Clone Sequence Records
BO12912.3prime Sequence
685 bp (681 high quality bases) assembled on 2006-05-08
> BO12912.3prime
ATGGTCTAGAAAGCTTGCGCATATGGTTCCATTGAGCAGCTCGTAACAGT
TGGGCGGCGATGCTGGCGAGGCTGCTGCCGCCGCCTCCTGTCGCGTCTTC
AGAAAGTTGCCCACCCAATGGGCCGTGAGATCCAGATATTTCGTTCTCGA
GCCCGGATTGTAGTCGAGGAAGCCGGCGCGTGGCATCACCTCCTCGATCT
GGCTGCCATCCGGCCAGTTGTTGTAGCTGGCTATGTTGATGAAGCCCACG
TGGTTGAGAATGGCTGTCCGCCAGGCCACGCCATAGTACCGTCCATTGCT
GCGATGCCGCTGGATGTCTCCGTGTCGCGGAAACTTGTTCCTCTCCGCGA
ATCCCGGACCCACCGTGGGCACAAAGAGCATCTTGTAGGACAGCGCAAAT
GACTTCAGATACGACCAGTTCTTCCAAGTGCTGGCGAAGACAGCTCCATT
GCTGGGCAGTTTGCTGTAGAAGCCATCGAAGCACAACCTCCGCAGGACAT
CGGCATGGCTTTTGAGCCTTATGTGTCCAATGAATAAGGCATCCAGAATT
CTCCGCAGACCATCCGGTTCCACCAGCGAAGGCGATCGACACAACAGCCT
TCCCAGACTATCACTCAACTTGTAGGCATTGCTCACGTAGAGAACCGGCA
GGGAGACACCTCTCGACTGACTCCACACCTTGTAG
BO12912.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-PA | 1452 | CG14015-RA | 783..1449 | 685..19 | 3335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-RA | 2148 | CG14015-RA | 869..1535 | 685..19 | 3335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5537463..5537733 | 19..289 | 1355 | 100 | Plus |
2L | 23513712 | 2L | 5537801..5538031 | 289..519 | 1155 | 100 | Plus |
2L | 23513712 | 2L | 5538087..5538255 | 517..685 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:38:11 has no hits.
BO12912.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:33 Download gff for
BO12912.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-PA | 783..1452 | 18..685 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:10 Download gff for
BO12912.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-PA | 783..1452 | 18..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:59 Download gff for
BO12912.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 869..1535 | 19..685 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:18 Download gff for
BO12912.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 869..1535 | 19..685 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:18 Download gff for
BO12912.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5537463..5537732 | 19..288 | 100 | <- | Plus |
2L | 5537801..5538029 | 289..517 | 100 | <- | Plus |
2L | 5538088..5538255 | 518..685 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:59 Download gff for
BO12912.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5537463..5537732 | 19..288 | 100 | <- | Plus |
arm_2L | 5537801..5538029 | 289..517 | 100 | <- | Plus |
arm_2L | 5538088..5538255 | 518..685 | 100 | | Plus |
BO12912.5prime Sequence
715 bp (696 high quality bases) assembled on 2006-05-08
> BO12912.5prime
GAAGTTATCAGTCGACATGCTGCTAAAAAAGTATGTGAAAACGCGGCGTA
AGCTGAAGATTCTACTCCTGCTGGCCATCGTCGCCCTGCTGGTCATCACC
ATCATAGTGCTGGGCTCCAGCGGACGCAATGCGGCCATCGAACTGCTGCT
GGACGAGCGATTCATCGCACGCGCCTACAGGCCCGGGGATCAGCCCCAAG
TGGCGGAGAAGCCGCCGCCGGTGGCCGTCGCGCTGCTCCAGCCGCAGCGG
GAGAACGGAGTGATTGTGCCCGAGAAGTATGACGAGCAGAAGATCAAGGA
GCGCATCATTCAGAGCAAAATCGATCTGATGAAGCAGCAGCAGCAGCGGG
ACCACGAGGCGGAGCAGTCTTCGCGTACCACTTTGGATGTGGTGATCAGT
GCAGTGCACATATTCTACACTGCCCCGGTGCCGTGGTACAAGTCGAAGAA
GCCGCCTCCGCCGCCAGCGGAGCACCCAAACGATGTGCCACTGACCACGC
CGCGACCAGTGCGAATCCTAAACACCGCCTTCTATCCGGCACTGGGTCTG
TACAAGCCCAGTGGCTCGCTGCTGGCCCAGCATTTCGAGAACATACGCAG
CTGTGGCATCGGTGTGCTCATCCTGAGCTTCTCCGGTGGCAAGCCCGCGG
AGGCGGCACTGCTGCATCAGATCTTGGAACTGGCACCGCAGCACAATCTT
ACCGTTACCTTTGGA
BO12912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-PA | 1452 | CG14015-RA | 1..697 | 17..713 | 3460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-RA | 2148 | CG14015-RA | 87..783 | 17..713 | 3470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5538757..5539110 | 370..17 | 1770 | 100 | Minus |
2L | 23513712 | 2L | 5538341..5538683 | 713..371 | 1700 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:44:45 has no hits.
