Clone BO12912 Report

Search the DGRC for BO12912

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG14015-RA
Protein status:BO12912.pep: Imported from assembly
Sequenced Size:1483

Clone Sequence Records

BO12912.3prime Sequence

685 bp (681 high quality bases) assembled on 2006-05-08

> BO12912.3prime
ATGGTCTAGAAAGCTTGCGCATATGGTTCCATTGAGCAGCTCGTAACAGT
TGGGCGGCGATGCTGGCGAGGCTGCTGCCGCCGCCTCCTGTCGCGTCTTC
AGAAAGTTGCCCACCCAATGGGCCGTGAGATCCAGATATTTCGTTCTCGA
GCCCGGATTGTAGTCGAGGAAGCCGGCGCGTGGCATCACCTCCTCGATCT
GGCTGCCATCCGGCCAGTTGTTGTAGCTGGCTATGTTGATGAAGCCCACG
TGGTTGAGAATGGCTGTCCGCCAGGCCACGCCATAGTACCGTCCATTGCT
GCGATGCCGCTGGATGTCTCCGTGTCGCGGAAACTTGTTCCTCTCCGCGA
ATCCCGGACCCACCGTGGGCACAAAGAGCATCTTGTAGGACAGCGCAAAT
GACTTCAGATACGACCAGTTCTTCCAAGTGCTGGCGAAGACAGCTCCATT
GCTGGGCAGTTTGCTGTAGAAGCCATCGAAGCACAACCTCCGCAGGACAT
CGGCATGGCTTTTGAGCCTTATGTGTCCAATGAATAAGGCATCCAGAATT
CTCCGCAGACCATCCGGTTCCACCAGCGAAGGCGATCGACACAACAGCCT
TCCCAGACTATCACTCAACTTGTAGGCATTGCTCACGTAGAGAACCGGCA
GGGAGACACCTCTCGACTGACTCCACACCTTGTAG

BO12912.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-PA 1452 CG14015-RA 783..1449 685..19 3335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-RA 2148 CG14015-RA 869..1535 685..19 3335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5537463..5537733 19..289 1355 100 Plus
2L 23513712 2L 5537801..5538031 289..519 1155 100 Plus
2L 23513712 2L 5538087..5538255 517..685 845 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:38:11 has no hits.

BO12912.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:33 Download gff for BO12912.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-PA 783..1452 18..685 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:10 Download gff for BO12912.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-PA 783..1452 18..685 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:59 Download gff for BO12912.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 869..1535 19..685 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:18 Download gff for BO12912.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 869..1535 19..685 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:18 Download gff for BO12912.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5537463..5537732 19..288 100 <- Plus
2L 5537801..5538029 289..517 100 <- Plus
2L 5538088..5538255 518..685 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:59 Download gff for BO12912.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5537463..5537732 19..288 100 <- Plus
arm_2L 5537801..5538029 289..517 100 <- Plus
arm_2L 5538088..5538255 518..685 100   Plus

BO12912.5prime Sequence

715 bp (696 high quality bases) assembled on 2006-05-08

> BO12912.5prime
GAAGTTATCAGTCGACATGCTGCTAAAAAAGTATGTGAAAACGCGGCGTA
AGCTGAAGATTCTACTCCTGCTGGCCATCGTCGCCCTGCTGGTCATCACC
ATCATAGTGCTGGGCTCCAGCGGACGCAATGCGGCCATCGAACTGCTGCT
GGACGAGCGATTCATCGCACGCGCCTACAGGCCCGGGGATCAGCCCCAAG
TGGCGGAGAAGCCGCCGCCGGTGGCCGTCGCGCTGCTCCAGCCGCAGCGG
GAGAACGGAGTGATTGTGCCCGAGAAGTATGACGAGCAGAAGATCAAGGA
GCGCATCATTCAGAGCAAAATCGATCTGATGAAGCAGCAGCAGCAGCGGG
ACCACGAGGCGGAGCAGTCTTCGCGTACCACTTTGGATGTGGTGATCAGT
GCAGTGCACATATTCTACACTGCCCCGGTGCCGTGGTACAAGTCGAAGAA
GCCGCCTCCGCCGCCAGCGGAGCACCCAAACGATGTGCCACTGACCACGC
CGCGACCAGTGCGAATCCTAAACACCGCCTTCTATCCGGCACTGGGTCTG
TACAAGCCCAGTGGCTCGCTGCTGGCCCAGCATTTCGAGAACATACGCAG
CTGTGGCATCGGTGTGCTCATCCTGAGCTTCTCCGGTGGCAAGCCCGCGG
AGGCGGCACTGCTGCATCAGATCTTGGAACTGGCACCGCAGCACAATCTT
ACCGTTACCTTTGGA

