records

BO12880.3prime Sequence

849 bp (738 high quality bases) assembled on 2006-05-08

> BO12880.3prime
ATGGTCTAGAAAGCTTGCCAATATATCGATTTCCCGTGCAGCGGCTATCA
TGCCCACGAATCCTTCGGTCACCTCGCGTGCCACTGGAATAATATCCTCC
GGAGGAAGGACAAAGCCCAATTCGCCCTTATCGCGCAGCTCTATGGTATA
GTGTATCTTAATGTTCTTCACCGCATAGGCCCATTCCTTGCCCGAACCAG
ATACTTCATATAATGTTGTAGCACTGGATCCATAGGTAAATACTGTGCCA
TATCTTCTATATAGAGCATCCGAGAAGCCCTTGGCTACGTGCATCATTTG
TGGATAGTGTTCGGGGAACTCTAGAGCTGTGTGTCCCCAAGGCGAAAGAA
CATACTGTCCATAGGAATGCAATGAGATATAAATCTTTATAGTGCCTTCA
GGTATGGAGTTGTTTATGTAGGCGGTTAGTTGACTGATCTCGGGATCTGA
TTCTGGTGAGGGACCAGCATATAATTGTGAACAGGGATCCGATTCGGCTC
CAGTCAACATCCACAGGTAATCAAAGTTCCTATTGAGATCAGTTCCAATG
CACTCCCCCGTGGGATCTGAAGGCAGGCGGGACTTTCGCCAAAGACGTTC
CACTTCATGGGAATAAGCAAAGCCATCTGTATTTAGAACGGGAATGATAT
ACCAGTCCACATTCTGAGCTATATCCCTGACTGCCGGGTTACGAGGCACC
AGCAACTCATCGATGAAATAGGTGATCGTCGCTGACGTAATCCATTCGCG
GGCATGAATATTGGACTCTATGAAAACGGCGGGATTTCCCTCTTTGTATG
AAATTTTAACACCTCTAATCGGGCTGCCCCTCGTATGAGTTGCCGATGG

BO12880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 1251 CG14820-RA 438..1248 829..19 4030 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1430 CG14820-RA 453..1282 849..19 4115 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6934070..6934366 506..210 1485 100 Minus
3L 28110227 3L 6933436..6933684 849..600 1185 99.2 Minus
3L 28110227 3L 6934486..6934676 209..19 955 100 Minus
3L 28110227 3L 6933882..6933976 601..507 475 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:39:34 has no hits.

BO12880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:38 Download gff for BO12880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-PA 419..1251 18..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:55 Download gff for BO12880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-PA 419..1251 18..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:10 Download gff for BO12880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 453..1288 10..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:30 Download gff for BO12880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 453..1288 10..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:30 Download gff for BO12880.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6933436..6933683 601..849 99 -> Minus
3L 6933883..6933976 507..600 100 -> Minus
3L 6934070..6934366 210..506 100 -> Minus
3L 6934486..6934682 10..209 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:10 Download gff for BO12880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6926536..6926783 601..849 99 -> Minus
arm_3L 6926983..6927076 507..600 100 -> Minus
arm_3L 6927170..6927466 210..506 100 -> Minus
arm_3L 6927586..6927782 10..209 98   Minus

BO12880.5prime Sequence

864 bp (787 high quality bases) assembled on 2006-05-08

> BO12880.5prime
GAAGTTATCAGTCGACATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCT
TTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATGATAACTACAAGGTA
TACAATGTGAGGATCGATGATCTGGAGCAGTTTAAGCTGCTTCACACGCA
GGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGCTCGTCACTTGGGTG
AATCCTCCGATATAATGCTGCCTCCTGAATATCAGAAGACATTTGAAAGC
CTCTTGACCAAACACAATTTCACCTATAACCTGAAGATCGATAATGTCCA
GACCCACATCGATGCCCAGAGACCCAAACAACGCATTACTTCCATGGAAT
GGACACAGTTTCACACTCTGGAAGAGATATACGCCTGGTTGGATGTGATC
GAGGATCGTTATCCGGATATAGTCACACCCTTTACCATCGGCAACTCATA
CGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATACAAAGAGGGAAATC
CCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCGAATGGATTACGTCA
GCGACGATCACCTATTTCATCGATGAGTTGCTGGTGCCTCGTAACCCGGC
AGTCAGGGATATAGCTCAGAATGTGGACTGGTATATCATTCCCGTTCTAA
ATACAGATGGCTTTGCTTATTCCCATGAAGTGGAACGTCTTTGGCGAAAG
TCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATTGGAACTGATCTCAA
TAGGAACTTTGATTACCTGTGGATGTTGACTGGAGCCGAATCGGATCCCT
GTTCACAATTATATGCTGGTCCCTCACCAGAATCAGATCCCGAGATCAGT
CAACTAACCGCCTA

BO12880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 1251 CG14820-RA 1..848 17..864 4215 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1430 CG14820-RA 35..882 17..864 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6933166..6933684 165..683 2580 99.8 Plus
3L 28110227 3L 6932960..6933109 17..166 750 100 Plus
3L 28110227 3L 6933882..6933976 682..776 475 100 Plus
3L 28110227 3L 6934070..6934157 777..864 440 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:07:31 has no hits.

