Clone Sequence Records
BO12888.3prime Sequence
537 bp (536 high quality bases) assembled on 2006-05-08
> BO12888.3prime
ATGGTCTAGAAAGCTTGGCCGAGCACTCCTCCTGACTTTTTCTGACGCAG
CGAGCAACTTTGCGTTTAAAGTCGGTATAGGATTCTCGCCATTCCTTGGC
AGCATCTACGTTTGCTGGAGACTCATCGTTCGGATCGGCCAGCATTGATA
TTACAGATATCAAGATAGTCTCCACTGTATGCACGGGTAACCAGCGCTCC
GATGCTTTTTCGTAGCCCCATTTATCGTCTCCAGGCTCATGTAAAATAGA
AATACAGACATCTCCATTCTTCTCAATATTTGGGTGCCAAATTTCTGTAA
CAAACTTCATTCGAGGAGGACGCAACGGATATTCTTTAGGAAAGTAAAGA
TGAGCTTTAAAGAATCCTCCTTCGTACAGTGTATCTGGCGGTCCAATTAT
TAAAACTTCCCAGCGAAATATATCATTCTCATCAATTAAACCAGCGGAGA
ATCCTTCCACTGGATTCTTGTTTAGTTCTGCCAATTGTTTTTTTAACAGT
AAAGATGACTGAAGTTCAGACATGTCGACTGATAACT
BO12888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-PA | 507 | CG40045-RA | 1..504 | 523..20 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 523..20 | 2520 | 100 | Minus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 523..20 | 2465 | 99.4 | Minus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 479..20 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 374..20 | 1775 | 100 | Minus |
3L | 28110227 | 3L | 24030752..24030857 | 480..375 | 530 | 100 | Minus |
3R | 32079331 | 3R | 13717609..13717904 | 93..388 | 310 | 73.6 | Plus |
3L | 28110227 | 3L | 24028678..24028723 | 523..478 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:35:26 has no hits.
BO12888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:02 Download gff for
BO12888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-PA | 1..507 | 18..523 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:01:54 Download gff for
BO12888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 13..526 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:09 Download gff for
BO12888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 13..526 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:09 Download gff for
BO12888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24035432..24035792 | 13..374 | 99 | | Minus |
3L | 24028676..24028723 | 478..526 | 97 | -> | Minus |
3L | 24030755..24030857 | 375..477 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:01:54 Download gff for
BO12888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021776..24021823 | 478..526 | 97 | -> | Minus |
arm_3L | 24023855..24023957 | 375..477 | 100 | -> | Minus |
arm_3L | 24028532..24028892 | 13..374 | 99 | | Minus |
BO12888.5prime Sequence
537 bp (536 high quality bases) assembled on 2006-05-08
> BO12888.5prime
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGGCCAAGCTTTCTAGACC
BO12888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-PA | 507 | CG40045-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 17..520 | 2520 | 100 | Plus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 17..520 | 2465 | 99.4 | Plus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 61..520 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 166..520 | 1775 | 100 | Plus |
3L | 28110227 | 3L | 24030752..24030857 | 60..165 | 530 | 100 | Plus |
3R | 32079331 | 3R | 13717609..13717904 | 447..152 | 310 | 73.6 | Minus |
3L | 28110227 | 3L | 24028678..24028723 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:08:49 has no hits.
BO12888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:03 Download gff for
BO12888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-PA | 1..507 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:08 Download gff for
BO12888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 14..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:46 Download gff for
BO12888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 14..527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:46 Download gff for
BO12888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24028676..24028723 | 14..62 | 97 | -> | Plus |
3L | 24030755..24030857 | 63..165 | 100 | -> | Plus |
3L | 24035432..24035792 | 166..527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:08 Download gff for
BO12888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021776..24021823 | 14..62 | 97 | -> | Plus |
arm_3L | 24023855..24023957 | 63..165 | 100 | -> | Plus |
arm_3L | 24028532..24028892 | 166..527 | 99 | | Plus |
BO12888.complete Sequence
539 bp assembled on 2011-06-28
> BO12888.complete
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGGCCAAGCTTTCTAGACCAT
BO12888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 507 | CG40045-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG40045-RD | 504 | CG40045-PD | 1..501 | 17..520 | 2440 | 99.4 | Plus |
CG40045-RC | 399 | CG40045-PC | 42..396 | 166..520 | 1775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 17..520 | 2520 | 100 | Plus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 17..520 | 2440 | 99.4 | Plus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 61..520 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 166..520 | 1775 | 100 | Plus |
3L | 28110227 | 3L | 24030752..24030857 | 60..165 | 530 | 100 | Plus |
3R | 32079331 | 3R | 13717609..13717904 | 447..152 | 310 | 73.6 | Minus |
3L | 28110227 | 3L | 24028678..24028723 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:16:39 has no hits.
BO12888.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:27 Download gff for
BO12888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 164..667 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:41 Download gff for
BO12888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 164..667 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:21 Download gff for
BO12888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 164..667 | 17..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:21 Download gff for
BO12888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24028678..24028723 | 17..62 | 100 | -> | Plus |
3L | 24030755..24030857 | 63..165 | 100 | -> | Plus |
3L | 24035432..24035786 | 166..523 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:41 Download gff for
BO12888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021778..24021823 | 17..62 | 100 | -> | Plus |
arm_3L | 24023855..24023957 | 63..165 | 100 | -> | Plus |
arm_3L | 24028532..24028886 | 166..523 | 99 | | Plus |
BO12888.pep Sequence
Translation from 16 to 538
> BO12888.pep
MSELQSSLLLKKQLAELNKNPVEGFSAGLIDENDIFRWEVLIIGPPDTLY
EGGFFKAHLYFPKEYPLRPPRMKFVTEIWHPNIEKNGDVCISILHEPGDD
KWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRESYT
DFKRKVARCVRKSQEECSAKLSRP
BO12888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-PA | 168 | CG40045-PA | 1..168 | 1..168 | 903 | 100 | Plus |
CG40045-PD | 167 | CG40045-PD | 1..167 | 1..168 | 884 | 99.4 | Plus |
Ubc87F-PA | 168 | CG9602-PA | 1..166 | 1..166 | 772 | 83.1 | Plus |
CG40045-PC | 132 | CG40045-PC | 15..132 | 51..168 | 649 | 100 | Plus |
CG40045-PB | 97 | CG40045-PB | 1..97 | 72..168 | 527 | 100 | Plus |