Clone BO12896 Report

Search the DGRC for BO12896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4p1-RA
Protein status:BO12896.pep: validated full length
Sequenced Size:1573

Clone Sequence Records

BO12896.3prime Sequence

831 bp (752 high quality bases) assembled on 2006-05-08

> BO12896.3prime
ATGGTCTAGAAAGCTTGCCGTTCGCCTCACAAGCTTTACGCGAATCTTGT
CTTGGGTGCGCAGAGTTATACCCGTATGGAAGACAATCTTCTGCGGATCG
ATAGCCTTCAAAACCTTGAACTGCTTCAGAAGGACCACCATCAGCGTTTT
CATCTCCTGCATGGCATACTTTTTACCAATACAATTTCTTTGTCCAGCAC
TGAAGGGAACATAAGCGTACGTATGACGATCCTGCACATTTTCGGGTAGG
AATCTCTCAGGACGGAACTCTTCAGGCGAATCCCAGTACTTGGCGTTGCG
ATGGATGTCAAAGACATGAATGGTTATCTGGGCGCCCTTTGGCAGGATCA
GTCCATTGGCCAGTTCAGTCTCCTGGACGGCTTCACGACCCATAATCGGT
ACCGAGGGAAACAGGCGCGTAGTTTCCTTCATGAAGTACTCCAGATACTT
GAGCTTATTCAACTGGCCAACATCTAAGTTGCTCAGGTCATCATCTATGT
GCTCTTGAATCTCCTGGTAACATAACTCTTGCTTGTCTGGGTTTAGGGAC
ATGTTCATTAGACCAAAAATGAGCCCAATTGAGGTAGTATCGTAGCCCTC
AAACATCAGAGTGTCCACCTCCTCACAAATCCCAATGTGATCGATGAGGC
CATCCTTCTCAGCATAAATTAGGGTGTCCAGCATGGCGAAACGCTTCTTT
GAGACAAATCCATCATCATCAGCGGTGCTTGAACTTTTGTCCAGCTCATC
CTTTAGCAAGTCCCTCCTTTTGGCAATAATCTCGCTCGAAAATCTATGAA
CCACATCGAGTGCGGAAGCGAAATCCTTGGC

BO12896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10842-PA 1542 Cyp4p1-RA 727..1539 831..19 4065 100 Minus
CG10843-PA 1548 Cyp4p3-RA 907..1016 657..548 450 96.3 Minus
CG10843-PA 1548 Cyp4p3-RA 1398..1446 166..118 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p1-RA 1680 CG10842-RA 768..1580 831..19 4065 100 Minus
Cyp4p3-RA 1667 CG10843-RA 770..1578 828..26 1380 78.3 Minus
Cyp4p2-RA 1777 CG1944-RA 913..1590 700..23 900 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9241504..9241823 492..173 1600 100 Minus
2R 25286936 2R 9241232..9241450 710..492 1095 100 Minus
2R 25286936 2R 9241881..9242039 177..19 795 100 Minus
2R 25286936 2R 9243535..9243750 696..481 630 86.1 Minus
2R 25286936 2R 9241052..9241173 831..710 610 100 Minus
2R 25286936 2R 9243823..9244114 465..174 485 77.7 Minus
2R 25286936 2R 9239138..9239422 457..173 435 76.8 Minus
2R 25286936 2R 9238831..9238987 700..544 350 81.5 Minus
2R 25286936 2R 9239496..9239644 171..23 220 76.5 Minus
2R 25286936 2R 9243345..9243428 828..745 210 83.3 Minus
Blast to na_te.dros performed on 2015-02-10 20:53:06 has no hits.

BO12896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:08 Download gff for BO12896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10842-PA 727..1542 16..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:38 Download gff for BO12896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10842-PA 727..1542 16..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:16 Download gff for BO12896.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 768..1586 11..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:09 Download gff for BO12896.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 768..1586 11..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:09 Download gff for BO12896.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9241052..9241173 710..831 100 -> Minus
2R 9241233..9241450 492..709 100 -> Minus
2R 9241505..9241819 177..491 100 -> Minus
2R 9241882..9242045 11..176 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:16 Download gff for BO12896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5128557..5128678 710..831 100 -> Minus
arm_2R 5128738..5128955 492..709 100 -> Minus
arm_2R 5129010..5129324 177..491 100 -> Minus
arm_2R 5129387..5129550 11..176 97   Minus

