Clone Sequence Records
BO12908.3prime Sequence
758 bp (717 high quality bases) assembled on 2006-05-08
> BO12908.3prime
ATGGTCTAGAAAGCTTGCGTATTCCATGGCCACGGCCCCCGAACCGTTGT
GCCCCGCCCCGTTCTGTGCCACCGCCTCCATCTCGTGCTGAAACTTATCC
GGCAGCTGGCCGCTTTGCAGGATCTGCGATAGACGCTCCACCTCTGCCAG
AGAGCTGGCCCGCTTGATGGCCTCGCGGATGCGCTGCATGTCCTGCGGAT
TGGCCAGTCGTCCGCCTTCCGATCCCCTTCCCTTGCCATTCCCCGCCTCT
GCAGCTATGGCGGCTGCGGCGCTCATCTTGGACTTCCGGCTAATCTCCTT
TAGCACGTCCTTGCCCTGCTTGGTGCGGAAGAACTCCTGCGCCGCCTGGC
GGTCCTTCTGCTTGATCTTCCTGAAGTCGAGTAGCCGCAGCTGCGGGAAC
TTGTAGGCCATGTACTCGCGGTAGTTGGGCTTCGTGGATACCGGGTTGAT
AAGCAGGCAGATGGTTTCCAGCTTGGTGAATCCGACCAGGGGCTCTAAGT
CGCTCAGCTCCTGCAGGTTGTTGCCGGTGAGAATGATGGAGCCCAGGTTG
GGCACCGCCTCCTCCAGCCCTTCGCTGATGCGCAGGATGCGGTTGTTGTT
CAGCAGCAGGCACTTGAGGCGCGGCAGATGCGGCAGGTTGTCCAGCTTGC
GCAGATCGTTGTCGGACAAGTCGATGGTATCAAACTGGTCCAGAGTTGCG
CCCAGGTTCTCGATTTGTGAAATCTTATAGCCGCGCAAATCCAGCTCCGC
GCTCCCGG
BO12908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1406-PA | 798 | U2A-RA | 67..795 | 747..19 | 3620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 1001 | CG1406-RA | 184..922 | 758..19 | 3660 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7675441..7676179 | 19..758 | 3635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:52:38 has no hits.
BO12908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:25 Download gff for
BO12908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-PA | 57..798 | 18..758 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:58 Download gff for
BO12908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1406-PA | 57..798 | 18..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:12 Download gff for
BO12908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 184..922 | 19..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:16 Download gff for
BO12908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 184..922 | 19..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:16 Download gff for
BO12908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7675441..7676179 | 19..758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:12 Download gff for
BO12908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3562946..3563684 | 19..758 | 99 | | Plus |
BO12908.5prime Sequence
727 bp (702 high quality bases) assembled on 2006-05-08
> BO12908.5prime
GAAGTTATCAGTCGACATGGTGAAACTAACGCCGGAGCTGATAAACCAGT
CGATGCAATACATAAACCCATGCCGGGAGCGCGAGCTGGATTTGCGCGGC
TATAAGATTCCACAAATCGAGAACCTGGGCGCAACTCTGGACCAGTTTGA
TACCATCGACTTGTCCGACAACGATCTGCGCAAGCTGGACAACCTGCCGC
ATCTGCCGCGCCTCAAGTGCCTGCTGCTGAACAACAACCGCATCCTGCGC
ATCAGCGAAGGGCTGGAGGAGGCGGTGCCCAACCTGGGCTCCATCATTCT
CACCGGCAACAACCTGCAGGAGCTGAGCGACTTAGAGCCCCTGGTCGGAT
TCACCAAGCTGGAAACCATCTGCCTGCTTATCAACCCGGTATCCACGAAG
CCCAACTACCGCGAGTACATGGCCTACAAGTTCCCGCAGCTGCGGCTACT
CGACTTCAGGAAGATCAAGCAGAAGGACCGCCAGGCGGCGCAGGAGTTCT
TCCGCACCAAGCAGGGCAAGGACGTGCTAAAGGAGATTAGCCGGAAGTCC
AAGATGAGCGCCGCAGCCGCCATAGCTGCAGAGGCGGGGAATGGCAAGGG
AAGGGGATCGGAAGGCGGACGACTGGCCAATCCGCAGGACATGCAGCGCA
TCCGCGAGGCCATCAAGCGGGCCAGCTCTCTGGCAGAGGTGGAGCGTCTA
TCGCAGATCCTGCAAAGCGGCCAGCTG
BO12908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1406-PA | 798 | U2A-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 1001 | CG1406-RA | 128..838 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7675525..7676235 | 727..17 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:13:25 has no hits.
