Clone Sequence Records
BO12893.3prime Sequence
845 bp (784 high quality bases) assembled on 2006-05-08
> BO12893.3prime
ATGGTCTAGAAAGCTTGCCTTGTAAATAAAATCCCTTCTCGTTATAATGC
CAGCAATGCGATTCTCATGGTTGATGACCAGCAAATGACGCAACCCCAAT
GCGCGGAATATCTGAAAAATTCTAGGCACCGAATCGTGCGGATTGACTCG
AATAGGTGATGGATTCATAAACATGGACAAGTCCACAGTGTAATTGATTT
TCTCATCTAGCTTGCGAACACTCTTGATTGATGGAAAACGGGGATAGAGG
TCCCTGAATGTCTGAATTGAAGTTTCTGGCAGCCAGAATCGTTTGTTCTC
CACATACAGGGATTTGAGCAAAATAACAATCAGTTGCGAGCGCAAGATGA
TGCCACAAACGCGACCCTCCGATCGACGATCTCCGCAAACATCATCGACC
ACCGGAAATCCGTTGTGGTCGCACTTCTTGAGCATCTCATATATGTAATT
AGCGGAATCGCGGATCTTGATACAGATCACTGGTTTGCTTAGAATTTCGC
GAGCTTTCAGACCCTTGTATTGCGGCAATGGCTCCCAGGTCAGCATGGGC
ACATGATTTACTTGGATCTGCGTATCGTAGATGCCCTCGTTGAAGTAGTC
ACCGACCCACTTGGCGCTGATAAGTGCAATGATAAGGGGAAAGAAGAAGG
ACGTCTCCACGCCAGTGGTTTCCATCAATATAACTGACAAGCTAATGGTC
ATTCGAAGCACTCCACCCAAGTTAGCTGCAGCTCCAATTAGGGCATATTT
ACCCGGATGCAGGAACTCCGCCTGTGGGAATACATAGTAGGTAAGCATGG
CTAAAAGACGACCCCATGCTGCGCCGACCAGAGCAGTTGGGATGA
BO12893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8594-PA | 2442 | CG8594-RA | 1613..2439 | 845..19 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2647 | CG8594-RA | 1683..2509 | 845..19 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12574233..12574621 | 769..381 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 12574679..12574837 | 381..223 | 795 | 100 | Minus |
2R | 25286936 | 2R | 12575041..12575161 | 139..19 | 605 | 100 | Minus |
2R | 25286936 | 2R | 12574892..12574977 | 224..139 | 430 | 100 | Minus |
2R | 25286936 | 2R | 12574106..12574183 | 845..768 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:41:17 has no hits.
BO12893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:02 Download gff for
BO12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-PA | 1614..2442 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:28 Download gff for
BO12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-PA | 1614..2442 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:42 Download gff for
BO12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 1684..2516 | 10..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:07 Download gff for
BO12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 1684..2516 | 10..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:07 Download gff for
BO12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12574679..12574837 | 223..381 | 100 | -> | Minus |
2R | 12574894..12574977 | 139..222 | 100 | -> | Minus |
2R | 12575042..12575168 | 10..138 | 97 | | Minus |
2R | 12574107..12574182 | 769..844 | 100 | -> | Minus |
2R | 12574234..12574620 | 382..768 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:42 Download gff for
BO12893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8461612..8461687 | 769..844 | 100 | -> | Minus |
arm_2R | 8461739..8462125 | 382..768 | 100 | -> | Minus |
arm_2R | 8462184..8462342 | 223..381 | 100 | -> | Minus |
arm_2R | 8462399..8462482 | 139..222 | 100 | -> | Minus |
arm_2R | 8462547..8462673 | 10..138 | 97 | | Minus |
BO12893.5prime Sequence
877 bp (760 high quality bases) assembled on 2006-05-08
> BO12893.5prime
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAAGAGGGTCCATGATACATG
CTGGAGCTGTCGTCGCCGCCGGAATTT
BO12893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8594-PA | 2442 | CG8594-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
CG8594-PA | 2442 | CG8594-RA | 826..862 | 841..877 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2647 | CG8594-RA | 71..932 | 17..877 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12572982..12573296 | 564..877 | 1510 | 99.4 | Plus |
2R | 25286936 | 2R | 12572138..12572377 | 17..256 | 1200 | 100 | Plus |
2R | 25286936 | 2R | 12572688..12572891 | 360..563 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 12572501..12572605 | 257..361 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:54:50 has no hits.