BO12896.5prime Sequence

810 bp (730 high quality bases) assembled on 2006-05-08

> BO12896.5prime
GAAGTTATCAGTCGACATGATTATCTTGTGGCTGATTCTGGCCCTAAGTG
CCCTGCTCTACTGGCTCCACAGAGCCAACAAGGATTACCACATCCTGTCC
TTCTTCACCAAAAGAATTCGATTAAAGGATGGAACCCCTGTGGAGATCAT
CGCTCCCATAGCCAAGGGAAAAACAATATTCGGCAACACCCTTGACTTGT
ATGGGCGAGATCACGCTGGTGTTTTCAATTACTCGCGTGAGCGTGCTAAG
GAAATGGGTACTAGCTACATAGAATATGTCTTTGGAAAGGCGATTTACAA
CATTATCGATGCGGATAGCGCGGAAAATGTGCTGAATCATCCGAATCTCA
TAACCAAGGGGCTCGTCTACAACTTCCTACATCCATTCCTAAGGACGGGC
TTGCTGACATCGACTGGCAAAAAATGGCATGCTCGCCGCAAGATGCTCAC
TCCGACATTCCATTTCAACATATTGAACCAGTTCCAGGAGATCTTTAAAA
CGGAGAGTCAAAAGTTCCTGCTACAATTTGAGGGTCAAGATGAGGTAACC
ATAACGTTACACGATGTTATTCCAAGATTTACTCTAAACAGTATTTGTGA
AACCGCCATGGGTGTTAAGCTCGACGAGATGGCCGAGAAGGGGGATCGAT
ACCGGGAGAACTTCAGTCAGATTGAAGAATGCTTCATTCGTCGCTTGAGT
AACCCACTTTTATGGGGCGACAAGCTTTTCGAAATGTTTGCTGCCAAGGA
TTTCGCTTCCGCACTCGATGTGGTTCATAGATTTTCGAGCGAGATTATTG
CCAAAAGGAG

BO12896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10842-PA 1542 Cyp4p1-RA 1..794 17..810 3970 100 Plus
CG10843-PA 1548 Cyp4p3-RA 577..699 593..715 365 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p1-RA 1680 CG10842-RA 42..835 17..810 3970 100 Plus
Cyp4p3-RA 1667 CG10843-RA 166..834 142..810 1200 78.8 Plus
Cyp4p2-RA 1777 CG1944-RA 363..693 333..663 305 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9240908..9241119 599..810 1060 100 Plus
2R 25286936 2R 9240339..9240541 215..417 1015 100 Plus
2R 25286936 2R 9240082..9240280 17..215 995 100 Plus
2R 25286936 2R 9243204..9243409 605..810 640 87.4 Plus
2R 25286936 2R 9240737..9240842 494..599 515 99.1 Plus
2R 25286936 2R 9240603..9240685 416..498 415 100 Plus
2R 25286936 2R 9242900..9242978 419..497 200 83.5 Plus
2R 25286936 2R 9242640..9242785 215..360 190 75.3 Plus
2R 25286936 2R 9238097..9238172 422..497 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-11 12:56:42 has no hits.

BO12896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:09 Download gff for BO12896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10842-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:39 Download gff for BO12896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10842-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:19:00 Download gff for BO12896.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 42..835 17..810 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:13 Download gff for BO12896.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 42..835 17..810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:13 Download gff for BO12896.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9240082..9240280 17..215 100 -> Plus
2R 9240340..9240540 216..416 100 -> Plus
2R 9240604..9240685 417..498 100 -> Plus
2R 9240742..9240842 499..599 100 -> Plus
2R 9240909..9241119 600..810 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:19:00 Download gff for BO12896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5127587..5127785 17..215 100 -> Plus
arm_2R 5127845..5128045 216..416 100 -> Plus
arm_2R 5128109..5128190 417..498 100 -> Plus
arm_2R 5128247..5128347 499..599 100 -> Plus
arm_2R 5128414..5128624 600..810 100   Plus

