Clone BO12909 Report

Search the DGRC for BO12909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG32103-RC
Protein status:BO12909.pep: Imported from assembly
Sequenced Size:1123

Clone Sequence Records

BO12909.complete Sequence

1123 bp assembled on 2010-04-13

GenBank Submission: KX795711

> BO12909.complete
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGC
GGGTATTGCCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCA
GCTTCTATCGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCC
GGCATCGATTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAA
TCACGACAACAACGAGCAGCCCAGCTTTCTAGTGCTCCTCGCATGCGGCA
GTACATCGAGCACACTCGGGCAGCTCTGCTCGTACCCGCTGGCCCTGGTG
CGCACTCGGCTACAGGCACAAGCCGCCGAAACAATTGCCAATCAAAAGCG
GAAAACGCAAATACCCCTGAAGAGCAGCGACGCGCACAGCGGCGAGGAAA
CGATGACGGGCCTGTTCCGCAAGATCGTGCGACAGGAGGGACTGACGGGG
CTGTACCGCGGCATAACGCCAAACTTCCTCAAGGTCCTGCCGGCGGTGTC
CATCAGCTACGTGGTGTACGAGTATACGAGTCGCGCCCTGGGCATTAAGA
TGTCGGCAAGCTTTCTAGACCAT

BO12909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RC 1092 CG32103-PC 1..1089 17..1105 5430 99.9 Plus
CG32103-RE 1752 CG32103-PE 784..1749 140..1105 4815 99.9 Plus
CG32103-RD 1053 CG32103-PD 85..1050 140..1105 4815 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RC 2060 CG32103-RC 419..1507 17..1105 5430 99.9 Plus
CG32103-RE 3836 CG32103-RE 1108..2073 140..1105 4815 99.9 Plus
CG32103-RD 1603 CG32103-RD 85..1050 140..1105 4815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12404363..12404939 872..296 2885 100 Minus
3L 28110227 3L 12404058..12404292 1105..871 1175 100 Minus
3L 28110227 3L 12405000..12405161 300..139 795 99.4 Minus
3L 28110227 3L 12408110..12408232 139..17 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:26:29 has no hits.

BO12909.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:48 Download gff for BO12909.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 415..1503 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:59 Download gff for BO12909.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1507 17..1107 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:47 Download gff for BO12909.complete
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1507 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:47 Download gff for BO12909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12404055..12404290 873..1107 99 <- Minus
3L 12404363..12404936 299..872 100 <- Minus
3L 12405002..12405160 140..298 99 <- Minus
3L 12408110..12408232 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:59 Download gff for BO12909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12397155..12397390 873..1107 99 <- Minus
arm_3L 12397463..12398036 299..872 100 <- Minus
arm_3L 12398102..12398260 140..298 99 <- Minus
arm_3L 12401210..12401332 17..139 100   Minus

BO12909.3prime Sequence

687 bp (536 high quality bases) assembled on 2006-05-08

> BO12909.3prime
ATGGTCTAGAAAGCTTGCCGACATCTTAATGCCCAGGGCGCGACTCGTAT
ACTCGTACACCACGTAGCTGATGGACACCGCCGGCAGGACCTTGAGGAAG
TTTGGCGTTATGCCGCGGTACAGCCCCGTCAGTCCCTCCTGTCGCACGAT
CTTGCGGAACAGGCCCGTCATCGTTTCCTCGCCGCTGTGCGCGTCGCTGC
TCTTCAGGGGTATTTGCGTTTTCCGCTTTTGATTGGCAATTGTTTCGGCG
GCTTGTGCCTGTAGCCGAGTGCGCACCAGGGCCAGCGGGTACGAGCAGAG
CTGCCCGAGTGTGCTCGATGTACTGCCGCATGCGAGGAGCACTAGAAAGC
TGGGCTGCTCGTTGTTGTCGTGATTGGCAATGTACCGCCTCTTGAGGGTT
TCATATACCGCCAAATCGATGCCGGCATAGGGCAGAATACCCAGGATGTT
CGGTACATAGCCACGATAGAAGCTGCGCACTCCTTCCTGCTTGTAGATCT
TGACCGCCGCATCGGCAATACCCGCATACTGTCCCGTTCTCCGGAGCGCC
AGGCGCGTCTTTAATACTTCCATGGGGTAGATGATGGTCTGTGAAATTCC
GCCTGCCGCTGCGCCCGCATAGAATCGCTCCACGATGCTCATCTGGCGGC
TGCCATCGTCACCGCGAATCATTCGCTTTCTCTGTTC

BO12909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-PB 1752 CG32103-RB 1090..1749 678..19 3275 99.8 Minus
CG32103-PC 1092 CG32103-RC 430..1089 678..19 3275 99.8 Minus
CG32103-PA 1752 CG32103-RA 1090..1749 678..19 3275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RE 3836 CG32103-RE 1405..2073 687..19 3300 99.6 Minus
CG32103-RD 1603 CG32103-RD 382..1050 687..19 3300 99.6 Minus
CG32103-RC 2060 CG32103-RC 839..1507 687..19 3300 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12404363..12404798 252..687 2135 99.3 Plus
3L 28110227 3L 12404058..12404292 19..253 1175 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:38:00 has no hits.