BO12912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:34 Download gff for
BO12912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-PA | 1..697 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:11 Download gff for
BO12912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-PA | 1..697 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:49:54 Download gff for
BO12912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 87..783 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:59 Download gff for
BO12912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 87..783 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:59 Download gff for
BO12912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5538757..5539110 | 17..370 | 100 | | Minus |
2L | 5538339..5538683 | 371..714 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:49:54 Download gff for
BO12912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5538339..5538683 | 371..714 | 99 | <- | Minus |
arm_2L | 5538757..5539110 | 17..370 | 100 | | Minus |
BO12912.complete Sequence
1483 bp assembled on 2009-08-24
GenBank Submission: KX796742
> BO12912.complete
GAAGTTATCAGTCGACATGCTGCTAAAAAAGTATGTGAAAACGCGGCGTA
AGCTGAAGATTCTACTCCTGCTGGCCATCGTCGCCCTGCTGGTCATCACC
ATCATAGTGCTGGGCTCCAGCGGACGCAATGCGGCCATCGAACTGCTGCT
GGACGAGCGATTCATCGCACGCGCCTACAGGCCCGGGGATCAGCCCCAAG
TGGCGGAGAAGCCGCCGCCGGTGGCCGTCGCGCTGCTCCAGCCGCAGCGG
GAGAACGGAGTGATTGTGCCCGAGAAGTATGACGAGCAGAAGATCAAGGA
GCGCATCATTCAGAGCAAAATCGATCTGATGAAGCAGCAGCAGCAGCGGG
ACCACGAGGCGGAGCAGTCTTCGCGTACCACTTTGGATGTGGTGATCAGT
GCAGTGCACATATTCTACACTGCCCCGGTGCCGTGGTACAAGTCGAAGAA
GCCGCCTCCGCCGCCAGCGGAGCACCCAAACGATGTGCCACTGACCACGC
CGCGACCAGTGCGAATCCTAAACACCGCCTTCTATCCGGCACTGGGTCTG
TACAAGCCCAGTGGCTCGCTGCTGGCCCAGCATTTCGAGAACATACGCAG
CTGTGGCATCGGTGTGCTCATCCTGAGCTTCTCCGGTGGCAAGCCCGCGG
AGGCGGCACTGCTGCATCAGATCTTGGAACTGGCACCGCAGCACAATCTT
AGCGTTACCTTTGAGCTCAGTGTGGCCGGGAATCAGAGCGTGGAGTTTGT
GCGCCAGCAGCTGCAGGAGATTGCCACATACACCAGCCTAGCTGGATTCT
ACAAGGTGTGGAGTCAGTCGAGAGGTGTCTCCCTGCCGGTTCTCTACGTG
AGCAATGCCTACAAGTTGAGTGATAGTCTGGGAAGGCTGTTGTGTCGATC
GCCTTCGCTGGTGGAACCGGATGGTCTGCGGAGAATTCTGGATGCCTTAT
TCATTGGACACATAAGGCTCAAAAGCCATGCCGATGTCCTGCGGAGGTTG
TGCTTCGATGGCTTCTACAGCAAACTGCCCAGCAATGGAGCTGTCTTCGC
CAGCACTTGGAAGAACTGGTCGTATCTGAAGTCATTTGCGCTGTCCTACA
AGATGCTCTTTGTGCCCACGGTGGGTCCGGGATTCGCGGAGAGGAACAAG
TTTCCGCGACACGGAGACATCCAGCGGCATCGCAGCAATGGACGGTACTA
TGGCGTGGCCTGGCGGACAGCCATTCTCAACCACGTGGGCTTCATCAACA
TAGCCAGCTACAACAACTGGCCGGATGGCAGCCAGATCGAGGAGGTGATG
CCACGCGCCGGCTTCCTCGACTACAATCCGGGCTCGAGAACGAAATATCT