BO12908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:26 Download gff for
BO12908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-PA | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:00 Download gff for
BO12908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1406-PA | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:31 Download gff for
BO12908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..838 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:57 Download gff for
BO12908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..838 | 17..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:57 Download gff for
BO12908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7675525..7676235 | 17..727 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:31 Download gff for
BO12908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3563030..3563740 | 17..727 | 100 | | Minus |
BO12908.complete Sequence
829 bp assembled on 2006-10-11
GenBank Submission: FJ632630
> BO12908.complete
GAAGTTATCAGTCGACATGGTGAAACTAACGCCGGAGCTGATAAACCAGT
CGATGCAATACATAAACCCATGCCGGGAGCGCGAGCTGGATTTGCGCGGC
TATAAGATTCCACAAATCGAGAACCTGGGCGCAACTCTGGACCAGTTTGA
TACCATCGACTTGTCCGACAACGATCTGCGCAAGCTGGACAACCTGCCGC
ATCTGCCGCGCCTCAAGTGCCTGCTGCTGAACAACAACCGCATCCTGCGC
ATCAGCGAAGGGCTGGAGGAGGCGGTGCCCAACCTGGGCTCCATCATTCT
CACCGGCAACAACCTGCAGGAGCTGAGCGACTTAGAGCCCCTGGTCGGAT
TCACCAAGCTGGAAACCATCTGCCTGCTTATCAACCCGGTATCCACGAAG
CCCAACTACCGCGAGTACATGGCCTACAAGTTCCCGCAGCTGCGGCTACT
CGACTTCAGGAAGATCAAGCAGAAGGACCGCCAGGCGGCGCAGGAGTTCT
TCCGCACCAAGCAGGGCAAGGACGTGCTAAAGGAGATTAGCCGGAAGTCC
AAGATGAGCGCCGCAGCCGCCATAGCTGCAGAGGCGGGGAATGGCAAGGG
AAGGGGATCGGAAGGCGGACGACTGGCCAATCCGCAGGACATGCAGCGCA
TCCGCGAGGCCATCAAGCGGGCCAGCTCTCTGGCAGAGGTGGAGCGTCTA
TCGCAGATCCTGCAAAGCGGCCAGCTGCCGGATAAGTTTCAGCACGAGAT
GGAGGCGGTGGCACAGAACGGGGCGGGGCACAACGGTTCGGGGGCCGTGG
CCATGGAATACGCAAGCTTTCTAGACCAT
BO12908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 798 | CG1406-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-RA | 1001 | CG1406-RA | 128..922 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7675441..7676235 | 811..17 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:33:42 has no hits.
BO12908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:15 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:24 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 118..912 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:51 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..922 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:15 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 118..912 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:17 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2A-RA | 128..922 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:17 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7675439..7676235 | 17..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:51 Download gff for
BO12908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3562944..3563740 | 17..813 | 99 | | Minus |
BO12908.pep Sequence
Translation from 16 to 829
> BO12908.pep
MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLS
DNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNL
QELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKI
KQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEG
GRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQ
NGAGHNGSGAVAMEYASFLDH
BO12908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2A-PA | 265 | CG1406-PA | 1..265 | 1..265 | 1341 | 100 | Plus |
| tilB-PA | 395 | CG14620-PA | 1..232 | 1..222 | 153 | 28.6 | Plus |