BO12893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:03 Download gff for
BO12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-PA | 1..862 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:29 Download gff for
BO12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-PA | 1..862 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:41 Download gff for
BO12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..932 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:34 Download gff for
BO12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..932 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:34 Download gff for
BO12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12572138..12572377 | 17..256 | 100 | -> | Plus |
2R | 12572501..12572605 | 257..361 | 100 | -> | Plus |
2R | 12572690..12572891 | 362..563 | 100 | -> | Plus |
2R | 12572982..12573296 | 564..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:41 Download gff for
BO12893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8459643..8459882 | 17..256 | 100 | -> | Plus |
arm_2R | 8460006..8460110 | 257..361 | 100 | -> | Plus |
arm_2R | 8460195..8460396 | 362..563 | 100 | -> | Plus |
arm_2R | 8460487..8460801 | 564..877 | 99 | | Plus |
BO12893.complete Sequence
2473 bp assembled on 2008-01-17
GenBank Submission: FJ632628
> BO12893.complete
GAAGTTATCAGTCGACATGGACGATAGGAAGGCACTGATTACCCTCGATG
GCGAATCAAGCGCTGAGGATGATCCAATCATACTCCAAAAGGAGGCAGGT
CCAACTTCCAAAGCTGTGCAGGATTTCGGACTCCACCAAAGAGAAGAGCC
CTCCACTAGTGCTTTAGCTAGAAGAGCGACGCTTTCGGGGAATAACCACT
TATTGGATGATTCTCAGCCACTGCTAATGGGCAACAATTCAGTGCCTCCC
GATATTCCAATTAATGGAAGTGCAGGCAGCCCGAATAGGAACATCAACAG
CAGCGAACCCATTTTCCACCTCAGATCCCGAACAGCAGCCGCATCCACGC
CCAATTACGAGAGCTTGGACTACGAAGTATGCGAGAACACGCTCTTCCAG
GATGAGCAGCGAAAGAGGCTGACAGAGCGATTCTCCCTGCGCAAGGACAT
CATAAGATGGATCATTTTTATACAGATTGGCATTATCACCGCACTGATAG
CTTGCACCATAGATATTATAATCGAAGAGCTCTCGATACGAAAGTACACC
TTCCTCTACAATTCTGTTAAGGAAAATGTACCCTTAAGCGATGCTTCCGA
TAGAGATCTGCTGATTCCCTACCTTTACTGGCTCCTCTTCAGCATTGTGC
CCGTGGCCTTTGGAGCAGCCATGGTCACCTACATTGAGCCCATAACCGCT
GGCAGTGGGATTCCACAGGTGAAGAGCTACCTGAACGGCGTCAAAATACC
GCGTATTGTAAGAATTAAAACGCTGGCTGTGAAGGCGATTGGAGTTATAA
CCTCGGTGGTGGGTGGTTTGGCCGGAGGAAAGGAGGGTCCAATGATACAT
GCTGGAGCTGTCGTCGCCGCCGGAATTTCGCAGGGCAAAAGCACCACGTT
TTTGAAAGATTTCCGCATATTCAAGGCTTTTCGGGATGATCACGAGAAAA
GAGATTTCGTTCTTGGAGGCGGAGCCGCGGGAGTTTCAGCTGCTTTTGGA
GCTCCAATTGGAGGCATGCTTTTTTCTCTGGAGGAAGCGGCTAGTTTCTG
