Clone Sequence Records
BO12880.3prime Sequence
849 bp (738 high quality bases) assembled on 2006-05-08
> BO12880.3prime
ATGGTCTAGAAAGCTTGCCAATATATCGATTTCCCGTGCAGCGGCTATCA
TGCCCACGAATCCTTCGGTCACCTCGCGTGCCACTGGAATAATATCCTCC
GGAGGAAGGACAAAGCCCAATTCGCCCTTATCGCGCAGCTCTATGGTATA
GTGTATCTTAATGTTCTTCACCGCATAGGCCCATTCCTTGCCCGAACCAG
ATACTTCATATAATGTTGTAGCACTGGATCCATAGGTAAATACTGTGCCA
TATCTTCTATATAGAGCATCCGAGAAGCCCTTGGCTACGTGCATCATTTG
TGGATAGTGTTCGGGGAACTCTAGAGCTGTGTGTCCCCAAGGCGAAAGAA
CATACTGTCCATAGGAATGCAATGAGATATAAATCTTTATAGTGCCTTCA
GGTATGGAGTTGTTTATGTAGGCGGTTAGTTGACTGATCTCGGGATCTGA
TTCTGGTGAGGGACCAGCATATAATTGTGAACAGGGATCCGATTCGGCTC
CAGTCAACATCCACAGGTAATCAAAGTTCCTATTGAGATCAGTTCCAATG
CACTCCCCCGTGGGATCTGAAGGCAGGCGGGACTTTCGCCAAAGACGTTC
CACTTCATGGGAATAAGCAAAGCCATCTGTATTTAGAACGGGAATGATAT
ACCAGTCCACATTCTGAGCTATATCCCTGACTGCCGGGTTACGAGGCACC
AGCAACTCATCGATGAAATAGGTGATCGTCGCTGACGTAATCCATTCGCG
GGCATGAATATTGGACTCTATGAAAACGGCGGGATTTCCCTCTTTGTATG
AAATTTTAACACCTCTAATCGGGCTGCCCCTCGTATGAGTTGCCGATGG
BO12880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-PA | 1251 | CG14820-RA | 438..1248 | 829..19 | 4030 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-RA | 1430 | CG14820-RA | 453..1282 | 849..19 | 4115 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6934070..6934366 | 506..210 | 1485 | 100 | Minus |
3L | 28110227 | 3L | 6933436..6933684 | 849..600 | 1185 | 99.2 | Minus |
3L | 28110227 | 3L | 6934486..6934676 | 209..19 | 955 | 100 | Minus |
3L | 28110227 | 3L | 6933882..6933976 | 601..507 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:39:34 has no hits.
BO12880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:38 Download gff for
BO12880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-PA | 419..1251 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:55 Download gff for
BO12880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-PA | 419..1251 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:10 Download gff for
BO12880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 453..1288 | 10..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:30 Download gff for
BO12880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 453..1288 | 10..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:30 Download gff for
BO12880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6933436..6933683 | 601..849 | 99 | -> | Minus |
3L | 6933883..6933976 | 507..600 | 100 | -> | Minus |
3L | 6934070..6934366 | 210..506 | 100 | -> | Minus |
3L | 6934486..6934682 | 10..209 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:10 Download gff for
BO12880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6926536..6926783 | 601..849 | 99 | -> | Minus |
arm_3L | 6926983..6927076 | 507..600 | 100 | -> | Minus |
arm_3L | 6927170..6927466 | 210..506 | 100 | -> | Minus |
arm_3L | 6927586..6927782 | 10..209 | 98 | | Minus |
BO12880.5prime Sequence
864 bp (787 high quality bases) assembled on 2006-05-08
> BO12880.5prime
GAAGTTATCAGTCGACATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCT
TTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATGATAACTACAAGGTA
TACAATGTGAGGATCGATGATCTGGAGCAGTTTAAGCTGCTTCACACGCA
GGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGCTCGTCACTTGGGTG
AATCCTCCGATATAATGCTGCCTCCTGAATATCAGAAGACATTTGAAAGC
CTCTTGACCAAACACAATTTCACCTATAACCTGAAGATCGATAATGTCCA
GACCCACATCGATGCCCAGAGACCCAAACAACGCATTACTTCCATGGAAT
