Clone BO12893 Report

Search the DGRC for BO12893

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptClC-b-RA
Protein status:BO12893.pep:
Sequenced Size:2473

Clone Sequence Records

BO12893.3prime Sequence

845 bp (784 high quality bases) assembled on 2006-05-08

> BO12893.3prime
ATGGTCTAGAAAGCTTGCCTTGTAAATAAAATCCCTTCTCGTTATAATGC
CAGCAATGCGATTCTCATGGTTGATGACCAGCAAATGACGCAACCCCAAT
GCGCGGAATATCTGAAAAATTCTAGGCACCGAATCGTGCGGATTGACTCG
AATAGGTGATGGATTCATAAACATGGACAAGTCCACAGTGTAATTGATTT
TCTCATCTAGCTTGCGAACACTCTTGATTGATGGAAAACGGGGATAGAGG
TCCCTGAATGTCTGAATTGAAGTTTCTGGCAGCCAGAATCGTTTGTTCTC
CACATACAGGGATTTGAGCAAAATAACAATCAGTTGCGAGCGCAAGATGA
TGCCACAAACGCGACCCTCCGATCGACGATCTCCGCAAACATCATCGACC
ACCGGAAATCCGTTGTGGTCGCACTTCTTGAGCATCTCATATATGTAATT
AGCGGAATCGCGGATCTTGATACAGATCACTGGTTTGCTTAGAATTTCGC
GAGCTTTCAGACCCTTGTATTGCGGCAATGGCTCCCAGGTCAGCATGGGC
ACATGATTTACTTGGATCTGCGTATCGTAGATGCCCTCGTTGAAGTAGTC
ACCGACCCACTTGGCGCTGATAAGTGCAATGATAAGGGGAAAGAAGAAGG
ACGTCTCCACGCCAGTGGTTTCCATCAATATAACTGACAAGCTAATGGTC
ATTCGAAGCACTCCACCCAAGTTAGCTGCAGCTCCAATTAGGGCATATTT
ACCCGGATGCAGGAACTCCGCCTGTGGGAATACATAGTAGGTAAGCATGG
CTAAAAGACGACCCCATGCTGCGCCGACCAGAGCAGTTGGGATGA

BO12893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8594-PA 2442 CG8594-RA 1613..2439 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2647 CG8594-RA 1683..2509 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12574233..12574621 769..381 1945 100 Minus
2R 25286936 2R 12574679..12574837 381..223 795 100 Minus
2R 25286936 2R 12575041..12575161 139..19 605 100 Minus
2R 25286936 2R 12574892..12574977 224..139 430 100 Minus
2R 25286936 2R 12574106..12574183 845..768 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:41:17 has no hits.

BO12893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:02 Download gff for BO12893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8594-PA 1614..2442 15..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:28 Download gff for BO12893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8594-PA 1614..2442 15..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:42 Download gff for BO12893.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 1684..2516 10..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:07 Download gff for BO12893.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 1684..2516 10..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:07 Download gff for BO12893.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12574679..12574837 223..381 100 -> Minus
2R 12574894..12574977 139..222 100 -> Minus
2R 12575042..12575168 10..138 97   Minus
2R 12574107..12574182 769..844 100 -> Minus
2R 12574234..12574620 382..768 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:42 Download gff for BO12893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8461612..8461687 769..844 100 -> Minus
arm_2R 8461739..8462125 382..768 100 -> Minus
arm_2R 8462184..8462342 223..381 100 -> Minus
arm_2R 8462399..8462482 139..222 100 -> Minus
arm_2R 8462547..8462673 10..138 97   Minus

BO12893.5prime Sequence

877 bp (760 high quality bases) assembled on 2006-05-08

> BO12893.5prime
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAAGAGGGTCCATGATACATG
CTGGAGCTGTCGTCGCCGCCGGAATTT

BO12893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8594-PA 2442 CG8594-RA 1..825 17..841 4100 99.8 Plus
CG8594-PA 2442 CG8594-RA 826..862 841..877 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2647 CG8594-RA 71..932 17..877 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12572982..12573296 564..877 1510 99.4 Plus
2R 25286936 2R 12572138..12572377 17..256 1200 100 Plus
2R 25286936 2R 12572688..12572891 360..563 1020 100 Plus
2R 25286936 2R 12572501..12572605 257..361 525 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:54:50 has no hits.