BO12912.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-PA 1452 CG14015-RA 1..697 17..713 3460 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-RA 2148 CG14015-RA 87..783 17..713 3470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5538757..5539110 370..17 1770 100 Minus
2L 23513712 2L 5538341..5538683 713..371 1700 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 19:44:45 has no hits.

BO12912.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:34 Download gff for BO12912.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-PA 1..697 17..714 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:11 Download gff for BO12912.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-PA 1..697 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:49:54 Download gff for BO12912.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 87..783 17..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:59 Download gff for BO12912.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 87..783 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:59 Download gff for BO12912.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5538757..5539110 17..370 100   Minus
2L 5538339..5538683 371..714 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:49:54 Download gff for BO12912.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5538339..5538683 371..714 99 <- Minus
arm_2L 5538757..5539110 17..370 100   Minus

BO12912.complete Sequence

1483 bp assembled on 2009-08-24

GenBank Submission: KX796742

> BO12912.complete
GAAGTTATCAGTCGACATGCTGCTAAAAAAGTATGTGAAAACGCGGCGTA
AGCTGAAGATTCTACTCCTGCTGGCCATCGTCGCCCTGCTGGTCATCACC
ATCATAGTGCTGGGCTCCAGCGGACGCAATGCGGCCATCGAACTGCTGCT
GGACGAGCGATTCATCGCACGCGCCTACAGGCCCGGGGATCAGCCCCAAG
TGGCGGAGAAGCCGCCGCCGGTGGCCGTCGCGCTGCTCCAGCCGCAGCGG
GAGAACGGAGTGATTGTGCCCGAGAAGTATGACGAGCAGAAGATCAAGGA
GCGCATCATTCAGAGCAAAATCGATCTGATGAAGCAGCAGCAGCAGCGGG
ACCACGAGGCGGAGCAGTCTTCGCGTACCACTTTGGATGTGGTGATCAGT
GCAGTGCACATATTCTACACTGCCCCGGTGCCGTGGTACAAGTCGAAGAA
GCCGCCTCCGCCGCCAGCGGAGCACCCAAACGATGTGCCACTGACCACGC
CGCGACCAGTGCGAATCCTAAACACCGCCTTCTATCCGGCACTGGGTCTG
TACAAGCCCAGTGGCTCGCTGCTGGCCCAGCATTTCGAGAACATACGCAG
CTGTGGCATCGGTGTGCTCATCCTGAGCTTCTCCGGTGGCAAGCCCGCGG
AGGCGGCACTGCTGCATCAGATCTTGGAACTGGCACCGCAGCACAATCTT
AGCGTTACCTTTGAGCTCAGTGTGGCCGGGAATCAGAGCGTGGAGTTTGT
GCGCCAGCAGCTGCAGGAGATTGCCACATACACCAGCCTAGCTGGATTCT
ACAAGGTGTGGAGTCAGTCGAGAGGTGTCTCCCTGCCGGTTCTCTACGTG
AGCAATGCCTACAAGTTGAGTGATAGTCTGGGAAGGCTGTTGTGTCGATC
GCCTTCGCTGGTGGAACCGGATGGTCTGCGGAGAATTCTGGATGCCTTAT
TCATTGGACACATAAGGCTCAAAAGCCATGCCGATGTCCTGCGGAGGTTG
TGCTTCGATGGCTTCTACAGCAAACTGCCCAGCAATGGAGCTGTCTTCGC
CAGCACTTGGAAGAACTGGTCGTATCTGAAGTCATTTGCGCTGTCCTACA
AGATGCTCTTTGTGCCCACGGTGGGTCCGGGATTCGCGGAGAGGAACAAG
TTTCCGCGACACGGAGACATCCAGCGGCATCGCAGCAATGGACGGTACTA
TGGCGTGGCCTGGCGGACAGCCATTCTCAACCACGTGGGCTTCATCAACA
TAGCCAGCTACAACAACTGGCCGGATGGCAGCCAGATCGAGGAGGTGATG
CCACGCGCCGGCTTCCTCGACTACAATCCGGGCTCGAGAACGAAATATCT
GGATCTCACGGCCCATTGGGTGGGCAACTTTCTGAAGACGCGACAGGAGG
CGGCGGCAGCAGCCTCGCCAGCATCGCCGCCCAACTGTTACGAGCTGCTC
AATGGAACCATATGCGCAAGCTTTCTAGACCAT