GAACCAGAATCTCATTTGGCGCACCTTAGTGGCCTCCATTATCAGCGTAT
TCACCTTGAATATCGTTTTATCAGCTTACCATGGCCTAAACGATTTCACG
TTCACGGGTCTCTTCAACTTGGGCAAGTTTGATACGCCTTTGAAATTCGA
CTACTTTGAGCTGCCCATCTTCATGATTCTGGGAGTAACTGGTGGATTAC
TCGGAGCCGCCTGGAACTCTCTTAATACCAAAATCAATAAATTTCGGAAG
CGCTTTATTCCGTGGAAAATCGGAAAGGTTCTCGAAGCTGTTGTAGTGGC
AATGATGGGCGTAACTTTGGCTTGTCTAATGATTTACTTTATCAACGATT
GTCGTCCACTGGGCAACGATCCGACCAACAATCCTGTACAGCTTTTCTGC
GAGGACAACGAATATAATGCCGTGGCTGCCTTGTGGTTTCAAACGCCAGA
GGCTACAGTCAGATCCTTGTTCCACGATCCTCCAGGATCCCATAAGATTC
TGACGCTAGCCCTTTTCACAGTTGTTTACTATGTGCTGTCCTGTGCTACG
TTTGGTCTCAATGTGTCCTTGGGTGTCTTCATCCCAACTGCTCTGGTCGG
CGCAGCATGGGGTCGTCTTTTAGCCATGCTTACCTACTATGTATTCCCAC
AGGCGGAGTTCCTGCATCCGGGTAAATATGCCCTAATTGGAGCTGCAGCT
AACTTGGGTGGAGTGCTTCGAATGACCATTAGCTTGTCAGTTATATTGAT
GGAAACCACTGGCGTGGAGACGTCCTTCTTCTTTCCCCTTATCATTGCAC
TTATCAGCGCCAAGTGGGTCGGTGACTACTTCAACGAGGGCATCTACGAT
ACGCAGATCCAAGTAAATCATGTGCCCATGCTGACCTGGGAGCCATTGCC
GCAATACAAGGGTCTGAAAGCTCGCGAAATTCTAAGCAAACCAGTGATCT
GTATCAAGATCCGCGATTCCGCTAATTACATATATGAGATGCTCAAGAAG
TGCGACCACAACGGATTTCCGGTGGTCGATGATGTTTGCGGAGATCGTCG
ATCGGAGGGTCGCGTTTGTGGCATCATCTTGCGCTCGCAACTGATTGTTA
TTTTGCTCAAATCCCTGTATGTGGAGAACAAACGATTCTGGCTGCCAGAA
ACTTCAATTCAGACATTCAGGGACCTCTATCCCCGTTTTCCATCAATCAA
GAGTGTTCGCAAGCTAGATGAGAAAATCAATTACACTGTGGACTTGTCCA
TGTTTATGAATCCATCACCTATTCGAGTCAATCCGCACGATTCGGTGCCT
AGAATTTTTCAGATATTCCGCGCATTGGGGTTGCGTCATTTGCTGGTCAT
CAACCATGAGAATCGCATTGCTGGCATTATAACGAGAAGGGATTTTATTT
ACAAGGCAAGCTTTCTAGACCAT
BO12893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2442 | CG8594-PA | 1..2439 | 17..2455 | 12195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-RA | 2647 | CG8594-RA | 71..2509 | 17..2455 | 12195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12572982..12573954 | 564..1536 | 4865 | 100 | Plus |
2R | 25286936 | 2R | 12574233..12574621 | 1705..2093 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 12572138..12572377 | 17..256 | 1200 | 100 | Plus |
2R | 25286936 | 2R | 12572688..12572891 | 360..563 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 12574011..12574183 | 1534..1706 | 865 | 100 | Plus |
2R | 25286936 | 2R | 12574679..12574837 | 2093..2251 | 795 | 100 | Plus |
2R | 25286936 | 2R | 12575041..12575161 | 2335..2455 | 605 | 100 | Plus |
2R | 25286936 | 2R | 12572501..12572605 | 257..361 | 525 | 100 | Plus |
2R | 25286936 | 2R | 12574892..12574977 | 2250..2335 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:41:22 has no hits.
