Clone Sequence Records
BO12909.complete Sequence
1123 bp assembled on 2010-04-13
GenBank Submission: KX795711
> BO12909.complete
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGC
GGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCA
GCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCC
GGCATCGATTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAA
TCACGACAACAACGAGCAGCCCAGCTTTCTAGTGCTCCTCGCATGCGGCA
GTACATCGAGCACACTCGGGCAGCTCTGCTCGTACCCGCTGGCCCTGGTG
CGCACTCGGCTACAGGCACAAGCCGCCGAAACAATTGCCAATCAAAAGCG
GAAAACGCAAATACCCCTGAAGAGCAGCGACGCGCACAGCGGCGAGGAAA
CGATGACGGGCCTGTTCCGCAAGATCGTGCGACAGGAGGGACTGACGGGG
CTGTACCGCGGCATAACGCCAAACTTCCTCAAGGTCCTGCCGGCGGTGTC
CATCAGCTACGTGGTGTACGAGTATACGAGTCGCGCCCTGGGCATTAAGA
TGTCGGCAAGCTTTCTAGACCAT
BO12909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RC | 1092 | CG32103-PC | 1..1089 | 17..1105 | 5430 | 99.9 | Plus |
CG32103-RE | 1752 | CG32103-PE | 784..1749 | 140..1105 | 4815 | 99.9 | Plus |
CG32103-RD | 1053 | CG32103-PD | 85..1050 | 140..1105 | 4815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RC | 2060 | CG32103-RC | 419..1507 | 17..1105 | 5430 | 99.9 | Plus |
CG32103-RE | 3836 | CG32103-RE | 1108..2073 | 140..1105 | 4815 | 99.9 | Plus |
CG32103-RD | 1603 | CG32103-RD | 85..1050 | 140..1105 | 4815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12404363..12404939 | 872..296 | 2885 | 100 | Minus |
3L | 28110227 | 3L | 12404058..12404292 | 1105..871 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 12405000..12405161 | 300..139 | 795 | 99.4 | Minus |
3L | 28110227 | 3L | 12408110..12408232 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:26:29 has no hits.
BO12909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:48 Download gff for
BO12909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 415..1503 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:59 Download gff for
BO12909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1507 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:47 Download gff for
BO12909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1507 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:47 Download gff for
BO12909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12404055..12404290 | 873..1107 | 99 | <- | Minus |
3L | 12404363..12404936 | 299..872 | 100 | <- | Minus |
3L | 12405002..12405160 | 140..298 | 99 | <- | Minus |
3L | 12408110..12408232 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:59 Download gff for
BO12909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12397155..12397390 | 873..1107 | 99 | <- | Minus |
arm_3L | 12397463..12398036 | 299..872 | 100 | <- | Minus |
arm_3L | 12398102..12398260 | 140..298 | 99 | <- | Minus |
arm_3L | 12401210..12401332 | 17..139 | 100 | | Minus |
BO12909.3prime Sequence
687 bp (536 high quality bases) assembled on 2006-05-08
> BO12909.3prime
ATGGTCTAGAAAGCTTGCCGACATCTTAATGCCCAGGGCGCGACTCGTAT
ACTCGTACACCACGTAGCTGATGGACACCGCCGGCAGGACCTTGAGGAAG
TTTGGCGTTATGCCGCGGTACAGCCCCGTCAGTCCCTCCTGTCGCACGAT
CTTGCGGAACAGGCCCGTCATCGTTTCCTCGCCGCTGTGCGCGTCGCTGC
TCTTCAGGGGTATTTGCGTTTTCCGCTTTTGATTGGCAATTGTTTCGGCG
GCTTGTGCCTGTAGCCGAGTGCGCACCAGGGCCAGCGGGTACGAGCAGAG
CTGCCCGAGTGTGCTCGATGTACTGCCGCATGCGAGGAGCACTAGAAAGC
TGGGCTGCTCGTTGTTGTCGTGATTGGCAATGTACCGCCTCTTGAGGGTT
TCATATACCGCCAAATCGATGCCGGCATAGGGCAGAATACCCAGGATGTT
CGGTACATAGCCACGATAGAAGCTGCGCACTCCTTCCTGCTTGTAGATCT
TGACCGCCGCATCGGCAATACCCGCATACTGTCCCGTTCTCCGGAGCGCC
AGGCGCGTCTTTAATACTTCCATGGGGTAGATGATGGTCTGTGAAATTCC
GCCTGCCGCTGCGCCCGCATAGAATCGCTCCACGATGCTCATCTGGCGGC
TGCCATCGTCACCGCGAATCATTCGCTTTCTCTGTTC
BO12909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-PB | 1752 | CG32103-RB | 1090..1749 | 678..19 | 3275 | 99.8 | Minus |
CG32103-PC | 1092 | CG32103-RC | 430..1089 | 678..19 | 3275 | 99.8 | Minus |
CG32103-PA | 1752 | CG32103-RA | 1090..1749 | 678..19 | 3275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RE | 3836 | CG32103-RE | 1405..2073 | 687..19 | 3300 | 99.6 | Minus |
CG32103-RD | 1603 | CG32103-RD | 382..1050 | 687..19 | 3300 | 99.6 | Minus |
CG32103-RC | 2060 | CG32103-RC | 839..1507 | 687..19 | 3300 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12404363..12404798 | 252..687 | 2135 | 99.3 | Plus |
3L | 28110227 | 3L | 12404058..12404292 | 19..253 | 1175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:38:00 has no hits.
