Clone BO12881 Report

Search the DGRC for BO12881

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptLvpD-RA
Protein status:BO12881.pep:
Sequenced Size:1735

Clone Sequence Records

BO12881.3prime Sequence

790 bp (783 high quality bases) assembled on 2006-05-08

> BO12881.3prime
ATGGTCTAGAAAGCTTGCAGCCAACCAGCGTAGAACGACTGCTTCGTAGG
GCATGAGAATGATTCTCTGTGACAGATCTGCTTTTTGCCCCGAATAGTGT
GTGGAGTAGGCAGTGGCCAGCACATACTCGTAGGTTTTGGGGGCGAGCCC
ATCGAGGATTTCCATACCGTTGCCCATGTTGACCAGGATTCGATACTCCT
CGCTGATCTTGTTTGTGCGAATGATCTGTAGAACCTGTTCCGTCACCGCC
TCGTAGGAGAAACCTCCATCCTCTTTGAACGCAAGAAAGGCGGAACTGCT
CTTAAGTTCTTGAAGACCCTTAAAGATGTTCAGGGAAGATCTGGAAACAC
CGCGTTCAGTCTGCACATTGTACCGTTGATATTCGGGACTTAGAGGCAGC
CAGGTGGACTCCCCATCAGAGAAGTCGGCATTCTTTCCAGCCGTCCACTG
CATGGGCGTGCGCTCCCCATCGCGATCCTCGCAAGAGTCGCCGGTGCACT
CCACGTCCACGTTGGACATGCCAATTTCCTCGCCGTAGTAGGTTACCGAA
GCACCTGGCAGGGCGTTTACAATCACATTTAGTAGATCCACTTTGTGAGC
TCCCATACGATCGGCCACTCGGTTGGTATCGTGATTACCAACAACCCAAT
TGGCCGTCTGGTGCTCCTTCCACATGGTATTCATCCAGTAGTCGATAGAT
CCCACAACATCCTTGGCGGTGGAGTATCCACTGAGATACATCAACTGGAA
GTTCATGGGCAGCTGGGTACCCTGATGGGTGCTGTTTCCG

BO12881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8694-PA 1704 LvpD-RA 930..1701 790..19 3860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 2036 CG8694-RA 952..1723 790..19 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8454578..8455150 790..218 2865 100 Minus
2R 25286936 2R 8455211..8455341 218..88 655 100 Minus
2R 25286936 2R 8455399..8455469 89..19 355 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:03 has no hits.

BO12881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:40 Download gff for BO12881.3prime
Subject Subject Range Query Range Percent Splice Strand
LvpD-PA 930..1704 15..790 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:57 Download gff for BO12881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8694-PA 930..1704 15..790 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:28 Download gff for BO12881.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 952..1731 8..790 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:05 Download gff for BO12881.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 952..1731 8..790 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:05 Download gff for BO12881.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8454578..8455150 218..790 100 -> Minus
2R 8455212..8455340 89..217 100 -> Minus
2R 8455400..8455477 8..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:28 Download gff for BO12881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4342083..4342655 218..790 100 -> Minus
arm_2R 4342717..4342845 89..217 100 -> Minus
arm_2R 4342905..4342982 8..88 95   Minus

BO12881.5prime Sequence

828 bp (756 high quality bases) assembled on 2006-05-08

> BO12881.5prime
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACC
GGTTAGCGGTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCCAC
ATCTACACCAAGGACCAGCCGGCCACGG

BO12881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8694-PA 1704 LvpD-RA 1..781 17..797 3905 100 Plus
CG8694-PA 1704 LvpD-RA 781..811 798..828 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 2036 CG8694-RA 18..833 12..828 4045 99.8 Plus
Mal-A6-RC 1892 CG30360-RC 163..515 119..471 460 75.4 Plus
Mal-A6-RD 2291 CG30360-RD 163..515 119..471 460 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8453644..8454459 12..828 4020 99.8 Plus
2R 25286936 2R 8465320..8465672 119..471 460 75.4 Plus
2R 25286936 2R 8471170..8471538 463..95 360 73.2 Minus
2R 25286936 2R 8463133..8463335 197..399 250 74.9 Plus
2R 25286936 2R 8472103..8472452 119..468 235 71.1 Plus
2L 23513712 2L 11850478..11850615 119..256 195 76.1 Plus
Blast to na_te.dros performed on 2015-02-09 09:02:13 has no hits.

BO12881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:41 Download gff for BO12881.5prime
Subject Subject Range Query Range Percent Splice Strand
LvpD-PA 1..811 17..828 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:58 Download gff for BO12881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8694-PA 1..811 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:22 Download gff for BO12881.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 18..833 12..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:07 Download gff for BO12881.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 18..833 12..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:07 Download gff for BO12881.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8453644..8454459 12..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:22 Download gff for BO12881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4341149..4341964 12..828 99   Plus