BO12893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:10 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-RA | 1..2442 | 17..2459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:38 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-RA | 27..2465 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:30 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..2509 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:10 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8594-RA | 27..2472 | 17..2464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:18 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ClC-b-RA | 71..2509 | 17..2457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:18 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12572138..12572377 | 17..256 | 100 | -> | Plus |
2R | 12572501..12572605 | 257..361 | 100 | -> | Plus |
2R | 12572982..12573953 | 564..1535 | 100 | -> | Plus |
2R | 12574013..12574182 | 1536..1705 | 100 | -> | Plus |
2R | 12574234..12574620 | 1706..2092 | 100 | -> | Plus |
2R | 12574679..12574837 | 2093..2251 | 100 | -> | Plus |
2R | 12574894..12574977 | 2252..2335 | 100 | -> | Plus |
2R | 12575042..12575161 | 2336..2457 | 98 | | Plus |
2R | 12572690..12572891 | 362..563 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:30 Download gff for
BO12893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8460006..8460110 | 257..361 | 100 | -> | Plus |
arm_2R | 8459643..8459882 | 17..256 | 100 | -> | Plus |
arm_2R | 8460195..8460396 | 362..563 | 100 | -> | Plus |
arm_2R | 8460487..8461458 | 564..1535 | 100 | -> | Plus |
arm_2R | 8461518..8461687 | 1536..1705 | 100 | -> | Plus |
arm_2R | 8461739..8462125 | 1706..2092 | 100 | -> | Plus |
arm_2R | 8462184..8462342 | 2093..2251 | 100 | -> | Plus |
arm_2R | 8462399..8462482 | 2252..2335 | 100 | -> | Plus |
arm_2R | 8462547..8462666 | 2336..2457 | 98 | | Plus |
BO12893.pep Sequence
Translation from 16 to 2473
> BO12893.pep
MDDRKALITLDGESSAEDDPIILQKEAGPTSKAVQDFGLHQREEPSTSAL
ARRATLSGNNHLLDDSQPLLMGNNSVPPDIPINGSAGSPNRNINSSEPIF
HLRSRTAAASTPNYESLDYEVCENTLFQDEQRKRLTERFSLRKDIIRWII
FIQIGIITALIACTIDIIIEELSIRKYTFLYNSVKENVPLSDASDRDLLI
PYLYWLLFSIVPVAFGAAMVTYIEPITAGSGIPQVKSYLNGVKIPRIVRI
KTLAVKAIGVITSVVGGLAGGKEGPMIHAGAVVAAGISQGKSTTFLKDFR
IFKAFRDDHEKRDFVLGGGAAGVSAAFGAPIGGMLFSLEEAASFWNQNLI
WRTLVASIISVFTLNIVLSAYHGLNDFTFTGLFNLGKFDTPLKFDYFELP
IFMILGVTGGLLGAAWNSLNTKINKFRKRFIPWKIGKVLEAVVVAMMGVT
LACLMIYFINDCRPLGNDPTNNPVQLFCEDNEYNAVAALWFQTPEATVRS
LFHDPPGSHKILTLALFTVVYYVLSCATFGLNVSLGVFIPTALVGAAWGR
LLAMLTYYVFPQAEFLHPGKYALIGAAANLGGVLRMTISLSVILMETTGV
ETSFFFPLIIALISAKWVGDYFNEGIYDTQIQVNHVPMLTWEPLPQYKGL
KAREILSKPVICIKIRDSANYIYEMLKKCDHNGFPVVDDVCGDRRSEGRV
CGIILRSQLIVILLKSLYVENKRFWLPETSIQTFRDLYPRFPSIKSVRKL
DEKINYTVDLSMFMNPSPIRVNPHDSVPRIFQIFRALGLRHLLVINHENR
IAGIITRRDFIYKASFLDH
BO12893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ClC-b-PA | 813 | CG8594-PA | 1..813 | 1..813 | 4201 | 100 | Plus |
ClC-c-PB | 822 | CG5284-PB | 103..813 | 128..819 | 604 | 27.6 | Plus |
ClC-c-PD | 893 | CG5284-PD | 174..884 | 128..819 | 604 | 27.6 | Plus |
ClC-c-PC | 893 | CG5284-PC | 174..884 | 128..819 | 604 | 27.6 | Plus |
ClC-a-PG | 1018 | CG31116-PG | 124..606 | 148..650 | 409 | 27.4 | Plus |