BO12909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:27 Download gff for
BO12909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-PB | 1081..1752 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:01 Download gff for
BO12909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-PA | 1081..1752 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:21 Download gff for
BO12909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 839..1507 | 19..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:52 Download gff for
BO12909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 839..1507 | 19..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:52 Download gff for
BO12909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12404058..12404290 | 19..251 | 100 | <- | Plus |
3L | 12404363..12404798 | 252..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:21 Download gff for
BO12909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12397158..12397390 | 19..251 | 100 | <- | Plus |
arm_3L | 12397463..12397898 | 252..687 | 99 | | Plus |
BO12909.5prime Sequence
623 bp (523 high quality bases) assembled on 2006-05-08
> BO12909.5prime
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTAAT
GCGGGTATTGCCGATGCGGCGGT
BO12909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-PC | 1092 | CG32103-RC | 1..548 | 17..564 | 2715 | 99.8 | Plus |
CG32103-PB | 1752 | CG32103-RB | 784..1208 | 140..564 | 2100 | 99.7 | Plus |
CG32103-PA | 1752 | CG32103-RA | 784..1208 | 140..564 | 2100 | 99.7 | Plus |
CG32103-PC | 1092 | CG32103-RC | 546..581 | 563..598 | 180 | 100 | Plus |
CG32103-PB | 1752 | CG32103-RB | 1206..1241 | 563..598 | 180 | 100 | Plus |
CG32103-PA | 1752 | CG32103-RA | 1206..1241 | 563..598 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-RC | 2060 | CG32103-RC | 419..1023 | 17..623 | 2970 | 99.5 | Plus |
CG32103-RE | 3836 | CG32103-RE | 1108..1589 | 140..623 | 2355 | 99.4 | Plus |
CG32103-RD | 1603 | CG32103-RD | 85..566 | 140..623 | 2355 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12404614..12404939 | 623..296 | 1540 | 99.4 | Minus |
3L | 28110227 | 3L | 12405000..12405161 | 300..139 | 795 | 99.4 | Minus |
3L | 28110227 | 3L | 12408110..12408232 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:25:45 has no hits.
BO12909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:28 Download gff for
BO12909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-PC | 1..605 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:02 Download gff for
BO12909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-PC | 1..605 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:40 Download gff for
BO12909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1023 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:35 Download gff for
BO12909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32103-RC | 419..1023 | 17..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:35 Download gff for
BO12909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12404614..12404936 | 299..623 | 99 | <- | Minus |
3L | 12405002..12405160 | 140..298 | 99 | <- | Minus |
3L | 12408110..12408232 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:40 Download gff for
BO12909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12397714..12398036 | 299..623 | 99 | <- | Minus |
arm_3L | 12398102..12398260 | 140..298 | 99 | <- | Minus |
arm_3L | 12401210..12401332 | 17..139 | 100 | | Minus |
BO12909.pep Sequence
Translation from 16 to 1123
> BO12909.pep
MLRNSTYQYNLPVDYHNIQQMAVAGDMMEDFVVIFRDMMGRYLDIGEDMN
VPDDFTQKEMQTGLWWRHLVAGGIAGAVSRTCTAPLDRIKVYLQVQTQRM
GISECMHIMLNEGGSRSMWRGNGINVLKIAPETAFKFAAYEQMKRLIRGD
DGSRQMSIVERFYAGAAAGGISQTIIYPMEVLKTRLALRRTGQYAGIADA
AVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANHDNNE
QPSFLVLLACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIP
LKSSDAHSGEETMTGLFRKIVRQEGLTGLYRGITPNFLKVLPAVSISYVV
YEYTSRALGIKMSASFLDH
BO12909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32103-PC | 363 | CG32103-PC | 1..363 | 1..363 | 1864 | 100 | Plus |
CG32103-PD | 350 | CG32103-PD | 24..350 | 37..363 | 1649 | 98.5 | Plus |
CG32103-PE | 583 | CG32103-PE | 262..583 | 42..363 | 1648 | 100 | Plus |
CG32103-PB | 583 | CG32103-PB | 262..583 | 42..363 | 1648 | 100 | Plus |
att-ORFA-PE | 290 | CG4241-PE | 1..273 | 69..352 | 422 | 35.8 | Plus |