GGACACAGTTTCACACTCTGGAAGAGATATACGCCTGGTTGGATGTGATC
GAGGATCGTTATCCGGATATAGTCACACCCTTTACCATCGGCAACTCATA
CGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATACAAAGAGGGAAATC
CCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCGAATGGATTACGTCA
GCGACGATCACCTATTTCATCGATGAGTTGCTGGTGCCTCGTAACCCGGC
AGTCAGGGATATAGCTCAGAATGTGGACTGGTATATCATTCCCGTTCTAA
ATACAGATGGCTTTGCTTATTCCCATGAAGTGGAACGTCTTTGGCGAAAG
TCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATTGGAACTGATCTCAA
TAGGAACTTTGATTACCTGTGGATGTTGACTGGAGCCGAATCGGATCCCT
GTTCACAATTATATGCTGGTCCCTCACCAGAATCAGATCCCGAGATCAGT
CAACTAACCGCCTA
BO12880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-PA | 1251 | CG14820-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-RA | 1430 | CG14820-RA | 35..882 | 17..864 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6933166..6933684 | 165..683 | 2580 | 99.8 | Plus |
3L | 28110227 | 3L | 6932960..6933109 | 17..166 | 750 | 100 | Plus |
3L | 28110227 | 3L | 6933882..6933976 | 682..776 | 475 | 100 | Plus |
3L | 28110227 | 3L | 6934070..6934157 | 777..864 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:07:31 has no hits.
BO12880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:39 Download gff for
BO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:56 Download gff for
BO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:40 Download gff for
BO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 26..881 | 6..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:55 Download gff for
BO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 26..881 | 6..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:55 Download gff for
BO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6932951..6933109 | 6..166 | 96 | -> | Plus |
3L | 6933168..6933683 | 167..682 | 99 | -> | Plus |
3L | 6933883..6933976 | 683..776 | 100 | -> | Plus |
3L | 6934070..6934156 | 777..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:40 Download gff for
BO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6926051..6926209 | 6..166 | 96 | -> | Plus |
arm_3L | 6926268..6926783 | 167..682 | 99 | -> | Plus |
arm_3L | 6926983..6927076 | 683..776 | 100 | -> | Plus |
arm_3L | 6927170..6927256 | 777..863 | 100 | | Plus |
BO12880.complete Sequence
1282 bp assembled on 2006-10-11
GenBank Submission: FJ632624
> BO12880.complete
GAAGTTATCAGTCGACATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCT
TTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATGATAACTACAAGGTA
TACAATGTGAGGATCGATGATCTGGAGCAGTTTAAGCTGCTTCACACGCA
GGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGCTCGTCACTTGGGTG
AATCCTCCGATATAATGCTGCCTCCTGAATATCAGAAGACATTTGAAAGC
CTCTTGACCAAACACAATTTCACCTATAACCTGAAGATCGATAATGTCCA
GACCCACATCGATGCCCAGAGACCCAAACAACGCATTACTTCCATGGAAT
GGACACAGTTTCACACTCTGGAAGAGATATACGCCTGGTTGGATGTGATC
GAGGATCGTTATCCGGATATAGTCACACCCTTTACCATCGGCAACTCATA
CGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATACAAAGAGGGAAATC
CCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCGAATGGATTACGTCA
GCGACGATCACCTATTTCATCGATGAGTTGCTGGTGCCTCGTAACCCGGC
AGTCAGGGATATAGCTCAGAATGTGGACTGGTATATCATTCCCGTTCTAA
ATACAGATGGCTTTGCTTATTCCCATGAAGTGGAACGTCTTTGGCGAAAG
TCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATTGGAACTGATCTCAA
TAGGAACTTTGATTACCTGTGGATGTTGACTGGAGCCGAATCGGATCCCT
GTTCACAATTATATGCTGGTCCCTCACCAGAATCAGATCCCGAGATCAGT
