Clone BO12888 Report

Search the DGRC for BO12888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG40045-RA
Protein status:BO12888.pep: Imported from assembly
Sequenced Size:539

Clone Sequence Records

BO12888.3prime Sequence

537 bp (536 high quality bases) assembled on 2006-05-08

> BO12888.3prime
ATGGTCTAGAAAGCTTGGCCGAGCACTCCTCCTGACTTTTTCTGACGCAG
CGAGCAACTTTGCGTTTAAAGTCGGTATAGGATTCTCGCCATTCCTTGGC
AGCATCTACGTTTGCTGGAGACTCATCGTTCGGATCGGCCAGCATTGATA
TTACAGATATCAAGATAGTCTCCACTGTATGCACGGGTAACCAGCGCTCC
GATGCTTTTTCGTAGCCCCATTTATCGTCTCCAGGCTCATGTAAAATAGA
AATACAGACATCTCCATTCTTCTCAATATTTGGGTGCCAAATTTCTGTAA
CAAACTTCATTCGAGGAGGACGCAACGGATATTCTTTAGGAAAGTAAAGA
TGAGCTTTAAAGAATCCTCCTTCGTACAGTGTATCTGGCGGTCCAATTAT
TAAAACTTCCCAGCGAAATATATCATTCTCATCAATTAAACCAGCGGAGA
ATCCTTCCACTGGATTCTTGTTTAGTTCTGCCAATTGTTTTTTTAACAGT
AAAGATGACTGAAGTTCAGACATGTCGACTGATAACT

BO12888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-PA 507 CG40045-RA 1..504 523..20 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-RA 740 CG40045-RA 164..667 523..20 2520 100 Minus
CG40045-RD 737 CG40045-RD 164..664 523..20 2465 99.4 Minus
CG40045-RB 868 CG40045-RB 336..795 479..20 2300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24035432..24035786 374..20 1775 100 Minus
3L 28110227 3L 24030752..24030857 480..375 530 100 Minus
3R 32079331 3R 13717609..13717904 93..388 310 73.6 Plus
3L 28110227 3L 24028678..24028723 523..478 230 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:35:26 has no hits.

BO12888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:02 Download gff for BO12888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40045-PA 1..507 18..523 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:01:54 Download gff for BO12888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 162..673 13..526 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:09 Download gff for BO12888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 162..673 13..526 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:09 Download gff for BO12888.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 24035432..24035792 13..374 99   Minus
3L 24028676..24028723 478..526 97 -> Minus
3L 24030755..24030857 375..477 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:01:54 Download gff for BO12888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 24021776..24021823 478..526 97 -> Minus
arm_3L 24023855..24023957 375..477 100 -> Minus
arm_3L 24028532..24028892 13..374 99   Minus

BO12888.5prime Sequence

537 bp (536 high quality bases) assembled on 2006-05-08

> BO12888.5prime
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGGCCAAGCTTTCTAGACC

BO12888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-PA 507 CG40045-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-RA 740 CG40045-RA 164..667 17..520 2520 100 Plus
CG40045-RD 737 CG40045-RD 164..664 17..520 2465 99.4 Plus
CG40045-RB 868 CG40045-RB 336..795 61..520 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24035432..24035786 166..520 1775 100 Plus
3L 28110227 3L 24030752..24030857 60..165 530 100 Plus
3R 32079331 3R 13717609..13717904 447..152 310 73.6 Minus
3L 28110227 3L 24028678..24028723 17..62 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:08:49 has no hits.

BO12888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:03 Download gff for BO12888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40045-PA 1..507 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:08 Download gff for BO12888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 162..673 14..527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:46 Download gff for BO12888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 162..673 14..527 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:46 Download gff for BO12888.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 24028676..24028723 14..62 97 -> Plus
3L 24030755..24030857 63..165 100 -> Plus
3L 24035432..24035792 166..527 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:08 Download gff for BO12888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 24021776..24021823 14..62 97 -> Plus
arm_3L 24023855..24023957 63..165 100 -> Plus
arm_3L 24028532..24028892 166..527 99   Plus

BO12888.complete Sequence

539 bp assembled on 2011-06-28

> BO12888.complete
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGGCCAAGCTTTCTAGACCAT

BO12888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-RA 507 CG40045-PA 1..504 17..520 2520 100 Plus
CG40045-RD 504 CG40045-PD 1..501 17..520 2440 99.4 Plus
CG40045-RC 399 CG40045-PC 42..396 166..520 1775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-RA 740 CG40045-RA 164..667 17..520 2520 100 Plus
CG40045-RD 737 CG40045-RD 164..664 17..520 2440 99.4 Plus
CG40045-RB 868 CG40045-RB 336..795 61..520 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24035432..24035786 166..520 1775 100 Plus
3L 28110227 3L 24030752..24030857 60..165 530 100 Plus
3R 32079331 3R 13717609..13717904 447..152 310 73.6 Minus
3L 28110227 3L 24028678..24028723 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:16:39 has no hits.

BO12888.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:27 Download gff for BO12888.complete
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 164..667 17..523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:41 Download gff for BO12888.complete
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 164..667 17..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:21 Download gff for BO12888.complete
Subject Subject Range Query Range Percent Splice Strand
CG40045-RA 164..667 17..523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:21 Download gff for BO12888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24028678..24028723 17..62 100 -> Plus
3L 24030755..24030857 63..165 100 -> Plus
3L 24035432..24035786 166..523 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:41 Download gff for BO12888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 24021778..24021823 17..62 100 -> Plus
arm_3L 24023855..24023957 63..165 100 -> Plus
arm_3L 24028532..24028886 166..523 99   Plus

BO12888.pep Sequence

Translation from 16 to 538

> BO12888.pep
MSELQSSLLLKKQLAELNKNPVEGFSAGLIDENDIFRWEVLIIGPPDTLY
EGGFFKAHLYFPKEYPLRPPRMKFVTEIWHPNIEKNGDVCISILHEPGDD
KWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRESYT
DFKRKVARCVRKSQEECSAKLSRP

BO12888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG40045-PA 168 CG40045-PA 1..168 1..168 903 100 Plus
CG40045-PD 167 CG40045-PD 1..167 1..168 884 99.4 Plus
Ubc87F-PA 168 CG9602-PA 1..166 1..166 772 83.1 Plus
CG40045-PC 132 CG40045-PC 15..132 51..168 649 100 Plus
CG40045-PB 97 CG40045-PB 1..97 72..168 527 100 Plus