BO12896.complete Sequence

1573 bp assembled on 2007-10-25

GenBank Submission: FJ632629

> BO12896.complete
GAAGTTATCAGTCGACATGATTATCTTGTGGCTGATTCTGGCCCTAAGTG
CCCTGCTCTACTGGCTCCACAGAGCCAACAAGGATTACCACATCCTGTCC
TTCTTCACCAAAAGAATTCGATTAAAGGATGGAACCCCTGTGGAGATCAT
CGCTCCCATAGCCAAGGGAAAAACAATATTCGGCAACACCCTTGACTTGT
ATGGGCGAGATCACGCTGGTGTTTTCAATTACTCGCGTGAGCGTGCTAAG
GAAATGGGTACTAGCTACATAGAATATGTCTTTGGAAAGGCGATTTACAA
CATTATCGATGCGGATAGCGCGGAAAATGTGCTGAATCATCCGAATCTCA
TAACCAAGGGGCTCGTCTACAACTTCCTACATCCATTCCTAAGGACGGGC
TTGCTGACATCGACTGGCAAAAAATGGCATGCTCGCCGCAAGATGCTCAC
TCCGACATTCCATTTCAACATATTGAACCAGTTCCAGGAGATCTTTAAAA
CGGAGAGTCAAAAGTTCCTGCTACAATTTGAGGGTCAAGATGAGGTAACC
ATAACGTTACACGATGTTATTCCAAGATTTACTCTAAACAGTATTTGTGA
AACCGCCATGGGTGTTAAGCTCGACGAGATGGCCGAGAAGGGGGATCGAT
ACCGGGAGAACTTCAGTCAGATTGAAGAATGCTTCATTCGTCGCTTGAGT
AACCCACTTTTATGGGGCGACAAGCTTTTCGAAATGTTTGCTGCCAAGGA
TTTCGCTTCCGCACTCGATGTGGTTCATAGATTTTCGAGCGAGATTATTG
CCAAAAGGAGGGACTTGCTAAAGGATGAGCTGGACAAAAGTTCAAGCACC
GCTGATGATGATGGATTTGTCTCAAAGAAGCGTTTCGCCATGCTGGACAC
CCTAATTTATGCTGAGAAGGATGGCCTCATCGATCACATTGGGATTTGTG
AGGAGGTGGACACTCTGATGTTTGAGGGCTACGATACTACCTCAATTGGG
CTCATTTTTGGTCTAATGAACATGTCCCTAAACCCAGACAAGCAAGAGTT
ATGTTACCAGGAGATTCAAGAGCACATAGATGATGACCTGAGCAACTTAG
ATGTTGGCCAGTTGAATAAGCTCAAGTATCTGGAGTACTTCATGAAGGAA
ACTACGCGCCTGTTTCCCTCGGTACCGATTATGGGTCGTGAAGCCGTCCA
GGAGACTGAACTGGCCAATGGACTGATCCTGCCAAAGGGCGCCCAGATAA
CCATTCATGTCTTTGACATCCATCGCAACGCCAAGTACTGGGATTCGCCT
GAAGAGTTCCGTCCTGAGAGATTCCTACCCGAAAATGTGCAGGATCGTCA
TACGTACGCTTATGTTCCCTTCAGTGCTGGACAAAGAAATTGTATTGGTA
AAAAGTATGCCATGCAGGAGATGAAAACGCTGATGGTGGTCCTTCTGAAG
CAGTTCAAGGTTTTGAAGGCTATCGATCCGCAGAAGATTGTCTTCCATAC
GGGTATAACTCTGCGCACCCAAGACAAGATTCGCGTAAAGCTTGTGAGGC
GAACGGCAAGCTTTCTAGACCAT