BO12880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:39 Download gff for BO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:56 Download gff for BO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:40 Download gff for BO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 26..881 6..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:55 Download gff for BO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 26..881 6..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:55 Download gff for BO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6932951..6933109 6..166 96 -> Plus
3L 6933168..6933683 167..682 99 -> Plus
3L 6933883..6933976 683..776 100 -> Plus
3L 6934070..6934156 777..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:40 Download gff for BO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6926051..6926209 6..166 96 -> Plus
arm_3L 6926268..6926783 167..682 99 -> Plus
arm_3L 6926983..6927076 683..776 100 -> Plus
arm_3L 6927170..6927256 777..863 100   Plus

BO12880.complete Sequence

1282 bp assembled on 2006-10-11

GenBank Submission: FJ632624

> BO12880.complete
GAAGTTATCAGTCGACATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCT
TTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATGATAACTACAAGGTA
TACAATGTGAGGATCGATGATCTGGAGCAGTTTAAGCTGCTTCACACGCA
GGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGCTCGTCACTTGGGTG
AATCCTCCGATATAATGCTGCCTCCTGAATATCAGAAGACATTTGAAAGC
CTCTTGACCAAACACAATTTCACCTATAACCTGAAGATCGATAATGTCCA
GACCCACATCGATGCCCAGAGACCCAAACAACGCATTACTTCCATGGAAT
GGACACAGTTTCACACTCTGGAAGAGATATACGCCTGGTTGGATGTGATC
GAGGATCGTTATCCGGATATAGTCACACCCTTTACCATCGGCAACTCATA
CGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATACAAAGAGGGAAATC
CCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCGAATGGATTACGTCA
GCGACGATCACCTATTTCATCGATGAGTTGCTGGTGCCTCGTAACCCGGC
AGTCAGGGATATAGCTCAGAATGTGGACTGGTATATCATTCCCGTTCTAA
ATACAGATGGCTTTGCTTATTCCCATGAAGTGGAACGTCTTTGGCGAAAG
TCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATTGGAACTGATCTCAA
TAGGAACTTTGATTACCTGTGGATGTTGACTGGAGCCGAATCGGATCCCT
GTTCACAATTATATGCTGGTCCCTCACCAGAATCAGATCCCGAGATCAGT
CAACTAACCGCCTACATAAACAACTCCATACCTGAAGGCACTATAAAGAT
TTATATCTCATTGCATTCCTATGGACAGTATGTTCTTTCGCCTTGGGGAC
ACACAGCTCTAGAGTTCCCCGAACACTATCCACAAATGATGCACGTAGCC
AAGGGCTTCTCGGATGCTCTATATAGAAGATATGGCACAGTATTTACCTA
TGGATCCAGTGCTACAACATTATATGAAGTATCTGGTTCGGGCAAGGAAT
GGGCCTATGCGGTGAAGAACATTAAGATACACTATACCATAGAGCTGCGC
GATAAGGGCGAATTGGGCTTTGTCCTTCCTCCGGAGGATATTATTCCAGT
GGCACGCGAGGTGACCGAAGGATTCGTGGGCATGATAGCCGCTGCACGGG
AAATCGATATATTGGCAAGCTTTCTAGACCAT

BO12880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1251 CG14820-PA 1..1248 17..1264 6225 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1430 CG14820-RA 35..1282 17..1264 6225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6933166..6933684 165..683 2580 99.8 Plus
3L 28110227 3L 6934070..6934366 777..1073 1485 100 Plus
3L 28110227 3L 6934486..6934676 1074..1264 955 100 Plus
3L 28110227 3L 6932960..6933109 17..166 750 100 Plus
3L 28110227 3L 6933882..6933976 682..776 475 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:58:47 has no hits.

BO12880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:37 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:53 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 22..1284 6..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:56 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 40..1282 22..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:37 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 22..1284 6..1273 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:15 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 40..1282 22..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:15 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6934070..6934366 777..1073 100 -> Plus
3L 6934486..6934676 1074..1266 98   Plus
3L 6932965..6933109 22..166 100 -> Plus
3L 6933168..6933683 167..682 99 -> Plus
3L 6933883..6933976 683..776 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:56 Download gff for BO12880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6926983..6927076 683..776 100 -> Plus
arm_3L 6926065..6926209 22..166 100 -> Plus
arm_3L 6926268..6926783 167..682 99 -> Plus
arm_3L 6927170..6927466 777..1073 100 -> Plus
arm_3L 6927586..6927776 1074..1266 98   Plus

BO12880.pep Sequence

Translation from 16 to 1282

> BO12880.pep
MLLKILLVVGLFGLARSVEQVRYDNYKVYNVRIDDLEQFKLLHTQERSLK
LSSWREARHLGESSDIMLPPEYQKTFESLLTKHNFTYNLKIDNVQTHIDA
QRPKQRITSMEWTQFHTLEEIYAWLDVIEDRYPDIVTPFTIGNSYEGRPI
RGVKISYKEGNPAVFIESNIHAREWITSATITYFIDELLVPRNPAVRDIA
QNVDWYIIPVLNTDGFAYSHEVERLWRKSRLPSDPTGECIGTDLNRNFDY
LWMLTGAESDPCSQLYAGPSPESDPEISQLTAYINNSIPEGTIKIYISLH
SYGQYVLSPWGHTALEFPEHYPQMMHVAKGFSDALYRRYGTVFTYGSSAT
TLYEVSGSGKEWAYAVKNIKIHYTIELRDKGELGFVLPPEDIIPVAREVT
EGFVGMIAAAREIDILASFLDH

BO12880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 416 CG14820-PA 1..416 1..416 2202 100 Plus
CG18585-PB 422 CG18585-PB 6..422 2..416 952 45.2 Plus
CG18585-PA 422 CG18585-PA 6..422 2..416 952 45.2 Plus
CG7025-PA 429 CG7025-PA 25..423 19..416 904 45.9 Plus
CG12374-PA 422 CG12374-PA 26..417 22..412 803 39.7 Plus