BO12909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:27 Download gff for BO12909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-PB 1081..1752 16..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:01 Download gff for BO12909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-PA 1081..1752 16..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:21 Download gff for BO12909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 839..1507 19..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:52 Download gff for BO12909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 839..1507 19..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:52 Download gff for BO12909.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12404058..12404290 19..251 100 <- Plus
3L 12404363..12404798 252..687 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:21 Download gff for BO12909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12397158..12397390 19..251 100 <- Plus
arm_3L 12397463..12397898 252..687 99   Plus

BO12909.5prime Sequence

623 bp (523 high quality bases) assembled on 2006-05-08

> BO12909.5prime
GAAGTTATCAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGC
CCGTCGATTACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATG
GAGGACTTTGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACAT
TGGCGAGGATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGA
CGGGCCTCTGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTT
TCTCGGACGTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGT
ACAAACACAAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACG
AGGGCGGATCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAG
ATTGCCCCCGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCG
ACTGATTCGCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGAT
TCTATGCGGGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCC
ATGGAAGTATTAAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTAAT
GCGGGTATTGCCGATGCGGCGGT

BO12909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-PC 1092 CG32103-RC 1..548 17..564 2715 99.8 Plus
CG32103-PB 1752 CG32103-RB 784..1208 140..564 2100 99.7 Plus
CG32103-PA 1752 CG32103-RA 784..1208 140..564 2100 99.7 Plus
CG32103-PC 1092 CG32103-RC 546..581 563..598 180 100 Plus
CG32103-PB 1752 CG32103-RB 1206..1241 563..598 180 100 Plus
CG32103-PA 1752 CG32103-RA 1206..1241 563..598 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-RC 2060 CG32103-RC 419..1023 17..623 2970 99.5 Plus
CG32103-RE 3836 CG32103-RE 1108..1589 140..623 2355 99.4 Plus
CG32103-RD 1603 CG32103-RD 85..566 140..623 2355 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12404614..12404939 623..296 1540 99.4 Minus
3L 28110227 3L 12405000..12405161 300..139 795 99.4 Minus
3L 28110227 3L 12408110..12408232 139..17 615 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:25:45 has no hits.

BO12909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:28 Download gff for BO12909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-PC 1..605 17..623 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:02 Download gff for BO12909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-PC 1..605 17..623 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:40 Download gff for BO12909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1023 17..623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:35 Download gff for BO12909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32103-RC 419..1023 17..623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:35 Download gff for BO12909.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12404614..12404936 299..623 99 <- Minus
3L 12405002..12405160 140..298 99 <- Minus
3L 12408110..12408232 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:40 Download gff for BO12909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12397714..12398036 299..623 99 <- Minus
arm_3L 12398102..12398260 140..298 99 <- Minus
arm_3L 12401210..12401332 17..139 100   Minus

BO12909.pep Sequence

Translation from 16 to 1123

> BO12909.pep
MLRNSTYQYNLPVDYHNIQQMAVAGDMMEDFVVIFRDMMGRYLDIGEDMN
VPDDFTQKEMQTGLWWRHLVAGGIAGAVSRTCTAPLDRIKVYLQVQTQRM
GISECMHIMLNEGGSRSMWRGNGINVLKIAPETAFKFAAYEQMKRLIRGD
DGSRQMSIVERFYAGAAAGGISQTIIYPMEVLKTRLALRRTGQYAGIADA
AVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANHDNNE
QPSFLVLLACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIP
LKSSDAHSGEETMTGLFRKIVRQEGLTGLYRGITPNFLKVLPAVSISYVV
YEYTSRALGIKMSASFLDH

BO12909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32103-PC 363 CG32103-PC 1..363 1..363 1864 100 Plus
CG32103-PD 350 CG32103-PD 24..350 37..363 1649 98.5 Plus
CG32103-PE 583 CG32103-PE 262..583 42..363 1648 100 Plus
CG32103-PB 583 CG32103-PB 262..583 42..363 1648 100 Plus
att-ORFA-PE 290 CG4241-PE 1..273 69..352 422 35.8 Plus