BO12896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p1-RA 1542 CG10842-PA 1..1539 17..1555 7695 100 Plus
Cyp4p3-RA 1548 CG10843-PA 126..1538 142..1548 2350 77.9 Plus
Cyp4p2-RA 1563 CG1944-PA 873..1550 874..1551 900 75.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p1-RA 1680 CG10842-RA 42..1580 17..1555 7695 100 Plus
Cyp4p3-RA 1667 CG10843-RA 166..1578 142..1548 2350 77.9 Plus
Cyp4p2-RA 1777 CG1944-RA 913..1590 874..1551 900 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9241504..9241823 1082..1401 1600 100 Plus
2R 25286936 2R 9240908..9241173 599..864 1330 100 Plus
2R 25286936 2R 9241232..9241450 864..1082 1095 100 Plus
2R 25286936 2R 9240339..9240541 215..417 1015 100 Plus
2R 25286936 2R 9240082..9240280 17..215 995 100 Plus
2R 25286936 2R 9241881..9242039 1397..1555 795 100 Plus
2R 25286936 2R 9243204..9243428 605..829 645 85.8 Plus
2R 25286936 2R 9243535..9243750 878..1093 630 86.1 Plus
2R 25286936 2R 9240737..9240842 494..599 515 99.1 Plus
2R 25286936 2R 9243823..9244114 1109..1400 485 77.7 Plus
2R 25286936 2R 9239138..9239422 1117..1401 435 76.8 Plus
2R 25286936 2R 9240603..9240685 416..498 415 100 Plus
2R 25286936 2R 9238831..9238987 874..1030 350 81.5 Plus
2R 25286936 2R 9239496..9239644 1403..1551 220 76.5 Plus
2R 25286936 2R 9242900..9242978 419..497 200 83.5 Plus
2R 25286936 2R 9242640..9242785 215..360 190 75.3 Plus
2R 25286936 2R 9238097..9238172 422..497 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:55:06 has no hits.

BO12896.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:11 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 1..1542 17..1558 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:52 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 40..1584 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:46 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 42..1580 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:36 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 40..1578 17..1557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:01 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 42..1580 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:01 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9241233..9241450 865..1082 100 -> Plus
2R 9240082..9240280 17..215 100 -> Plus
2R 9240340..9240540 216..416 100 -> Plus
2R 9240604..9240685 417..498 100 -> Plus
2R 9240742..9240842 499..599 100 -> Plus
2R 9240909..9241173 600..864 100 -> Plus
2R 9241505..9241819 1083..1397 100 -> Plus
2R 9241882..9242039 1398..1557 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:46 Download gff for BO12896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5127587..5127785 17..215 100 -> Plus
arm_2R 5127845..5128045 216..416 100 -> Plus
arm_2R 5128109..5128190 417..498 100 -> Plus
arm_2R 5128247..5128347 499..599 100 -> Plus
arm_2R 5128414..5128678 600..864 100 -> Plus
arm_2R 5128738..5128955 865..1082 100 -> Plus
arm_2R 5129010..5129324 1083..1397 100 -> Plus
arm_2R 5129387..5129544 1398..1557 98   Plus

BO12896.pep Sequence

Translation from 16 to 1573

> BO12896.pep
MIILWLILALSALLYWLHRANKDYHILSFFTKRIRLKDGTPVEIIAPIAK
GKTIFGNTLDLYGRDHAGVFNYSRERAKEMGTSYIEYVFGKAIYNIIDAD
SAENVLNHPNLITKGLVYNFLHPFLRTGLLTSTGKKWHARRKMLTPTFHF
NILNQFQEIFKTESQKFLLQFEGQDEVTITLHDVIPRFTLNSICETAMGV
KLDEMAEKGDRYRENFSQIEECFIRRLSNPLLWGDKLFEMFAAKDFASAL
DVVHRFSSEIIAKRRDLLKDELDKSSSTADDDGFVSKKRFAMLDTLIYAE
KDGLIDHIGICEEVDTLMFEGYDTTSIGLIFGLMNMSLNPDKQELCYQEI
QEHIDDDLSNLDVGQLNKLKYLEYFMKETTRLFPSVPIMGREAVQETELA
NGLILPKGAQITIHVFDIHRNAKYWDSPEEFRPERFLPENVQDRHTYAYV
PFSAGQRNCIGKKYAMQEMKTLMVVLLKQFKVLKAIDPQKIVFHTGITLR
TQDKIRVKLVRRTASFLDH

BO12896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p1-PA 513 CG10842-PA 1..513 1..513 2668 100 Plus
Cyp4p3-PA 515 CG10843-PA 1..514 1..512 2070 76.1 Plus
Cyp4p2-PA 520 CG1944-PA 5..517 3..512 1802 66.3 Plus
Cyp4ac1-PA 509 CG14032-PA 5..507 3..512 1183 47.5 Plus
Cyp4ac2-PB 511 CG17970-PB 20..508 16..512 1138 47.1 Plus