BO12893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:03 Download gff for BO12893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8594-PA 1..862 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:29 Download gff for BO12893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8594-PA 1..862 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:41 Download gff for BO12893.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..932 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:34 Download gff for BO12893.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..932 17..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:34 Download gff for BO12893.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12572138..12572377 17..256 100 -> Plus
2R 12572501..12572605 257..361 100 -> Plus
2R 12572690..12572891 362..563 100 -> Plus
2R 12572982..12573296 564..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:41 Download gff for BO12893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8459643..8459882 17..256 100 -> Plus
arm_2R 8460006..8460110 257..361 100 -> Plus
arm_2R 8460195..8460396 362..563 100 -> Plus
arm_2R 8460487..8460801 564..877 99   Plus

BO12893.complete Sequence

2473 bp assembled on 2008-01-17

GenBank Submission: FJ632628

> BO12893.complete
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAGGAGGGTCCAATGATACAT
GCTGGAGCTGTCGTCGCCGCCGGAATTTCGCAGGGCAAAAGCACCACGTT
TTTGAAAGATTTCCGCATATTCAAGGCTTTTCGGGATGATCACGAGAAAA
GAGATTTCGTTCTTGGAGGCGGAGCCGCGGGAGTTTCAGCTGCTTTTGGA
GCTCCAATTGGAGGCATGCTTTTTTCTCTGGAGGAAGCGGCTAGTTTCTG
GAACCAGAATCTCATTTGGCGCACCTTAGTGGCCTCCATTATCAGCGTAT
TCACCTTGAATATCGTTTTATCAGCTTACCATGGCCTAAACGATTTCACG
TTCACGGGTCTCTTCAACTTGGGCAAGTTTGATACGCCTTTGAAATTCGA
CTACTTTGAGCTGCCCATCTTCATGATTCTGGGAGTAACTGGTGGATTAC
TCGGAGCCGCCTGGAACTCTCTTAATACCAAAATCAATAAATTTCGGAAG
CGCTTTATTCCGTGGAAAATCGGAAAGGTTCTCGAAGCTGTTGTAGTGGC
AATGATGGGCGTAACTTTGGCTTGTCTAATGATTTACTTTATCAACGATT
GTCGTCCACTGGGCAACGATCCGACCAACAATCCTGTACAGCTTTTCTGC
GAGGACAACGAATATAATGCCGTGGCTGCCTTGTGGTTTCAAACGCCAGA
GGCTACAGTCAGATCCTTGTTCCACGATCCTCCAGGATCCCATAAGATTC
TGACGCTAGCCCTTTTCACAGTTGTTTACTATGTGCTGTCCTGTGCTACG
TTTGGTCTCAATGTGTCCTTGGGTGTCTTCATCCCAACTGCTCTGGTCGG
CGCAGCATGGGGTCGTCTTTTAGCCATGCTTACCTACTATGTATTCCCAC
AGGCGGAGTTCCTGCATCCGGGTAAATATGCCCTAATTGGAGCTGCAGCT
AACTTGGGTGGAGTGCTTCGAATGACCATTAGCTTGTCAGTTATATTGAT
GGAAACCACTGGCGTGGAGACGTCCTTCTTCTTTCCCCTTATCATTGCAC
TTATCAGCGCCAAGTGGGTCGGTGACTACTTCAACGAGGGCATCTACGAT
ACGCAGATCCAAGTAAATCATGTGCCCATGCTGACCTGGGAGCCATTGCC
GCAATACAAGGGTCTGAAAGCTCGCGAAATTCTAAGCAAACCAGTGATCT
GTATCAAGATCCGCGATTCCGCTAATTACATATATGAGATGCTCAAGAAG
TGCGACCACAACGGATTTCCGGTGGTCGATGATGTTTGCGGAGATCGTCG
ATCGGAGGGTCGCGTTTGTGGCATCATCTTGCGCTCGCAACTGATTGTTA
TTTTGCTCAAATCCCTGTATGTGGAGAACAAACGATTCTGGCTGCCAGAA
ACTTCAATTCAGACATTCAGGGACCTCTATCCCCGTTTTCCATCAATCAA
GAGTGTTCGCAAGCTAGATGAGAAAATCAATTACACTGTGGACTTGTCCA
TGTTTATGAATCCATCACCTATTCGAGTCAATCCGCACGATTCGGTGCCT
AGAATTTTTCAGATATTCCGCGCATTGGGGTTGCGTCATTTGCTGGTCAT
CAACCATGAGAATCGCATTGCTGGCATTATAACGAGAAGGGATTTTATTT
ACAAGGCAAGCTTTCTAGACCAT

BO12893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2442 CG8594-PA 1..2439 17..2455 12195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-RA 2647 CG8594-RA 71..2509 17..2455 12195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12572982..12573954 564..1536 4865 100 Plus
2R 25286936 2R 12574233..12574621 1705..2093 1945 100 Plus
2R 25286936 2R 12572138..12572377 17..256 1200 100 Plus
2R 25286936 2R 12572688..12572891 360..563 1020 100 Plus
2R 25286936 2R 12574011..12574183 1534..1706 865 100 Plus
2R 25286936 2R 12574679..12574837 2093..2251 795 100 Plus
2R 25286936 2R 12575041..12575161 2335..2455 605 100 Plus
2R 25286936 2R 12572501..12572605 257..361 525 100 Plus
2R 25286936 2R 12574892..12574977 2250..2335 430 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:41:22 has no hits.

