Clone Sequence Records
BO12881.3prime Sequence
790 bp (783 high quality bases) assembled on 2006-05-08
> BO12881.3prime
ATGGTCTAGAAAGCTTGCAGCCAACCAGCGTAGAACGACTGCTTCGTAGG
GCATGAGAATGATTCTCTGTGACAGATCTGCTTTTTGCCCCGAATAGTGT
GTGGAGTAGGCAGTGGCCAGCACATACTCGTAGGTTTTGGGGGCGAGCCC
ATCGAGGATTTCCATACCGTTGCCCATGTTGACCAGGATTCGATACTCCT
CGCTGATCTTGTTTGTGCGAATGATCTGTAGAACCTGTTCCGTCACCGCC
TCGTAGGAGAAACCTCCATCCTCTTTGAACGCAAGAAAGGCGGAACTGCT
CTTAAGTTCTTGAAGACCCTTAAAGATGTTCAGGGAAGATCTGGAAACAC
CGCGTTCAGTCTGCACATTGTACCGTTGATATTCGGGACTTAGAGGCAGC
CAGGTGGACTCCCCATCAGAGAAGTCGGCATTCTTTCCAGCCGTCCACTG
CATGGGCGTGCGCTCCCCATCGCGATCCTCGCAAGAGTCGCCGGTGCACT
CCACGTCCACGTTGGACATGCCAATTTCCTCGCCGTAGTAGGTTACCGAA
GCACCTGGCAGGGCGTTTACAATCACATTTAGTAGATCCACTTTGTGAGC
TCCCATACGATCGGCCACTCGGTTGGTATCGTGATTACCAACAACCCAAT
TGGCCGTCTGGTGCTCCTTCCACATGGTATTCATCCAGTAGTCGATAGAT
CCCACAACATCCTTGGCGGTGGAGTATCCACTGAGATACATCAACTGGAA
GTTCATGGGCAGCTGGGTACCCTGATGGGTGCTGTTTCCG
BO12881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8694-PA | 1704 | LvpD-RA | 930..1701 | 790..19 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 952..1723 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8454578..8455150 | 790..218 | 2865 | 100 | Minus |
2R | 25286936 | 2R | 8455211..8455341 | 218..88 | 655 | 100 | Minus |
2R | 25286936 | 2R | 8455399..8455469 | 89..19 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:19:03 has no hits.
BO12881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:40 Download gff for
BO12881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-PA | 930..1704 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:57 Download gff for
BO12881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8694-PA | 930..1704 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:28 Download gff for
BO12881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 952..1731 | 8..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:05 Download gff for
BO12881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 952..1731 | 8..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:05 Download gff for
BO12881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8454578..8455150 | 218..790 | 100 | -> | Minus |
2R | 8455212..8455340 | 89..217 | 100 | -> | Minus |
2R | 8455400..8455477 | 8..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:28 Download gff for
BO12881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4342083..4342655 | 218..790 | 100 | -> | Minus |
arm_2R | 4342717..4342845 | 89..217 | 100 | -> | Minus |
arm_2R | 4342905..4342982 | 8..88 | 95 | | Minus |
BO12881.5prime Sequence
828 bp (756 high quality bases) assembled on 2006-05-08
> BO12881.5prime
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACC
GGTTAGCGGTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCCAC
ATCTACACCAAGGACCAGCCGGCCACGG
BO12881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8694-PA | 1704 | LvpD-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8694-PA | 1704 | LvpD-RA | 781..811 | 798..828 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 18..833 | 12..828 | 4045 | 99.8 | Plus |
Mal-A6-RC | 1892 | CG30360-RC | 163..515 | 119..471 | 460 | 75.4 | Plus |
Mal-A6-RD | 2291 | CG30360-RD | 163..515 | 119..471 | 460 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8453644..8454459 | 12..828 | 4020 | 99.8 | Plus |
2R | 25286936 | 2R | 8465320..8465672 | 119..471 | 460 | 75.4 | Plus |
2R | 25286936 | 2R | 8471170..8471538 | 463..95 | 360 | 73.2 | Minus |
2R | 25286936 | 2R | 8463133..8463335 | 197..399 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8472103..8472452 | 119..468 | 235 | 71.1 | Plus |
2L | 23513712 | 2L | 11850478..11850615 | 119..256 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:02:13 has no hits.
