Clone BO12892 Report

Search the DGRC for BO12892

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG5630-RA
Protein status:BO12892.pep: Imported from assembly
Sequenced Size:1166

Clone Sequence Records

BO12892.3prime Sequence

775 bp (739 high quality bases) assembled on 2006-05-08

> BO12892.3prime
ATGGTCTAGGAAAGCTTGCTTGGTTTTGGAAGGCGTCCAGGACCTTGGTG
AGCGCACCTTGCTTCACGCCCTCATCGGCACACGGATTGATGTCCCAGAA
GGCTCCATGGCATCCGAACTCCTCGAAGCAGTTGTACCGCACCTTCTTGC
TCTCGCCCGTGCAGCAGTTGACGATCGCCCACACACACCTGCTGACCTTG
GGCTCACTATCGACCCCCCCTGTTTGTGGGACAGGCCTTGCGTTGGGCCG
CATGGTGGGCAGTCCCACAACGGGGGAGCGGGTGGGGGGCGGCCGGCGTA
TGCTGTTCGACGGACGCCACGATGGTGCCGAGGTCACAAAGTCACTATCA
TTGATTTGAAAGATTGGCCTGGCAGTAGTCGTAGACGAACGGTTGTAGAT
CGAGAAATCCGCATCCGCTTGATTTGAATTGTGTATTAAATCGAATTCTC
CTCTAGAATCGACCGAGTCTGGCGTTGGGATATTCTCTTGGCCCTGATTC
CTACGATTCGGAGGCCCCACCAGATGGGGTTTCTTACCCTTCACTGAAAT
GCGAAAATGCGTATAAGTTAAGGGAGACACAAATTTTATTTCCGGAGTGC
CATAGTAGTATTGCAGGACTTTCTCAAAGCTTACAGGAGCCTGTCGTCGC
TGGCGACTGTGGTACTTCTTGGGATGCTTAGCCAGCCACTCTTCCTTGAT
GGGGTCCGCCCGTTGGGCAGCCCCAACTTTGCTGTGTGGGAGAGCCTTGA
GGTCCTCTTTCAGGACGATCGGCTT

BO12892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5630-PA 1134 CG5630-RA 376..1131 775..20 3705 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 2132 CG5630-RC 511..1266 775..20 3735 99.6 Minus
hdly-RA 1386 CG5630-RA 511..1266 775..20 3735 99.6 Minus
hdly-RB 1685 CG5630-RB 511..1228 775..58 3545 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20927187..20927504 337..20 1590 100 Minus
3R 32079331 3R 20926757..20926977 557..337 1105 100 Minus
3R 32079331 3R 20926473..20926690 775..558 1045 98.6 Minus
Blast to na_te.dros performed on 2015-02-02 20:37:23 has no hits.

BO12892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:00 Download gff for BO12892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-PA 376..1134 17..775 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:25 Download gff for BO12892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-PA 376..1134 17..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:34 Download gff for BO12892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 511..1274 11..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:57 Download gff for BO12892.3prime
Subject Subject Range Query Range Percent Splice Strand
hdly-RA 511..1274 11..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:57 Download gff for BO12892.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20926473..20926690 558..775 98 -> Minus
3R 20926757..20926977 337..557 100 -> Minus
3R 20927188..20927512 11..336 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:34 Download gff for BO12892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16752479..16752699 337..557 100 -> Minus
arm_3R 16752195..16752412 558..775 98 -> Minus
arm_3R 16752910..16753234 11..336 98   Minus

BO12892.5prime Sequence

894 bp (755 high quality bases) assembled on 2006-05-08

> BO12892.5prime
GAAGTTATCAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCA
GCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCC
AGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCAT
TCCGCCGGATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACG
GTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTC
AGCGAGGATTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAA
GAAGCATAAGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAG
AAAAGAAGGAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATC
GTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGC
CCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGA
AGTACCACAGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTC
CTGCAATACTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAAC
TTATACGCATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGG
GGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGAC
TCGGTCGATTCTAGAGGAGAATTCGATTTAATACACAATTCAAATCAAGC
GGATGCGGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGC
CACTCTTTCAAATCAATGATAGTGACTTTGTGACCTCGGCACCATCGTGG
CGTCCGTCCAACAGCATACGCCGGCCGCCCCCCACCCGCTCCCC

BO12892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5630-PA 1134 CG5630-RA 1..878 17..894 4340 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 2132 CG5630-RC 136..1013 17..894 4360 99.8 Plus
hdly-RB 1685 CG5630-RB 136..1013 17..894 4360 99.8 Plus
hdly-RA 1386 CG5630-RA 136..1013 17..894 4360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20926344..20926690 263..609 1735 100 Plus
3R 32079331 3R 20926757..20926977 610..830 1090 99.5 Plus
3R 32079331 3R 20925944..20926102 17..175 795 100 Plus
3R 32079331 3R 20926163..20926252 174..263 450 100 Plus
3R 32079331 3R 20927187..20927251 830..894 310 98.5 Plus
Blast to na_te.dros performed on 2015-02-10 20:33:15 has no hits.