BO12893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:10 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8594-RA 1..2442 17..2459 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:38 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8594-RA 27..2465 17..2457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:30 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..2509 17..2457 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:10 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
CG8594-RA 27..2472 17..2464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:18 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-b-RA 71..2509 17..2457 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:18 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12572138..12572377 17..256 100 -> Plus
2R 12572501..12572605 257..361 100 -> Plus
2R 12572982..12573953 564..1535 100 -> Plus
2R 12574013..12574182 1536..1705 100 -> Plus
2R 12574234..12574620 1706..2092 100 -> Plus
2R 12574679..12574837 2093..2251 100 -> Plus
2R 12574894..12574977 2252..2335 100 -> Plus
2R 12575042..12575161 2336..2457 98   Plus
2R 12572690..12572891 362..563 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:30 Download gff for BO12893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8460006..8460110 257..361 100 -> Plus
arm_2R 8459643..8459882 17..256 100 -> Plus
arm_2R 8460195..8460396 362..563 100 -> Plus
arm_2R 8460487..8461458 564..1535 100 -> Plus
arm_2R 8461518..8461687 1536..1705 100 -> Plus
arm_2R 8461739..8462125 1706..2092 100 -> Plus
arm_2R 8462184..8462342 2093..2251 100 -> Plus
arm_2R 8462399..8462482 2252..2335 100 -> Plus
arm_2R 8462547..8462666 2336..2457 98   Plus

BO12893.pep Sequence

Translation from 16 to 2473

> BO12893.pep
MDDRKALITLDGESSAEDDPIILQKEAGPTSKAVQDFGLHQREEPSTSAL
ARRATLSGNNHLLDDSQPLLMGNNSVPPDIPINGSAGSPNRNINSSEPIF
HLRSRTAAASTPNYESLDYEVCENTLFQDEQRKRLTERFSLRKDIIRWII
FIQIGIITALIACTIDIIIEELSIRKYTFLYNSVKENVPLSDASDRDLLI
PYLYWLLFSIVPVAFGAAMVTYIEPITAGSGIPQVKSYLNGVKIPRIVRI
KTLAVKAIGVITSVVGGLAGGKEGPMIHAGAVVAAGISQGKSTTFLKDFR
IFKAFRDDHEKRDFVLGGGAAGVSAAFGAPIGGMLFSLEEAASFWNQNLI
WRTLVASIISVFTLNIVLSAYHGLNDFTFTGLFNLGKFDTPLKFDYFELP
IFMILGVTGGLLGAAWNSLNTKINKFRKRFIPWKIGKVLEAVVVAMMGVT
LACLMIYFINDCRPLGNDPTNNPVQLFCEDNEYNAVAALWFQTPEATVRS
LFHDPPGSHKILTLALFTVVYYVLSCATFGLNVSLGVFIPTALVGAAWGR
LLAMLTYYVFPQAEFLHPGKYALIGAAANLGGVLRMTISLSVILMETTGV
ETSFFFPLIIALISAKWVGDYFNEGIYDTQIQVNHVPMLTWEPLPQYKGL
KAREILSKPVICIKIRDSANYIYEMLKKCDHNGFPVVDDVCGDRRSEGRV
CGIILRSQLIVILLKSLYVENKRFWLPETSIQTFRDLYPRFPSIKSVRKL
DEKINYTVDLSMFMNPSPIRVNPHDSVPRIFQIFRALGLRHLLVINHENR
IAGIITRRDFIYKASFLDH

BO12893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-b-PA 813 CG8594-PA 1..813 1..813 4201 100 Plus
ClC-c-PB 822 CG5284-PB 103..813 128..819 604 27.6 Plus
ClC-c-PD 893 CG5284-PD 174..884 128..819 604 27.6 Plus
ClC-c-PC 893 CG5284-PC 174..884 128..819 604 27.6 Plus
ClC-a-PG 1018 CG31116-PG 124..606 148..650 409 27.4 Plus