Clone Sequence Records
BO12884.3prime Sequence
899 bp (751 high quality bases) assembled on 2006-05-08
> BO12884.3prime
ATGGTCTAGAAAGCTTGCGACATATATAGACGAGGGCAGGGCCAATCCCA
CCTCGAAGTAATTGCGCTCGTCGACCTTGTAGCGCTTAATGGGGGACTCC
TTGGCGACGATCTCCTTGCGGGTCCTCTTCAGGGCCTTGACTGGAGTCTC
CAGGCAGAAGGTGTTGTCGCAGGGGGCAGACTTGGGGGCCACTGGAGTGG
CCAGTTGGACAAGCAAGTTGTGAGGAATCTTGGCCAGGGGCGATGCCGGT
TCCGGAGTGGGCATCAGGTTGTGCATGGGCAGGGGAACCAGGCCAAAGCT
CAGATCCGAGGCCGGATCGTCTCCAGGTGCGTAGGATGGCGACAGCACCT
CCTGGGGGCAGTTCGACTCCATTTGCTGCTTGACCAAGGTGCGTCTGCGC
AGATTGAAGGTGGACCTTCTCGGCTTCTTCTTGCTGCTGGCGTTCGCCTT
GCAGGCGGAATCCAAGATGGCATCGATTAGGCGATCCAAGGTCTGATCAC
CCATCTGCGTGGAGGCGGGCTGCGGTGTGCTTGGACGCACTTCCACCTTG
GGGGTGGGTGGCTCTGGCACTGCCGTCTCCTGCAACTCCGGCTCCAAGGT
GGCCACAAAGTCCTCGTCCAGTCTACGCTGCTTGAGTTTGTTAACTCCTG
CACCCGAGCCTACAATATAGCGCGGCTGGCCCAGAAAGGGATCCAACGGA
GCCAGGCCCCTCAGCGCCAAGTGCTGACCACTGGGCAGTCCGTTGGGCGA
GTAGTCCTCGGCAAAACGTGGCAATGTGGTGGCGTATCGCACACTCTGTA
CCCTTTGGGGCGCCTGACTGCGCACCACCGCCTCCGGGGTGACATTCCGG
ATATCGCTCAGCGGCGCCAGGACCAGGGGACTGTTGCGCAGCCGGGTAA
BO12884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-PA | 1062 | CG12496-RA | 179..1059 | 899..19 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 284..1164 | 899..19 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2409738..2410618 | 19..899 | 4405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:39:39 has no hits.
BO12884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:46 Download gff for
BO12884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-PA | 181..1062 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:07 Download gff for
BO12884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-PA | 181..1062 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:48 Download gff for
BO12884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 284..1169 | 13..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:14 Download gff for
BO12884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 284..1169 | 13..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:14 Download gff for
BO12884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2409733..2410618 | 13..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:48 Download gff for
BO12884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2303766..2304651 | 13..899 | 99 | | Plus |
BO12884.5prime Sequence
824 bp (790 high quality bases) assembled on 2006-05-08
> BO12884.5prime
GAAGTTATCAGTCGACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGA
ACGAGATTCCCGTGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGG
CTGCAGAGGAGGCAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGA
GAACGTGCCTGACACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCC
GGCTGCGCAACAGTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAAT
GTCACCCCGGAGGCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAG
TGTGCGATACGCCACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCA
ACGGACTGCCCAGTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTG
GATCCCTTTCTGGGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGT
TAACAAACTCAAGCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGG
AGCCGGAGTTGCAGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTG
GAAGTGCGTCCAAGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCA
GACCTTGGATCGCCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGA
ACGCCAGCAGCAAGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGA
CGCACCTTGGTCAAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCT
GTCGCCATCCTACGCACCTGGAGACGATCCGGCCTCGGATCTGAGCTTTG
GCCTGGTTCCCCTGCCCATGCACA
BO12884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-PA | 1062 | CG12496-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 104..913 | 15..824 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2409989..2410798 | 824..15 | 4050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:56:55 has no hits.
