Clone Sequence Records
BO12882.3prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-08
> BO12882.3prime
ATGGTCTAGAAAGCTTGCCTTCGGCGGACTGGACTCCGCACCGCCGGCGA
TGGCTGGGGATTGGGCAAAGTCCTGGAACGTGTCCTTGACCTTCTTGAGG
CCCCTGCCTGCGTAGCAGGGCAGCATGTGGATGAAACGGAAGGTGTTCTT
CACGCCCTCGTTGTAGTAGTGCTTGGCCAGGAAGCGCATCTCGCCGGTTT
TGGGCAACTGCGGCACTTCGAAGGGCAGCTGCTTCTCCAGCTTCTGGACA
TGCGGGCGCAGCTCCGACTTGATGTCGTTGTACAGCTTGTCCGTCTGGTC
AGAGTCTCCCCAGATGCCCACCTTTTGTGTGTAGTAGACGGTTGCGGCCA
CCAGACCGCCGCGCACTAGAAATCCTAGAACCATGTCGACTGATAACT
BO12882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-PA | 369 | CG7603-RA | 1..366 | 384..19 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 762 | CG7603-RA | 180..547 | 386..19 | 1840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17466198..17466553 | 374..19 | 1780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:39:10 has no hits.
BO12882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:42 Download gff for
BO12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-PA | 1..369 | 15..384 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:01 Download gff for
BO12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-PA | 1..369 | 15..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:40 Download gff for
BO12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 180..553 | 12..386 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:31 Download gff for
BO12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 180..553 | 12..386 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:31 Download gff for
BO12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17466199..17466559 | 12..373 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:40 Download gff for
BO12882.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17459299..17459659 | 12..373 | 99 | | Minus |
BO12882.5prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-08
> BO12882.5prime
GAAGTTATCAGTCGACATGGTTCTAGGATTTCTAGTGCGCGGCGGTCTGG
TGGCCGCAACCGTCTACTACACACAAAAGGTGGGCATCTGGGGAGACTCT
GACCAGACGGACAAGCTGTACAACGACATCAAGTCGGAGCTGCGCCCGCA
TGTCCAGAAGCTGGAGAAGCAGCTGCCCTTCGAAGTGCCGCAGTTGCCCA
AAACCGGCGAGATGCGCTTCCTGGCCAAGCACTACTACAACGAGGGCGTG
AAGAACACCTTCCGTTTCATCCACATGCTGCCCTGCTACGCAGGCAGGGG
CCTCAAGAAGGTCAAGGACACGTTCCAGGACTTTGCCCAATCCCCAGCCA
TCGCCGGCGGTGCGGAGTCCAGTCCGCCGAAGGCAAGCTTTCTAGACC
BO12882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-PA | 369 | CG7603-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 762 | CG7603-RA | 180..547 | 15..382 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17466198..17466553 | 27..382 | 1780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:14:38 has no hits.
BO12882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:43 Download gff for
BO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-PA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:02 Download gff for
BO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-PA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:30 Download gff for
BO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 180..553 | 15..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:11 Download gff for
BO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 180..553 | 15..389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:11 Download gff for
BO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17466199..17466559 | 28..389 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:30 Download gff for
BO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17459299..17459659 | 28..389 | 99 | | Plus |
BO12882.complete Sequence
400 bp assembled on 2006-10-11
GenBank Submission: FJ632626
> BO12882.complete
GAAGTTATCAGTCGACATGGTTCTAGGATTTCTAGTGCGCGGCGGTCTGG
TGGCCGCAACCGTCTACTACACACAAAAGGTGGGCATCTGGGGAGACTCT
GACCAGACGGACAAGCTGTACAACGACATCAAGTCGGAGCTGCGCCCGCA
TGTCCAGAAGCTGGAGAAGCAGCTGCCCTTCGAAGTGCCGCAGTTGCCCA
AAACCGGCGAGATGCGCTTCCTGGCCAAGCACTACTACAACGAGGGCGTG
AAGAACACCTTCCGTTTCATCCACATGCTGCCCTGCTACGCAGGCAGGGG
CCTCAAGAAGGTCAAGGACACGTTCCAGGACTTTGCCCAATCCCCAGCCA
TCGCCGGCGGTGCGGAGTCCAGTCCGCCGAAGGCAAGCTTTCTAGACCAT
BO12882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 369 | CG7603-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-RA | 762 | CG7603-RA | 180..547 | 15..382 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17466198..17466553 | 27..382 | 1780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:06:47 has no hits.
BO12882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:50 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:30 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 176..549 | 15..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:03 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 182..547 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:50 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 176..549 | 15..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:15 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7603-RA | 182..547 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:15 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17466188..17466553 | 17..384 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:03 Download gff for
BO12882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17459288..17459653 | 17..384 | 98 | | Plus |
BO12882.pep Sequence
Translation from 16 to 400
> BO12882.pep
MVLGFLVRGGLVAATVYYTQKVGIWGDSDQTDKLYNDIKSELRPHVQKLE
KQLPFEVPQLPKTGEMRFLAKHYYNEGVKNTFRFIHMLPCYAGRGLKKVK
DTFQDFAQSPAIAGGAESSPPKASFLDH
BO12882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7603-PA | 122 | CG7603-PA | 1..122 | 1..122 | 647 | 100 | Plus |
| CG15296-PB | 169 | CG15296-PB | 1..104 | 1..108 | 159 | 36.1 | Plus |
| CG15296-PA | 169 | CG15296-PA | 1..104 | 1..108 | 159 | 36.1 | Plus |
| CG43328-PB | 241 | CG43328-PB | 1..109 | 1..109 | 156 | 28.4 | Plus |
| CG43328-PA | 241 | CG43328-PA | 1..109 | 1..109 | 156 | 28.4 | Plus |