BO12881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:41 Download gff for
BO12881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-PA | 1..811 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:58 Download gff for
BO12881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8694-PA | 1..811 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:22 Download gff for
BO12881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 18..833 | 12..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:07 Download gff for
BO12881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 18..833 | 12..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:07 Download gff for
BO12881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8453644..8454459 | 12..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:22 Download gff for
BO12881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4341149..4341964 | 12..828 | 99 | | Plus |
BO12881.complete Sequence
1735 bp assembled on 2008-01-17
GenBank Submission: FJ632625
> BO12881.complete
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACC
GGTTAGCGGTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACA
TCTACACCAAGGACCAGCCGGCCACGGTGGATCTCATGTACGAATGGCGT
GAGTTTTTGGACAACTATCGGGCGCAGAATGGAGGCGATTCACGGGTTCT
CCTGGCCGAGGCCTATTCTTCCGTGGAGACACTAAGTGCTTACTTCGGAA
ACAGCACCCATCAGGGTACCCAGCTGCCCATGAACTTCCAGTTGATGTAT
CTCAGTGGATACTCCACCGCCAAGGATGTTGTGGGATCTATCGACTACTG
GATGAATACCATGTGGAAGGAGCACCAGACGGCCAATTGGGTTGTTGGTA
ATCACGATACCAACCGAGTGGCCGATCGTATGGGAGCTCACAAAGTGGAT
CTACTAAATGTGATTGTAAACGCCCTGCCAGGTGCTTCGGTAACCTACTA
CGGCGAGGAAATTGGCATGTCCAACGTGGACGTGGAGTGCACCGGCGACT
CTTGCGAGGATCGCGATGGGGAGCGCACGCCCATGCAGTGGACGGCTGGA
AAGAATGCCGACTTCTCTGATGGGGAGTCCACCTGGCTGCCTCTAAGTCC
CGAATATCAACGGTACAATGTGCAGACTGAACGCGGTGTTTCCAGATCTT
CCCTGAACATCTTTAAGGGTCTTCAAGAACTTAAGAGCAGTTCCGCCTTT
CTTGCGTTCAAAGAGGATGGAGGTTTCTCCTACGAGGCGGTGACGGAACA
GGTTCTACAGATCATTCGCACAAACAAGATCAGCGAGGAGTATCGAATCC
TGGTCAACATGGGCAACGGTATGGAAATCCTCGATGGGCTCGCCCCCAAA
ACCTACGAGTATGTGCTGGCCACTGCCTACTCCACACACTATTCGGGGCA
AAAAGCAGATCTGTCACAGAGAATCATTCTCATGCCCTACGAAGCAGTCG
TTCTACGCTGGTTGGCTGCAAGCTTTCTAGACCAT
BO12881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 1704 | CG8694-PA | 1..1701 | 17..1717 | 8505 | 100 | Plus |
Mal-A6-RC | 1806 | CG30360-PC | 151..503 | 119..471 | 460 | 75.4 | Plus |
Mal-A6-RD | 1806 | CG30360-PD | 151..503 | 119..471 | 460 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 18..1723 | 12..1717 | 8515 | 99.9 | Plus |
Mal-A6-RC | 1892 | CG30360-RC | 163..515 | 119..471 | 460 | 75.4 | Plus |
Mal-A6-RD | 2291 | CG30360-RD | 163..515 | 119..471 | 460 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8453644..8455150 | 12..1518 | 7520 | 99.9 | Plus |
2R | 25286936 | 2R | 8455211..8455341 | 1518..1648 | 655 | 100 | Plus |
2R | 25286936 | 2R | 8465320..8465672 | 119..471 | 460 | 75.4 | Plus |
2R | 25286936 | 2R | 8471170..8471538 | 463..95 | 360 | 73.2 | Minus |
2R | 25286936 | 2R | 8455399..8455469 | 1647..1717 | 355 | 100 | Plus |
2R | 25286936 | 2R | 8463133..8463335 | 197..399 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8472103..8472452 | 119..468 | 235 | 71.1 | Plus |
2L | 23513712 | 2L | 11850478..11850615 | 119..256 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:59:43 has no hits.
BO12881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:09 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-RA | 1..1704 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:42 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-RA | 18..1718 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:41 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 23..1723 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:09 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-RA | 13..1726 | 12..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:52 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 23..1723 | 17..1719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:52 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8453649..8455150 | 17..1518 | 100 | -> | Plus |
2R | 8455212..8455340 | 1519..1647 | 100 | -> | Plus |
2R | 8455400..8455469 | 1648..1719 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:41 Download gff for
BO12881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4341154..4342655 | 17..1518 | 100 | -> | Plus |
arm_2R | 4342717..4342845 | 1519..1647 | 100 | -> | Plus |
arm_2R | 4342905..4342974 | 1648..1719 | 97 | | Plus |
BO12881.pep Sequence
Translation from 16 to 1735
> BO12881.pep
MPKWAHLGLAALLLISTTQEGTADIDWWENASLYQIYPRSFQDSDGDGIG
DLKGITSRLGYLKEIGITATWLSPIFTSPMSDFGYDISNFYDIDPIFGTL
EDFDDLIVEAKSLGVKIILDFVPNHSSDENVWFEKSVNREDGYDDFYVWD
DGKLNEETGARDPPSNWVSVFSGPMWTWNEKRQQYFLHQFQVKQPDLNFT
NPMVREHMLDVLKFWLDRGVDGFRIDAVPHIYEHRNADGSYPDEPVSGWG
SDPNAYDYHDHIYTKDQPATVDLMYEWREFLDNYRAQNGGDSRVLLAEAY
SSVETLSAYFGNSTHQGTQLPMNFQLMYLSGYSTAKDVVGSIDYWMNTMW
KEHQTANWVVGNHDTNRVADRMGAHKVDLLNVIVNALPGASVTYYGEEIG
MSNVDVECTGDSCEDRDGERTPMQWTAGKNADFSDGESTWLPLSPEYQRY
NVQTERGVSRSSLNIFKGLQELKSSSAFLAFKEDGGFSYEAVTEQVLQII
RTNKISEEYRILVNMGNGMEILDGLAPKTYEYVLATAYSTHYSGQKADLS
QRIILMPYEAVVLRWLAASFLDH
BO12881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-PA | 567 | CG8694-PA | 1..567 | 1..567 | 3055 | 100 | Plus |
Mal-A4-PA | 579 | CG8693-PA | 24..574 | 27..564 | 1412 | 49.6 | Plus |
Mal-A3-PA | 574 | CG8695-PA | 10..571 | 14..563 | 1367 | 49 | Plus |
Mal-A5-PA | 630 | CG30359-PA | 40..594 | 23..564 | 1367 | 48.6 | Plus |
Mal-A6-PC | 601 | CG30360-PC | 20..598 | 7..563 | 1360 | 46.8 | Plus |