BO12881.complete Sequence

1735 bp assembled on 2008-01-17

GenBank Submission: FJ632625

> BO12881.complete
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACC
GGTTAGCGGTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACA
TCTACACCAAGGACCAGCCGGCCACGGTGGATCTCATGTACGAATGGCGT
GAGTTTTTGGACAACTATCGGGCGCAGAATGGAGGCGATTCACGGGTTCT
CCTGGCCGAGGCCTATTCTTCCGTGGAGACACTAAGTGCTTACTTCGGAA
ACAGCACCCATCAGGGTACCCAGCTGCCCATGAACTTCCAGTTGATGTAT
CTCAGTGGATACTCCACCGCCAAGGATGTTGTGGGATCTATCGACTACTG
GATGAATACCATGTGGAAGGAGCACCAGACGGCCAATTGGGTTGTTGGTA
ATCACGATACCAACCGAGTGGCCGATCGTATGGGAGCTCACAAAGTGGAT
CTACTAAATGTGATTGTAAACGCCCTGCCAGGTGCTTCGGTAACCTACTA
CGGCGAGGAAATTGGCATGTCCAACGTGGACGTGGAGTGCACCGGCGACT
CTTGCGAGGATCGCGATGGGGAGCGCACGCCCATGCAGTGGACGGCTGGA
AAGAATGCCGACTTCTCTGATGGGGAGTCCACCTGGCTGCCTCTAAGTCC
CGAATATCAACGGTACAATGTGCAGACTGAACGCGGTGTTTCCAGATCTT
CCCTGAACATCTTTAAGGGTCTTCAAGAACTTAAGAGCAGTTCCGCCTTT
CTTGCGTTCAAAGAGGATGGAGGTTTCTCCTACGAGGCGGTGACGGAACA
GGTTCTACAGATCATTCGCACAAACAAGATCAGCGAGGAGTATCGAATCC
TGGTCAACATGGGCAACGGTATGGAAATCCTCGATGGGCTCGCCCCCAAA
ACCTACGAGTATGTGCTGGCCACTGCCTACTCCACACACTATTCGGGGCA
AAAAGCAGATCTGTCACAGAGAATCATTCTCATGCCCTACGAAGCAGTCG
TTCTACGCTGGTTGGCTGCAAGCTTTCTAGACCAT

BO12881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 1704 CG8694-PA 1..1701 17..1717 8505 100 Plus
Mal-A6-RC 1806 CG30360-PC 151..503 119..471 460 75.4 Plus
Mal-A6-RD 1806 CG30360-PD 151..503 119..471 460 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 2036 CG8694-RA 18..1723 12..1717 8515 99.9 Plus
Mal-A6-RC 1892 CG30360-RC 163..515 119..471 460 75.4 Plus
Mal-A6-RD 2291 CG30360-RD 163..515 119..471 460 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8453644..8455150 12..1518 7520 99.9 Plus
2R 25286936 2R 8455211..8455341 1518..1648 655 100 Plus
2R 25286936 2R 8465320..8465672 119..471 460 75.4 Plus
2R 25286936 2R 8471170..8471538 463..95 360 73.2 Minus
2R 25286936 2R 8455399..8455469 1647..1717 355 100 Plus
2R 25286936 2R 8463133..8463335 197..399 250 74.9 Plus
2R 25286936 2R 8472103..8472452 119..468 235 71.1 Plus
2L 23513712 2L 11850478..11850615 119..256 195 76.1 Plus
Blast to na_te.dros performed on 2014-11-27 12:59:43 has no hits.

BO12881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:09 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
LvpD-RA 1..1704 17..1721 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:42 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
LvpD-RA 18..1718 17..1719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:41 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 23..1723 17..1719 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:09 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
LvpD-RA 13..1726 12..1728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:52 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 23..1723 17..1719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:52 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8453649..8455150 17..1518 100 -> Plus
2R 8455212..8455340 1519..1647 100 -> Plus
2R 8455400..8455469 1648..1719 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:41 Download gff for BO12881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4341154..4342655 17..1518 100 -> Plus
arm_2R 4342717..4342845 1519..1647 100 -> Plus
arm_2R 4342905..4342974 1648..1719 97   Plus

BO12881.pep Sequence

Translation from 16 to 1735

> BO12881.pep
MPKWAHLGLAALLLISTTQEGTADIDWWENASLYQIYPRSFQDSDGDGIG
DLKGITSRLGYLKEIGITATWLSPIFTSPMSDFGYDISNFYDIDPIFGTL
EDFDDLIVEAKSLGVKIILDFVPNHSSDENVWFEKSVNREDGYDDFYVWD
DGKLNEETGARDPPSNWVSVFSGPMWTWNEKRQQYFLHQFQVKQPDLNFT
NPMVREHMLDVLKFWLDRGVDGFRIDAVPHIYEHRNADGSYPDEPVSGWG
SDPNAYDYHDHIYTKDQPATVDLMYEWREFLDNYRAQNGGDSRVLLAEAY
SSVETLSAYFGNSTHQGTQLPMNFQLMYLSGYSTAKDVVGSIDYWMNTMW
KEHQTANWVVGNHDTNRVADRMGAHKVDLLNVIVNALPGASVTYYGEEIG
MSNVDVECTGDSCEDRDGERTPMQWTAGKNADFSDGESTWLPLSPEYQRY
NVQTERGVSRSSLNIFKGLQELKSSSAFLAFKEDGGFSYEAVTEQVLQII
RTNKISEEYRILVNMGNGMEILDGLAPKTYEYVLATAYSTHYSGQKADLS
QRIILMPYEAVVLRWLAASFLDH

BO12881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-PA 567 CG8694-PA 1..567 1..567 3055 100 Plus
Mal-A4-PA 579 CG8693-PA 24..574 27..564 1412 49.6 Plus
Mal-A3-PA 574 CG8695-PA 10..571 14..563 1367 49 Plus
Mal-A5-PA 630 CG30359-PA 40..594 23..564 1367 48.6 Plus
Mal-A6-PC 601 CG30360-PC 20..598 7..563 1360 46.8 Plus