BO12912.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-RA 1452 CG14015-PA 1..1449 17..1465 7245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-RA 2148 CG14015-RA 87..1535 17..1465 7245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5538087..5538683 967..371 2985 100 Minus
2L 23513712 2L 5538757..5539110 370..17 1770 100 Minus
2L 23513712 2L 5537463..5537733 1465..1195 1355 100 Minus
2L 23513712 2L 5537801..5538031 1195..965 1155 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:32:48 has no hits.

BO12912.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:53 Download gff for BO12912.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 60..1508 17..1467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:42 Download gff for BO12912.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 87..1535 17..1467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:07 Download gff for BO12912.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 87..1535 17..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:07 Download gff for BO12912.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5537461..5537732 1196..1467 99 <- Minus
2L 5537801..5538029 967..1195 100 <- Minus
2L 5538088..5538683 371..966 100 <- Minus
2L 5538757..5539110 17..370 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:42 Download gff for BO12912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5537461..5537732 1196..1467 99 <- Minus
arm_2L 5537801..5538029 967..1195 100 <- Minus
arm_2L 5538088..5538683 371..966 100 <- Minus
arm_2L 5538757..5539110 17..370 100   Minus

BO12912.pep Sequence

Translation from 16 to 1483

> BO12912.pep
MLLKKYVKTRRKLKILLLLAIVALLVITIIVLGSSGRNAAIELLLDERFI
ARAYRPGDQPQVAEKPPPVAVALLQPQRENGVIVPEKYDEQKIKERIIQS
KIDLMKQQQQRDHEAEQSSRTTLDVVISAVHIFYTAPVPWYKSKKPPPPP
AEHPNDVPLTTPRPVRILNTAFYPALGLYKPSGSLLAQHFENIRSCGIGV
LILSFSGGKPAEAALLHQILELAPQHNLSVTFELSVAGNQSVEFVRQQLQ
EIATYTSLAGFYKVWSQSRGVSLPVLYVSNAYKLSDSLGRLLCRSPSLVE
PDGLRRILDALFIGHIRLKSHADVLRRLCFDGFYSKLPSNGAVFASTWKN
WSYLKSFALSYKMLFVPTVGPGFAERNKFPRHGDIQRHRSNGRYYGVAWR
TAILNHVGFINIASYNNWPDGSQIEEVMPRAGFLDYNPGSRTKYLDLTAH
WVGNFLKTRQEAAAAASPASPPNCYELLNGTICASFLDH

BO12912.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-PA 483 CG14015-PA 1..483 1..483 2510 100 Plus