BO12892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:01 Download gff for BO12892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:26 Download gff for BO12892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:06 Download gff for BO12892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 131..1013 10..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:50:14 Download gff for BO12892.5prime
Subject Subject Range Query Range Percent Splice Strand
hdly-RA 131..1013 10..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:14 Download gff for BO12892.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20925939..20926102 10..175 98 -> Plus
3R 20926165..20926252 176..263 100 -> Plus
3R 20926345..20926690 264..609 100 -> Plus
3R 20926757..20926977 610..830 99 -> Plus
3R 20927188..20927251 831..894 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:06 Download gff for BO12892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16751661..16751824 10..175 98 -> Plus
arm_3R 16751887..16751974 176..263 100 -> Plus
arm_3R 16752067..16752412 264..609 100 -> Plus
arm_3R 16752479..16752699 610..830 99 -> Plus
arm_3R 16752910..16752973 831..894 98   Plus

BO12892.complete Sequence

1166 bp assembled on 2008-08-15

> BO12892.complete
GAAGTTATCAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCA
GCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCC
AGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCAT
TCCGCCGGATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACG
GTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTC
AGCGAGGATTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAA
GAAGCATAAGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAG
AAAAGAAGGAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATC
GTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGC
CCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGA
AGTACCACAGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTC
CTGCAATACTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAAC
TTATACGCATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGG
GGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGAC
TCGGTCGATTCTAGAGGAGAATTCGATTTAATACACAATTCAAATCAAGC
GGATGCGGATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGC
CAATCTTTCAAATCAATGATAGTGACTTTGTGACCTCGGCACCATCGTGG
CGTCCGTCGAACAGCATACGCCGGCCGCCCCCCACCCGCTCCCCCGTTGT
GGGACTGCCCACCATGCGGCCCAACGCAAGGCCTGTCCCACAAACAGGGG
GGGTCGATAGTGAGCCCAAGGTCAGCAGGTGTGTGTGGGCGATCGTCAAC
TGCTGCACGGGCGAGAGCAAGAAGGTGCGGTACAACTGCTTCGAGGAGTT
CGGATGCCATGGAGCCTTCTGGGACATCAATCCGTGTGCCGATGAGGGCG
TGAAGCAAGGTGCGCTCACCAAGGTCCTGGACGCCTTCCAAAACCAAGCA
AGCTTTCCTAGACCAT

BO12892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 1134 CG5630-PC 1..1131 17..1147 5655 100 Plus
hdly-RA 1134 CG5630-PA 1..1131 17..1147 5655 100 Plus
hdly-RB 1338 CG5630-PB 1..1093 17..1109 5465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-RC 2132 CG5630-RC 136..1266 17..1147 5655 100 Plus
hdly-RA 1386 CG5630-RA 136..1266 17..1147 5655 100 Plus
hdly-RB 1685 CG5630-RB 136..1228 17..1109 5465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20926344..20926690 263..609 1735 100 Plus
3R 32079331 3R 20927187..20927504 830..1147 1590 100 Plus
3R 32079331 3R 20926757..20926977 610..830 1105 100 Plus
3R 32079331 3R 20925944..20926102 17..175 795 100 Plus
3R 32079331 3R 20926163..20926252 174..263 450 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:44:20 has no hits.

BO12892.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:24 Download gff for BO12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 126..1269 10..1156 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:34 Download gff for BO12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 136..1266 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:45 Download gff for BO12892.complete
Subject Subject Range Query Range Percent Splice Strand
CG5630-RA 131..1261 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:20 Download gff for BO12892.complete
Subject Subject Range Query Range Percent Splice Strand
hdly-RA 136..1266 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:20 Download gff for BO12892.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20926345..20926690 264..609 100 -> Plus
3R 20926757..20926977 610..830 100 -> Plus
3R 20927188..20927504 831..1149 99   Plus
3R 20925944..20926102 17..175 100 -> Plus
3R 20926165..20926252 176..263 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:34 Download gff for BO12892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16751666..16751824 17..175 100 -> Plus
arm_3R 16751887..16751974 176..263 100 -> Plus
arm_3R 16752067..16752412 264..609 100 -> Plus
arm_3R 16752479..16752699 610..830 100 -> Plus
arm_3R 16752910..16753226 831..1149 99   Plus

BO12892.pep Sequence

Translation from 16 to 1165

> BO12892.pep
MNRTSLSSGSTSRRLPALLFVLLLCLVARTNGRPSQEDESDLAIIPPDAD
NVEIHKVKIVNGVMQEDHPVIMYKEDFVSEDYDPTKSETNPSHHKKHKRT
RLHHAKQVTGTEKKEDQILFDILPDKPIVLEEDLKALPHSKVGAAQLAEP
IKEEWLAKHPKKYHSRQRRQAPVSFEKVLQYYYGTPEIKFVSPLTYTHFR
ISVKGKKPHLVGPPNRRNQGQENIPTPDSVDSRGEFDLIHNSNQADADFS
IYNRSSTTTARPIFQINDSDFVTSAPSWRPSNSIRRPPPTRSPVVGLPTM
RPNARPVPQTGGVDSEPKVSRCVWAIVNCCTGESKKVRYNCFEEFGCHGA
FWDINPCADEGVKQGALTKVLDAFQNQASFPRP

BO12892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
hdly-PC 377 CG5630-PC 1..377 1..377 2014 100 Plus
hdly-PA 377 CG5630-PA 1..377 1..377 2014 100 Plus
hdly-PB 445 CG5630-PB 1..371 1..371 1954 98.4 Plus