BO12884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:48:46 Download gff for
BO12884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:08 Download gff for
BO12884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:19:03 Download gff for
BO12884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 98..912 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:41 Download gff for
BO12884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 98..912 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:41 Download gff for
BO12884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2409990..2410802 | 9..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:19:03 Download gff for
BO12884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2304023..2304835 | 9..823 | 99 | | Minus |
BO12884.complete Sequence
1093 bp assembled on 2006-10-11
GenBank Submission: FJ632627
> BO12884.complete
GAAGTTATCAGTCGACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGA
ACGAGATTCCCGTGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGG
CTGCAGAGGAGGCAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGA
GAACGTGCCTGACACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCC
GGCTGCGCAACAGTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAAT
GTCACCCCGGAGGCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAG
TGTGCGATACGCCACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCA
ACGGACTGCCCAGTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTG
GATCCCTTTCTGGGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGT
TAACAAACTCAAGCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGG
AGCCGGAGTTGCAGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTG
GAAGTGCGTCCAAGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCA
GACCTTGGATCGCCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGA
ACGCCAGCAGCAAGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGA
CGCACCTTGGTCAAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCT
GTCGCCATCCTACGCACCTGGAGACGATCCGGCCTCGGATCTGAGCTTTG
GCCTGGTTCCCCTGCCCATGCACAACCTGATGCCCACTCCGGAACCGGCA
TCGCCCCTGGCCAAGATTCCTCACAACTTGCTTGTCCAACTGGCCACTCC
AGTGGCCCCCAAGTCTGCCCCCTGCGACAACACCTTCTGCCTGGAGACTC
CAGTCAAGGCCCTGAAGAGGACCCGCAAGGAGATCGTCGCCAAGGAGTCC
CCCATTAAGCGCTACAAGGTCGACGAGCGCAATTACTTCGAGGTGGGATT
GGCCCTGCCCTCGTCTATATATGTCGCAAGCTTTCTAGACCAT
BO12884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1062 | CG12496-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 104..1164 | 15..1075 | 5305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2409738..2410798 | 1075..15 | 5305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:42:31 has no hits.
BO12884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:39 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 1..1062 | 17..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:56 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 96..1167 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:27 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 106..1164 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:40 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 96..1167 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:15 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 106..1164 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:15 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2409735..2410796 | 17..1077 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:27 Download gff for
BO12884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2303768..2304829 | 17..1077 | 99 | | Minus |
BO12884.pep Sequence
Translation from 16 to 1093
> BO12884.pep
MLKWTASAQRLNEIPVHDQDANQPQRRRLQRRQRRQRRATIANKENVPDT
VGYTSTPVPITRLRNSPLVLAPLSDIRNVTPEAVVRSQAPQRVQSVRYAT
TLPRFAEDYSPNGLPSGQHLALRGLAPLDPFLGQPRYIVGSGAGVNKLKQ
RRLDEDFVATLEPELQETAVPEPPTPKVEVRPSTPQPASTQMGDQTLDRL
IDAILDSACKANASSKKKPRRSTFNLRRRTLVKQQMESNCPQEVLSPSYA
PGDDPASDLSFGLVPLPMHNLMPTPEPASPLAKIPHNLLVQLATPVAPKS
APCDNTFCLETPVKALKRTRKEIVAKESPIKRYKVDERNYFEVGLALPSS
IYVASFLDH
BO12884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-PA | 353 | CG12496-PA | 1..353 | 1..353 | 1820 | 100 | Plus |
| CG12708-PB | 405 | CG12708-PB | 1..253 | 1..259 | 196 | 29.8 | Plus |
| CG12708-PA | 405 | CG12708-PA | 1..253 | 1..259 | 196 | 29.8 | Plus |
| CG15646-PB | 410 | CG15646-PB | 52..272 | 29..259 | 178 | 29.8 | Plus |
| CG15646-PA | 410 | CG15646-PA | 52..272 | 29..259 | 178 | 29.8 | Plus |