CAACTAACCGCCTACATAAACAACTCCATACCTGAAGGCACTATAAAGAT
TTATATCTCATTGCATTCCTATGGACAGTATGTTCTTTCGCCTTGGGGAC
ACACAGCTCTAGAGTTCCCCGAACACTATCCACAAATGATGCACGTAGCC
AAGGGCTTCTCGGATGCTCTATATAGAAGATATGGCACAGTATTTACCTA
TGGATCCAGTGCTACAACATTATATGAAGTATCTGGTTCGGGCAAGGAAT
GGGCCTATGCGGTGAAGAACATTAAGATACACTATACCATAGAGCTGCGC
GATAAGGGCGAATTGGGCTTTGTCCTTCCTCCGGAGGATATTATTCCAGT
GGCACGCGAGGTGACCGAAGGATTCGTGGGCATGATAGCCGCTGCACGGG
AAATCGATATATTGGCAAGCTTTCTAGACCAT
BO12880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-RA | 1251 | CG14820-PA | 1..1248 | 17..1264 | 6225 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-RA | 1430 | CG14820-RA | 35..1282 | 17..1264 | 6225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6933166..6933684 | 165..683 | 2580 | 99.8 | Plus |
3L | 28110227 | 3L | 6934070..6934366 | 777..1073 | 1485 | 100 | Plus |
3L | 28110227 | 3L | 6934486..6934676 | 1074..1264 | 955 | 100 | Plus |
3L | 28110227 | 3L | 6932960..6933109 | 17..166 | 750 | 100 | Plus |
3L | 28110227 | 3L | 6933882..6933976 | 682..776 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:47 has no hits.
BO12880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:37 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 1..1251 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:53 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 22..1284 | 6..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:56 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 40..1282 | 22..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:37 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 22..1284 | 6..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:15 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14820-RA | 40..1282 | 22..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:15 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6934070..6934366 | 777..1073 | 100 | -> | Plus |
3L | 6934486..6934676 | 1074..1266 | 98 | | Plus |
3L | 6932965..6933109 | 22..166 | 100 | -> | Plus |
3L | 6933168..6933683 | 167..682 | 99 | -> | Plus |
3L | 6933883..6933976 | 683..776 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:56 Download gff for
BO12880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6926983..6927076 | 683..776 | 100 | -> | Plus |
arm_3L | 6926065..6926209 | 22..166 | 100 | -> | Plus |
arm_3L | 6926268..6926783 | 167..682 | 99 | -> | Plus |
arm_3L | 6927170..6927466 | 777..1073 | 100 | -> | Plus |
arm_3L | 6927586..6927776 | 1074..1266 | 98 | | Plus |
BO12880.pep Sequence
Translation from 16 to 1282
> BO12880.pep
MLLKILLVVGLFGLARSVEQVRYDNYKVYNVRIDDLEQFKLLHTQERSLK
LSSWREARHLGESSDIMLPPEYQKTFESLLTKHNFTYNLKIDNVQTHIDA
QRPKQRITSMEWTQFHTLEEIYAWLDVIEDRYPDIVTPFTIGNSYEGRPI
RGVKISYKEGNPAVFIESNIHAREWITSATITYFIDELLVPRNPAVRDIA
QNVDWYIIPVLNTDGFAYSHEVERLWRKSRLPSDPTGECIGTDLNRNFDY
LWMLTGAESDPCSQLYAGPSPESDPEISQLTAYINNSIPEGTIKIYISLH
SYGQYVLSPWGHTALEFPEHYPQMMHVAKGFSDALYRRYGTVFTYGSSAT
TLYEVSGSGKEWAYAVKNIKIHYTIELRDKGELGFVLPPEDIIPVAREVT
EGFVGMIAAAREIDILASFLDH
BO12880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14820-PA | 416 | CG14820-PA | 1..416 | 1..416 | 2202 | 100 | Plus |
CG18585-PB | 422 | CG18585-PB | 6..422 | 2..416 | 952 | 45.2 | Plus |
CG18585-PA | 422 | CG18585-PA | 6..422 | 2..416 | 952 | 45.2 | Plus |
CG7025-PA | 429 | CG7025-PA | 25..423 | 19..416 | 904 | 45.9 | Plus |
CG12374-PA | 422 | CG12374-PA | 26..417 | 22..412 | 803 | 39.7 | Plus |