GGATCTCACGGCCCATTGGGTGGGCAACTTTCTGAAGACGCGACAGGAGG
CGGCGGCAGCAGCCTCGCCAGCATCGCCGCCCAACTGTTACGAGCTGCTC
AATGGAACCATATGCGCAAGCTTTCTAGACCAT
BO12912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-RA | 1452 | CG14015-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-RA | 2148 | CG14015-RA | 87..1535 | 17..1465 | 7245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5538087..5538683 | 967..371 | 2985 | 100 | Minus |
2L | 23513712 | 2L | 5538757..5539110 | 370..17 | 1770 | 100 | Minus |
2L | 23513712 | 2L | 5537463..5537733 | 1465..1195 | 1355 | 100 | Minus |
2L | 23513712 | 2L | 5537801..5538031 | 1195..965 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:32:48 has no hits.
BO12912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:53 Download gff for
BO12912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 60..1508 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:42 Download gff for
BO12912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 87..1535 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:07 Download gff for
BO12912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14015-RA | 87..1535 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:07 Download gff for
BO12912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5537461..5537732 | 1196..1467 | 99 | <- | Minus |
2L | 5537801..5538029 | 967..1195 | 100 | <- | Minus |
2L | 5538088..5538683 | 371..966 | 100 | <- | Minus |
2L | 5538757..5539110 | 17..370 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:42 Download gff for
BO12912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5537461..5537732 | 1196..1467 | 99 | <- | Minus |
arm_2L | 5537801..5538029 | 967..1195 | 100 | <- | Minus |
arm_2L | 5538088..5538683 | 371..966 | 100 | <- | Minus |
arm_2L | 5538757..5539110 | 17..370 | 100 | | Minus |
BO12912.pep Sequence
Translation from 16 to 1483
> BO12912.pep
MLLKKYVKTRRKLKILLLLAIVALLVITIIVLGSSGRNAAIELLLDERFI
ARAYRPGDQPQVAEKPPPVAVALLQPQRENGVIVPEKYDEQKIKERIIQS
KIDLMKQQQQRDHEAEQSSRTTLDVVISAVHIFYTAPVPWYKSKKPPPPP
AEHPNDVPLTTPRPVRILNTAFYPALGLYKPSGSLLAQHFENIRSCGIGV
LILSFSGGKPAEAALLHQILELAPQHNLSVTFELSVAGNQSVEFVRQQLQ
EIATYTSLAGFYKVWSQSRGVSLPVLYVSNAYKLSDSLGRLLCRSPSLVE
PDGLRRILDALFIGHIRLKSHADVLRRLCFDGFYSKLPSNGAVFASTWKN
WSYLKSFALSYKMLFVPTVGPGFAERNKFPRHGDIQRHRSNGRYYGVAWR
TAILNHVGFINIASYNNWPDGSQIEEVMPRAGFLDYNPGSRTKYLDLTAH
WVGNFLKTRQEAAAAASPASPPNCYELLNGTICASFLDH
BO12912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14015-PA | 483 | CG14015-PA | 1..483 | 1..483 | 2510 | 100 | Plus |